Wall clock time and date at job start Wed Apr 1 2020 04:16:05
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.52999 * 109.47234 * 2 1
4 4 H 1.09000 * 110.33077 * 52.75310 * 3 2 1
5 5 C 1.54485 * 110.37206 * 175.00229 * 3 2 1
6 6 C 1.54510 * 104.06166 * 142.81446 * 5 3 2
7 7 C 1.54479 * 104.06440 * 359.97438 * 6 5 3
8 8 H 1.09006 * 110.37146 * 94.96169 * 7 6 5
9 9 C 1.50695 * 110.37570 * 217.19149 * 7 6 5
10 10 O 1.20828 * 120.00101 * 114.99727 * 9 7 6
11 11 O 1.34225 * 119.99988 * 295.00710 * 9 7 6
12 12 C 1.45207 * 116.99987 * 179.97438 * 11 9 7
13 13 C 1.50704 * 109.46946 * 179.97438 * 12 11 9
14 14 O 1.21281 * 120.00024 * 0.02562 * 13 12 11
15 15 N 1.34778 * 119.99832 * 179.97438 * 13 12 11
16 16 C 1.37139 * 119.99907 * 355.95806 * 15 13 12
17 17 H 1.08000 * 119.99997 * 329.05507 * 16 15 13
18 18 C 1.38886 * 120.00026 * 149.33376 * 16 15 13
19 19 N 1.31421 * 120.00034 * 333.34530 * 18 16 15
20 20 Si 1.86799 * 120.00279 * 153.34505 * 18 16 15
21 21 H 1.48504 * 109.46953 * 0.02562 * 20 18 16
22 22 H 1.48499 * 109.47327 * 119.99930 * 20 18 16
23 23 H 1.48496 * 109.47584 * 240.00448 * 20 18 16
24 24 C 1.39787 * 119.99775 * 175.95102 * 15 13 12
25 25 C 1.38951 * 120.08154 * 301.02221 * 24 15 13
26 26 C 1.38092 * 119.92187 * 179.74512 * 25 24 15
27 27 C 1.38304 * 120.07481 * 0.55413 * 26 25 24
28 28 C 1.38302 * 120.15615 * 359.70229 * 27 26 25
29 29 C 1.38075 * 120.08238 * 0.02562 * 28 27 26
30 30 O 1.44422 * 104.80175 * 336.02549 * 7 6 5
31 31 H 1.09001 * 109.47077 * 59.99433 * 1 2 3
32 32 H 1.08997 * 109.46893 * 179.97438 * 1 2 3
33 33 H 1.09000 * 109.46945 * 299.99821 * 1 2 3
34 34 H 1.09003 * 109.47104 * 240.00672 * 2 1 3
35 35 H 1.08994 * 109.47432 * 120.00432 * 2 1 3
36 36 H 1.08993 * 110.51270 * 24.16678 * 5 3 2
37 37 H 1.09007 * 110.50928 * 261.45455 * 5 3 2
38 38 H 1.09003 * 110.50945 * 241.35303 * 6 5 3
39 39 H 1.09002 * 110.51199 * 118.64638 * 6 5 3
40 40 H 1.08997 * 109.47192 * 59.99789 * 12 11 9
41 41 H 1.09001 * 109.46828 * 299.99457 * 12 11 9
42 42 H 0.97004 * 120.00010 * 354.05181 * 19 18 16
43 43 H 1.08001 * 120.04266 * 0.02562 * 25 24 15
44 44 H 1.08000 * 119.95892 * 180.29539 * 26 25 24
45 45 H 1.08002 * 119.91951 * 179.71516 * 27 26 25
46 46 H 1.08006 * 119.96062 * 179.97438 * 28 27 26
47 47 H 1.08003 * 120.04225 * 180.02562 * 29 28 27
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 1.5830 2.0057 0.8136
5 6 3.5795 1.4686 0.1262
6 6 4.0107 2.6420 -0.7818
7 6 2.6809 3.1856 -1.3497
8 1 2.3228 4.0192 -0.7453
9 6 2.8594 3.6165 -2.7826
10 8 2.2733 3.0361 -3.6655
11 8 3.6697 4.6449 -3.0782
12 6 3.7942 5.0044 -4.4796
13 6 4.7374 6.1718 -4.6168
14 8 5.2542 6.6530 -3.6308
15 7 5.0074 6.6803 -5.8354
16 6 4.4900 6.0845 -6.9570
17 1 4.3155 5.0188 -6.9707
18 6 4.1958 6.8508 -8.0774
19 7 3.9028 8.1249 -7.9436
20 14 4.2167 6.0705 -9.7745
21 1 4.5731 4.6339 -9.6544
22 1 2.8729 6.1965 -10.3938
23 1 5.2201 6.7604 -10.6243
24 6 5.8147 7.8151 -5.9559
25 6 5.4457 9.0016 -5.3341
26 6 6.2484 10.1192 -5.4510
27 6 7.4125 10.0616 -6.1954
28 6 7.7802 8.8837 -6.8201
29 6 6.9853 7.7608 -6.7029
30 8 1.7634 2.0732 -1.2697
31 1 -0.3633 0.5139 -0.8899
32 1 -0.3633 -1.0277 -0.0005
33 1 -0.3633 0.5138 0.8900
34 1 1.8933 -0.5137 -0.8901
35 1 1.8933 -0.5139 0.8899
36 1 4.0078 0.5321 -0.2307
37 1 3.8749 1.6560 1.1586
38 1 4.6523 2.2855 -1.5877
39 1 4.5194 3.4094 -0.1984
40 1 2.8156 5.2804 -4.8722
41 1 4.1838 4.1543 -5.0395
42 1 3.8071 8.5103 -7.0586
43 1 4.5344 9.0486 -4.7563
44 1 5.9645 11.0404 -4.9640
45 1 8.0361 10.9384 -6.2890
46 1 8.6898 8.8424 -7.4010
47 1 7.2733 6.8412 -7.1906
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000757120184.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:16:05
Heat of formation + Delta-G solvation = -150.379814 kcal
Electronic energy + Delta-G solvation = -30440.091781 eV
Core-core repulsion = 26166.598197 eV
Total energy + Delta-G solvation = -4273.493584 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 347.161 amu
Computer time = 0.91 seconds
Orbital eigenvalues (eV)
-42.09134 -41.42703 -40.34368 -39.18812 -37.61774 -36.89053 -34.67496 -33.63489
-33.29418 -31.82455 -31.61000 -30.29493 -28.85376 -26.64509 -25.68798 -23.73274
-23.30987 -22.94579 -22.10152 -21.93418 -21.55121 -19.99068 -19.08172 -18.27980
-18.03257 -17.83896 -17.41610 -17.27090 -16.82068 -16.78231 -16.28804 -15.74515
-15.51146 -15.26846 -15.03269 -14.85029 -14.62070 -14.58661 -14.31311 -14.20731
-14.05524 -13.98342 -13.69193 -13.37175 -13.02132 -12.80195 -12.79685 -12.51718
-12.43594 -12.18912 -12.02528 -12.01577 -11.95080 -11.88509 -11.79594 -11.62351
-11.48662 -11.21463 -10.93361 -10.77067 -10.38555 -9.80928 -9.45776 -8.70659
-6.25643 0.43452 0.53715 0.88515 0.99618 1.41426 1.55258 1.74936
1.79519 2.29012 2.57174 2.83085 2.89684 3.09940 3.32753 3.44578
3.75521 3.76945 3.82809 3.96064 3.97896 4.03898 4.09849 4.12907
4.14149 4.26925 4.27692 4.33738 4.50395 4.58584 4.69566 4.71468
4.81069 4.84845 4.90106 4.93312 5.06695 5.10229 5.11441 5.13862
5.19066 5.37480 5.41412 5.52805 5.60314 5.70327 5.71446 5.81545
6.09152 6.31505 6.45975 6.77919 7.25309 7.55467 8.41245
Molecular weight = 347.16amu
Principal moments of inertia in cm(-1)
A = 0.015014 B = 0.002568 C = 0.002295
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1864.428377 B =10899.929724 C =12195.471196
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.153 4.153
2 C -0.116 4.116
3 C 0.062 3.938
4 H 0.094 0.906
5 C -0.140 4.140
6 C -0.141 4.141
7 C 0.091 3.909
8 H 0.133 0.867
9 C 0.459 3.541
10 O -0.524 6.524
11 O -0.338 6.338
12 C 0.087 3.913
13 C 0.461 3.539
14 O -0.596 6.596
15 N -0.410 5.410
16 C -0.466 4.466
17 H 0.094 0.906
18 C -0.004 4.004
19 N -0.866 5.866
20 Si 1.117 2.883
21 H -0.264 1.264
22 H -0.279 1.279
23 H -0.273 1.273
24 C 0.151 3.849
25 C -0.141 4.141
26 C -0.112 4.112
27 C -0.135 4.135
28 C -0.109 4.109
29 C -0.141 4.141
30 O -0.372 6.372
31 H 0.035 0.965
32 H 0.065 0.935
33 H 0.065 0.935
34 H 0.058 0.942
35 H 0.106 0.894
36 H 0.084 0.916
37 H 0.114 0.886
38 H 0.065 0.935
39 H 0.112 0.888
40 H 0.094 0.906
41 H 0.097 0.903
42 H 0.271 0.729
43 H 0.091 0.909
44 H 0.146 0.854
45 H 0.159 0.841
46 H 0.154 0.846
47 H 0.115 0.885
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.311 -8.721 13.207 15.880
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.210 4.210
2 C -0.153 4.153
3 C 0.005 3.995
4 H 0.112 0.888
5 C -0.178 4.178
6 C -0.179 4.179
7 C 0.032 3.968
8 H 0.151 0.849
9 C 0.302 3.698
10 O -0.412 6.412
11 O -0.254 6.254
12 C 0.010 3.990
13 C 0.252 3.748
14 O -0.481 6.481
15 N -0.126 5.126
16 C -0.591 4.591
17 H 0.112 0.888
18 C -0.212 4.212
19 N -0.497 5.497
20 Si 0.936 3.064
21 H -0.188 1.188
22 H -0.205 1.205
23 H -0.198 1.198
24 C 0.060 3.940
25 C -0.161 4.161
26 C -0.130 4.130
27 C -0.153 4.153
28 C -0.128 4.128
29 C -0.161 4.161
30 O -0.292 6.292
31 H 0.055 0.945
32 H 0.084 0.916
33 H 0.084 0.916
34 H 0.076 0.924
35 H 0.125 0.875
36 H 0.103 0.897
37 H 0.133 0.867
38 H 0.084 0.916
39 H 0.131 0.869
40 H 0.112 0.888
41 H 0.115 0.885
42 H 0.082 0.918
43 H 0.109 0.891
44 H 0.164 0.836
45 H 0.177 0.823
46 H 0.171 0.829
47 H 0.133 0.867
Dipole moment (debyes) X Y Z Total
from point charges 1.049 -8.392 11.654 14.399
hybrid contribution -0.336 -0.267 1.156 1.233
sum 0.713 -8.659 12.810 15.478
Atomic orbital electron populations
1.21749 0.95426 1.02158 1.01663 1.21642 0.96673 0.93442 1.03558
1.23527 0.95496 0.95318 0.85110 0.88784 1.23048 0.94576 0.98329
1.01821 1.22937 0.94512 1.00094 1.00325 1.22523 0.93543 0.93397
0.87359 0.84946 1.24169 0.75353 0.76883 0.93362 1.90665 1.45856
1.54220 1.50438 1.86471 1.61514 1.48131 1.29261 1.22317 1.00524
0.97169 0.78991 1.20277 0.84488 0.87026 0.83021 1.90565 1.55227
1.64524 1.37783 1.41371 1.40936 1.24911 1.05407 1.20557 1.50052
0.95083 0.93420 0.88840 1.27670 0.91598 0.94964 1.07014 1.70706
1.36411 1.14685 1.27903 0.82917 0.77763 0.75572 0.70122 1.18827
1.20487 1.19796 1.18041 0.91064 0.87190 0.97669 1.21061 1.00061
0.93171 1.01771 1.21234 0.94992 0.97499 0.99275 1.21425 0.97158
0.98815 0.97865 1.21319 0.99897 0.92093 0.99461 1.21209 0.93762
1.00141 1.00950 1.89256 1.56836 1.42979 1.40169 0.94536 0.91629
0.91587 0.92353 0.87531 0.89740 0.86745 0.91629 0.86950 0.88842
0.88524 0.91787 0.89066 0.83631 0.82305 0.82872 0.86707
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.36 9.85 71.98 0.71 -1.65 16
2 C -0.12 -1.70 5.56 30.59 0.17 -1.53 16
3 C 0.06 1.05 3.25 31.10 0.10 1.15 16
4 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16
5 C -0.14 -1.95 6.63 31.61 0.21 -1.74 16
6 C -0.14 -2.84 6.62 31.61 0.21 -2.63 16
7 C 0.09 2.37 3.82 30.35 0.12 2.49 16
8 H 0.13 2.81 8.14 -2.38 -0.02 2.79 16
9 C 0.46 16.71 7.20 71.23 0.51 17.22 16
10 O -0.52 -22.35 16.30 28.21 0.46 -21.89 16
11 O -0.34 -13.72 9.75 -45.01 -0.44 -14.16 16
12 C 0.09 3.85 4.64 71.24 0.33 4.18 16
13 C 0.46 23.43 7.52 87.66 0.66 24.09 16
14 O -0.60 -32.43 15.93 15.76 0.25 -32.18 16
15 N -0.41 -21.22 2.54 -458.90 -1.17 -22.39 16
16 C -0.47 -23.99 8.42 84.02 0.71 -23.28 16
17 H 0.09 4.66 6.91 -2.91 -0.02 4.64 16
18 C 0.00 -0.21 4.80 84.91 0.41 0.20 16
19 N -0.87 -47.49 12.94 21.65 0.28 -47.21 16
20 Si 1.12 44.89 29.99 68.60 2.06 46.95 16
21 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16
22 H -0.28 -11.02 7.11 99.48 0.71 -10.32 16
23 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16
24 C 0.15 7.48 3.10 38.22 0.12 7.60 16
25 C -0.14 -6.54 7.73 22.41 0.17 -6.37 16
26 C -0.11 -4.16 10.04 22.25 0.22 -3.93 16
27 C -0.13 -4.41 10.04 22.30 0.22 -4.18 16
28 C -0.11 -3.88 10.04 22.25 0.22 -3.65 16
29 C -0.14 -6.23 9.42 22.41 0.21 -6.01 16
30 O -0.37 -10.14 10.39 -130.56 -1.36 -11.50 16
31 H 0.04 0.75 8.01 -2.39 -0.02 0.73 16
32 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16
33 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16
34 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16
35 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16
36 H 0.08 1.13 7.87 -2.39 -0.02 1.12 16
37 H 0.11 0.92 8.14 -2.38 -0.02 0.90 16
38 H 0.06 1.54 7.86 -2.39 -0.02 1.52 16
39 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16
40 H 0.09 4.21 8.13 -2.39 -0.02 4.19 16
41 H 0.10 4.14 7.51 -2.39 -0.02 4.12 16
42 H 0.27 15.40 6.16 -92.71 -0.57 14.83 16
43 H 0.09 4.47 8.06 -2.91 -0.02 4.44 16
44 H 0.15 4.37 8.06 -2.91 -0.02 4.35 16
45 H 0.16 3.73 8.06 -2.91 -0.02 3.71 16
46 H 0.15 4.16 8.06 -2.91 -0.02 4.14 16
47 H 0.11 5.01 8.06 -2.91 -0.02 4.99 16
Total: -1.00 -73.24 395.72 6.56 -66.68
By element:
Atomic # 1 Polarization: 32.58 SS G_CDS: 1.16 Total: 33.75 kcal
Atomic # 6 Polarization: -3.36 SS G_CDS: 5.31 Total: 1.95 kcal
Atomic # 7 Polarization: -68.71 SS G_CDS: -0.89 Total: -69.59 kcal
Atomic # 8 Polarization: -78.65 SS G_CDS: -1.08 Total: -79.73 kcal
Atomic # 14 Polarization: 44.89 SS G_CDS: 2.06 Total: 46.95 kcal
Total: -73.24 6.56 -66.68 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000757120184.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -83.696 kcal
(2) G-P(sol) polarization free energy of solvation -73.240 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.936 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.556 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.684 kcal
(6) G-S(sol) free energy of system = (1) + (5) -150.380 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.91 seconds