Wall clock time and date at job start Wed Apr 1 2020 04:16:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47234 * 2 1 4 4 H 1.09000 * 110.33077 * 52.75310 * 3 2 1 5 5 C 1.54485 * 110.37206 * 175.00229 * 3 2 1 6 6 C 1.54510 * 104.06166 * 142.81446 * 5 3 2 7 7 C 1.54479 * 104.06440 * 359.97438 * 6 5 3 8 8 H 1.09006 * 110.37146 * 94.96169 * 7 6 5 9 9 C 1.50695 * 110.37570 * 217.19149 * 7 6 5 10 10 O 1.20828 * 120.00101 * 114.99727 * 9 7 6 11 11 O 1.34225 * 119.99988 * 295.00710 * 9 7 6 12 12 C 1.45207 * 116.99987 * 179.97438 * 11 9 7 13 13 C 1.50704 * 109.46946 * 179.97438 * 12 11 9 14 14 O 1.21281 * 120.00024 * 0.02562 * 13 12 11 15 15 N 1.34778 * 119.99832 * 179.97438 * 13 12 11 16 16 C 1.37139 * 119.99907 * 355.95806 * 15 13 12 17 17 H 1.08000 * 119.99997 * 329.05507 * 16 15 13 18 18 C 1.38886 * 120.00026 * 149.33376 * 16 15 13 19 19 N 1.31421 * 120.00034 * 333.34530 * 18 16 15 20 20 Si 1.86799 * 120.00279 * 153.34505 * 18 16 15 21 21 H 1.48504 * 109.46953 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.47327 * 119.99930 * 20 18 16 23 23 H 1.48496 * 109.47584 * 240.00448 * 20 18 16 24 24 C 1.39787 * 119.99775 * 175.95102 * 15 13 12 25 25 C 1.38951 * 120.08154 * 301.02221 * 24 15 13 26 26 C 1.38092 * 119.92187 * 179.74512 * 25 24 15 27 27 C 1.38304 * 120.07481 * 0.55413 * 26 25 24 28 28 C 1.38302 * 120.15615 * 359.70229 * 27 26 25 29 29 C 1.38075 * 120.08238 * 0.02562 * 28 27 26 30 30 O 1.44422 * 104.80175 * 336.02549 * 7 6 5 31 31 H 1.09001 * 109.47077 * 59.99433 * 1 2 3 32 32 H 1.08997 * 109.46893 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.46945 * 299.99821 * 1 2 3 34 34 H 1.09003 * 109.47104 * 240.00672 * 2 1 3 35 35 H 1.08994 * 109.47432 * 120.00432 * 2 1 3 36 36 H 1.08993 * 110.51270 * 24.16678 * 5 3 2 37 37 H 1.09007 * 110.50928 * 261.45455 * 5 3 2 38 38 H 1.09003 * 110.50945 * 241.35303 * 6 5 3 39 39 H 1.09002 * 110.51199 * 118.64638 * 6 5 3 40 40 H 1.08997 * 109.47192 * 59.99789 * 12 11 9 41 41 H 1.09001 * 109.46828 * 299.99457 * 12 11 9 42 42 H 0.97004 * 120.00010 * 354.05181 * 19 18 16 43 43 H 1.08001 * 120.04266 * 0.02562 * 25 24 15 44 44 H 1.08000 * 119.95892 * 180.29539 * 26 25 24 45 45 H 1.08002 * 119.91951 * 179.71516 * 27 26 25 46 46 H 1.08006 * 119.96062 * 179.97438 * 28 27 26 47 47 H 1.08003 * 120.04225 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5830 2.0057 0.8136 5 6 3.5795 1.4686 0.1262 6 6 4.0107 2.6420 -0.7818 7 6 2.6809 3.1856 -1.3497 8 1 2.3228 4.0192 -0.7453 9 6 2.8594 3.6165 -2.7826 10 8 2.2733 3.0361 -3.6655 11 8 3.6697 4.6449 -3.0782 12 6 3.7942 5.0044 -4.4796 13 6 4.7374 6.1718 -4.6168 14 8 5.2542 6.6530 -3.6308 15 7 5.0074 6.6803 -5.8354 16 6 4.4900 6.0845 -6.9570 17 1 4.3155 5.0188 -6.9707 18 6 4.1958 6.8508 -8.0774 19 7 3.9028 8.1249 -7.9436 20 14 4.2167 6.0705 -9.7745 21 1 4.5731 4.6339 -9.6544 22 1 2.8729 6.1965 -10.3938 23 1 5.2201 6.7604 -10.6243 24 6 5.8147 7.8151 -5.9559 25 6 5.4457 9.0016 -5.3341 26 6 6.2484 10.1192 -5.4510 27 6 7.4125 10.0616 -6.1954 28 6 7.7802 8.8837 -6.8201 29 6 6.9853 7.7608 -6.7029 30 8 1.7634 2.0732 -1.2697 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.8933 -0.5137 -0.8901 35 1 1.8933 -0.5139 0.8899 36 1 4.0078 0.5321 -0.2307 37 1 3.8749 1.6560 1.1586 38 1 4.6523 2.2855 -1.5877 39 1 4.5194 3.4094 -0.1984 40 1 2.8156 5.2804 -4.8722 41 1 4.1838 4.1543 -5.0395 42 1 3.8071 8.5103 -7.0586 43 1 4.5344 9.0486 -4.7563 44 1 5.9645 11.0404 -4.9640 45 1 8.0361 10.9384 -6.2890 46 1 8.6898 8.8424 -7.4010 47 1 7.2733 6.8412 -7.1906 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000757120184.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:16:06 Heat of formation + Delta-G solvation = -134.596056 kcal Electronic energy + Delta-G solvation = -30439.407346 eV Core-core repulsion = 26166.598197 eV Total energy + Delta-G solvation = -4272.809149 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.70432 -39.78760 -39.16963 -37.51571 -36.04670 -35.03274 -33.92625 -32.41677 -31.71807 -30.23487 -30.03200 -29.16506 -27.35936 -24.79914 -24.65558 -22.30954 -21.98525 -21.67524 -21.29523 -20.66783 -19.68690 -18.25314 -17.68306 -16.95766 -16.67644 -16.27625 -16.19813 -15.65591 -15.50339 -15.13921 -14.70975 -14.37317 -14.05510 -13.90070 -13.88661 -13.70670 -13.55761 -13.35779 -13.08250 -12.73646 -12.48409 -12.44938 -12.06151 -11.98113 -11.89582 -11.71763 -11.67093 -11.23260 -11.07748 -11.05726 -10.95641 -10.90646 -10.58080 -10.35697 -10.34529 -10.32341 -10.11939 -9.96953 -9.37434 -8.88968 -8.54376 -8.20291 -7.66596 -6.77333 -4.27092 2.04646 2.14330 2.29490 2.39022 3.17696 3.25124 3.40927 3.52070 3.70061 4.02182 4.21130 4.28053 4.48728 4.51502 4.59020 4.75580 4.81622 4.90185 4.94162 5.00914 5.10283 5.23028 5.39287 5.51229 5.52357 5.53642 5.56015 5.61360 5.68158 5.70953 5.73590 5.75951 5.76368 5.85317 5.87798 6.07339 6.12706 6.26486 6.45614 6.50654 6.63304 6.71030 7.02845 7.16393 7.22791 7.40643 7.61490 7.85884 7.94940 8.22713 8.69196 9.15376 9.44669 10.41376 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.015014 B = 0.002568 C = 0.002295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1864.428377 B =10899.929724 C =12195.471196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.117 4.117 3 C 0.071 3.929 4 H 0.075 0.925 5 C -0.150 4.150 6 C -0.141 4.141 7 C 0.089 3.911 8 H 0.109 0.891 9 C 0.462 3.538 10 O -0.489 6.489 11 O -0.333 6.333 12 C 0.076 3.924 13 C 0.472 3.528 14 O -0.569 6.569 15 N -0.404 5.404 16 C -0.458 4.458 17 H 0.093 0.907 18 C 0.029 3.971 19 N -0.843 5.843 20 Si 1.072 2.928 21 H -0.280 1.280 22 H -0.282 1.282 23 H -0.278 1.278 24 C 0.187 3.813 25 C -0.115 4.115 26 C -0.111 4.111 27 C -0.146 4.146 28 C -0.114 4.114 29 C -0.117 4.117 30 O -0.341 6.341 31 H 0.063 0.937 32 H 0.054 0.946 33 H 0.053 0.947 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.095 0.905 40 H 0.100 0.900 41 H 0.093 0.907 42 H 0.284 0.716 43 H 0.112 0.888 44 H 0.114 0.886 45 H 0.112 0.888 46 H 0.115 0.885 47 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.141 -8.793 12.363 15.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.154 4.154 3 C 0.013 3.987 4 H 0.093 0.907 5 C -0.188 4.188 6 C -0.179 4.179 7 C 0.029 3.971 8 H 0.127 0.873 9 C 0.302 3.698 10 O -0.375 6.375 11 O -0.248 6.248 12 C 0.000 4.000 13 C 0.262 3.738 14 O -0.452 6.452 15 N -0.120 5.120 16 C -0.583 4.583 17 H 0.110 0.890 18 C -0.184 4.184 19 N -0.473 5.473 20 Si 0.897 3.103 21 H -0.206 1.206 22 H -0.208 1.208 23 H -0.204 1.204 24 C 0.095 3.905 25 C -0.135 4.135 26 C -0.130 4.130 27 C -0.164 4.164 28 C -0.133 4.133 29 C -0.137 4.137 30 O -0.260 6.260 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.092 0.908 35 H 0.095 0.905 36 H 0.099 0.901 37 H 0.101 0.899 38 H 0.101 0.899 39 H 0.114 0.886 40 H 0.118 0.882 41 H 0.111 0.889 42 H 0.097 0.903 43 H 0.130 0.870 44 H 0.132 0.868 45 H 0.130 0.870 46 H 0.133 0.867 47 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -0.410 -8.459 10.792 13.719 hybrid contribution 0.101 -0.286 1.351 1.384 sum -0.308 -8.746 12.143 14.968 Atomic orbital electron populations 1.21751 0.95127 1.01684 1.02444 1.21588 0.96919 0.94015 1.02895 1.23185 0.94372 0.94749 0.86375 0.90729 1.23035 0.95688 0.99373 1.00707 1.22874 0.96161 0.98627 1.00245 1.22292 0.91740 0.92354 0.90670 0.87350 1.23093 0.76870 0.78243 0.91547 1.90693 1.44582 1.53313 1.48951 1.86447 1.60726 1.47113 1.30531 1.22595 1.01714 0.98088 0.77605 1.19834 0.84300 0.86438 0.83264 1.90617 1.53993 1.63432 1.37145 1.41201 1.40777 1.24601 1.05418 1.20339 1.49916 0.94909 0.93174 0.88975 1.26391 0.92793 0.95212 1.04040 1.70617 1.34232 1.13686 1.28791 0.83472 0.77583 0.75383 0.73864 1.20569 1.20827 1.20409 1.17693 0.89879 0.87111 0.95799 1.21003 0.99671 0.91941 1.00881 1.20799 0.95089 0.97555 0.99536 1.20879 0.97766 0.97660 1.00109 1.20831 0.99400 0.93008 1.00025 1.21022 0.93419 0.98800 1.00479 1.89267 1.56488 1.42614 1.37675 0.91784 0.92672 0.92837 0.90817 0.90498 0.90091 0.89871 0.89931 0.88642 0.88205 0.88947 0.90350 0.86981 0.86776 0.86993 0.86728 0.86217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.85 37.16 0.37 -0.89 16 2 C -0.12 -0.95 5.56 -26.73 -0.15 -1.10 16 3 C 0.07 0.66 3.25 -25.95 -0.08 0.58 16 4 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 5 C -0.15 -1.23 6.63 -25.16 -0.17 -1.40 16 6 C -0.14 -1.50 6.62 -25.16 -0.17 -1.67 16 7 C 0.09 1.17 3.82 -27.11 -0.10 1.07 16 8 H 0.11 1.21 8.14 -51.93 -0.42 0.78 16 9 C 0.46 8.11 7.20 36.00 0.26 8.37 16 10 O -0.49 -9.98 16.30 -25.29 -0.41 -10.39 16 11 O -0.33 -6.47 9.75 -45.89 -0.45 -6.92 16 12 C 0.08 1.61 4.64 36.01 0.17 1.77 16 13 C 0.47 11.40 7.52 -10.98 -0.08 11.32 16 14 O -0.57 -14.81 15.93 -14.10 -0.22 -15.04 16 15 N -0.40 -10.00 2.54 -58.98 -0.15 -10.15 16 16 C -0.46 -11.42 8.42 -14.94 -0.13 -11.55 16 17 H 0.09 2.22 6.91 -52.49 -0.36 1.86 16 18 C 0.03 0.73 4.80 -17.49 -0.08 0.65 16 19 N -0.84 -22.61 12.94 55.49 0.72 -21.90 16 20 Si 1.07 22.30 29.99 -169.99 -5.10 17.20 16 21 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 22 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 23 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 24 C 0.19 4.49 3.10 -83.70 -0.26 4.23 16 25 C -0.11 -2.60 7.73 -39.37 -0.30 -2.91 16 26 C -0.11 -2.15 10.04 -39.61 -0.40 -2.54 16 27 C -0.15 -2.62 10.04 -39.53 -0.40 -3.02 16 28 C -0.11 -2.16 10.04 -39.62 -0.40 -2.55 16 29 C -0.12 -2.59 9.42 -39.37 -0.37 -2.96 16 30 O -0.34 -4.67 10.39 -54.50 -0.57 -5.24 16 31 H 0.06 0.65 8.01 -51.93 -0.42 0.24 16 32 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.08 0.63 7.87 -51.93 -0.41 0.22 16 37 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.08 0.97 7.86 -51.93 -0.41 0.56 16 39 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 40 H 0.10 2.10 8.13 -51.93 -0.42 1.68 16 41 H 0.09 1.87 7.51 -51.93 -0.39 1.48 16 42 H 0.28 7.76 6.16 -40.82 -0.25 7.51 16 43 H 0.11 2.57 8.06 -52.49 -0.42 2.15 16 44 H 0.11 1.85 8.06 -52.49 -0.42 1.43 16 45 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 46 H 0.11 1.79 8.06 -52.48 -0.42 1.36 16 47 H 0.12 2.57 8.06 -52.48 -0.42 2.15 16 LS Contribution 395.72 15.07 5.96 5.96 Total: -1.00 -31.94 395.72 -9.47 -41.41 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: -6.95 Total: 7.68 kcal Atomic # 6 Polarization: -0.31 SS G_CDS: -2.30 Total: -2.61 kcal Atomic # 7 Polarization: -32.62 SS G_CDS: 0.57 Total: -32.05 kcal Atomic # 8 Polarization: -35.93 SS G_CDS: -1.65 Total: -37.58 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.10 Total: 17.20 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -31.94 -9.47 -41.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000757120184.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.191 kcal (2) G-P(sol) polarization free energy of solvation -31.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds