Wall clock time and date at job start Wed Apr 1 2020 04:16:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47234 * 2 1 4 4 H 1.09000 * 110.33077 * 52.75310 * 3 2 1 5 5 C 1.54485 * 110.37206 * 175.00229 * 3 2 1 6 6 C 1.54510 * 104.06166 * 142.81446 * 5 3 2 7 7 C 1.54479 * 104.06440 * 359.97438 * 6 5 3 8 8 H 1.09006 * 110.37146 * 94.96169 * 7 6 5 9 9 C 1.50695 * 110.37570 * 217.19149 * 7 6 5 10 10 O 1.20828 * 120.00101 * 114.99727 * 9 7 6 11 11 O 1.34225 * 119.99988 * 295.00710 * 9 7 6 12 12 C 1.45207 * 116.99987 * 179.97438 * 11 9 7 13 13 C 1.50704 * 109.46946 * 179.97438 * 12 11 9 14 14 O 1.21281 * 120.00024 * 0.02562 * 13 12 11 15 15 N 1.34778 * 119.99832 * 179.97438 * 13 12 11 16 16 C 1.37139 * 119.99907 * 355.95806 * 15 13 12 17 17 H 1.08000 * 119.99997 * 329.05507 * 16 15 13 18 18 C 1.38886 * 120.00026 * 149.33376 * 16 15 13 19 19 N 1.31421 * 120.00034 * 333.34530 * 18 16 15 20 20 Si 1.86799 * 120.00279 * 153.34505 * 18 16 15 21 21 H 1.48504 * 109.46953 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.47327 * 119.99930 * 20 18 16 23 23 H 1.48496 * 109.47584 * 240.00448 * 20 18 16 24 24 C 1.39787 * 119.99775 * 175.95102 * 15 13 12 25 25 C 1.38951 * 120.08154 * 301.02221 * 24 15 13 26 26 C 1.38092 * 119.92187 * 179.74512 * 25 24 15 27 27 C 1.38304 * 120.07481 * 0.55413 * 26 25 24 28 28 C 1.38302 * 120.15615 * 359.70229 * 27 26 25 29 29 C 1.38075 * 120.08238 * 0.02562 * 28 27 26 30 30 O 1.44422 * 104.80175 * 336.02549 * 7 6 5 31 31 H 1.09001 * 109.47077 * 59.99433 * 1 2 3 32 32 H 1.08997 * 109.46893 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.46945 * 299.99821 * 1 2 3 34 34 H 1.09003 * 109.47104 * 240.00672 * 2 1 3 35 35 H 1.08994 * 109.47432 * 120.00432 * 2 1 3 36 36 H 1.08993 * 110.51270 * 24.16678 * 5 3 2 37 37 H 1.09007 * 110.50928 * 261.45455 * 5 3 2 38 38 H 1.09003 * 110.50945 * 241.35303 * 6 5 3 39 39 H 1.09002 * 110.51199 * 118.64638 * 6 5 3 40 40 H 1.08997 * 109.47192 * 59.99789 * 12 11 9 41 41 H 1.09001 * 109.46828 * 299.99457 * 12 11 9 42 42 H 0.97004 * 120.00010 * 354.05181 * 19 18 16 43 43 H 1.08001 * 120.04266 * 0.02562 * 25 24 15 44 44 H 1.08000 * 119.95892 * 180.29539 * 26 25 24 45 45 H 1.08002 * 119.91951 * 179.71516 * 27 26 25 46 46 H 1.08006 * 119.96062 * 179.97438 * 28 27 26 47 47 H 1.08003 * 120.04225 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5830 2.0057 0.8136 5 6 3.5795 1.4686 0.1262 6 6 4.0107 2.6420 -0.7818 7 6 2.6809 3.1856 -1.3497 8 1 2.3228 4.0192 -0.7453 9 6 2.8594 3.6165 -2.7826 10 8 2.2733 3.0361 -3.6655 11 8 3.6697 4.6449 -3.0782 12 6 3.7942 5.0044 -4.4796 13 6 4.7374 6.1718 -4.6168 14 8 5.2542 6.6530 -3.6308 15 7 5.0074 6.6803 -5.8354 16 6 4.4900 6.0845 -6.9570 17 1 4.3155 5.0188 -6.9707 18 6 4.1958 6.8508 -8.0774 19 7 3.9028 8.1249 -7.9436 20 14 4.2167 6.0705 -9.7745 21 1 4.5731 4.6339 -9.6544 22 1 2.8729 6.1965 -10.3938 23 1 5.2201 6.7604 -10.6243 24 6 5.8147 7.8151 -5.9559 25 6 5.4457 9.0016 -5.3341 26 6 6.2484 10.1192 -5.4510 27 6 7.4125 10.0616 -6.1954 28 6 7.7802 8.8837 -6.8201 29 6 6.9853 7.7608 -6.7029 30 8 1.7634 2.0732 -1.2697 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.8933 -0.5137 -0.8901 35 1 1.8933 -0.5139 0.8899 36 1 4.0078 0.5321 -0.2307 37 1 3.8749 1.6560 1.1586 38 1 4.6523 2.2855 -1.5877 39 1 4.5194 3.4094 -0.1984 40 1 2.8156 5.2804 -4.8722 41 1 4.1838 4.1543 -5.0395 42 1 3.8071 8.5103 -7.0586 43 1 4.5344 9.0486 -4.7563 44 1 5.9645 11.0404 -4.9640 45 1 8.0361 10.9384 -6.2890 46 1 8.6898 8.8424 -7.4010 47 1 7.2733 6.8412 -7.1906 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000757120184.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:16:05 Heat of formation + Delta-G solvation = -150.379814 kcal Electronic energy + Delta-G solvation = -30440.091781 eV Core-core repulsion = 26166.598197 eV Total energy + Delta-G solvation = -4273.493584 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.09134 -41.42703 -40.34368 -39.18812 -37.61774 -36.89053 -34.67496 -33.63489 -33.29418 -31.82455 -31.61000 -30.29493 -28.85376 -26.64509 -25.68798 -23.73274 -23.30987 -22.94579 -22.10152 -21.93418 -21.55121 -19.99068 -19.08172 -18.27980 -18.03257 -17.83896 -17.41610 -17.27090 -16.82068 -16.78231 -16.28804 -15.74515 -15.51146 -15.26846 -15.03269 -14.85029 -14.62070 -14.58661 -14.31311 -14.20731 -14.05524 -13.98342 -13.69193 -13.37175 -13.02132 -12.80195 -12.79685 -12.51718 -12.43594 -12.18912 -12.02528 -12.01577 -11.95080 -11.88509 -11.79594 -11.62351 -11.48662 -11.21463 -10.93361 -10.77067 -10.38555 -9.80928 -9.45776 -8.70659 -6.25643 0.43452 0.53715 0.88515 0.99618 1.41426 1.55258 1.74936 1.79519 2.29012 2.57174 2.83085 2.89684 3.09940 3.32753 3.44578 3.75521 3.76945 3.82809 3.96064 3.97896 4.03898 4.09849 4.12907 4.14149 4.26925 4.27692 4.33738 4.50395 4.58584 4.69566 4.71468 4.81069 4.84845 4.90106 4.93312 5.06695 5.10229 5.11441 5.13862 5.19066 5.37480 5.41412 5.52805 5.60314 5.70327 5.71446 5.81545 6.09152 6.31505 6.45975 6.77919 7.25309 7.55467 8.41245 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.015014 B = 0.002568 C = 0.002295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1864.428377 B =10899.929724 C =12195.471196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.116 4.116 3 C 0.062 3.938 4 H 0.094 0.906 5 C -0.140 4.140 6 C -0.141 4.141 7 C 0.091 3.909 8 H 0.133 0.867 9 C 0.459 3.541 10 O -0.524 6.524 11 O -0.338 6.338 12 C 0.087 3.913 13 C 0.461 3.539 14 O -0.596 6.596 15 N -0.410 5.410 16 C -0.466 4.466 17 H 0.094 0.906 18 C -0.004 4.004 19 N -0.866 5.866 20 Si 1.117 2.883 21 H -0.264 1.264 22 H -0.279 1.279 23 H -0.273 1.273 24 C 0.151 3.849 25 C -0.141 4.141 26 C -0.112 4.112 27 C -0.135 4.135 28 C -0.109 4.109 29 C -0.141 4.141 30 O -0.372 6.372 31 H 0.035 0.965 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.058 0.942 35 H 0.106 0.894 36 H 0.084 0.916 37 H 0.114 0.886 38 H 0.065 0.935 39 H 0.112 0.888 40 H 0.094 0.906 41 H 0.097 0.903 42 H 0.271 0.729 43 H 0.091 0.909 44 H 0.146 0.854 45 H 0.159 0.841 46 H 0.154 0.846 47 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.311 -8.721 13.207 15.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.153 4.153 3 C 0.005 3.995 4 H 0.112 0.888 5 C -0.178 4.178 6 C -0.179 4.179 7 C 0.032 3.968 8 H 0.151 0.849 9 C 0.302 3.698 10 O -0.412 6.412 11 O -0.254 6.254 12 C 0.010 3.990 13 C 0.252 3.748 14 O -0.481 6.481 15 N -0.126 5.126 16 C -0.591 4.591 17 H 0.112 0.888 18 C -0.212 4.212 19 N -0.497 5.497 20 Si 0.936 3.064 21 H -0.188 1.188 22 H -0.205 1.205 23 H -0.198 1.198 24 C 0.060 3.940 25 C -0.161 4.161 26 C -0.130 4.130 27 C -0.153 4.153 28 C -0.128 4.128 29 C -0.161 4.161 30 O -0.292 6.292 31 H 0.055 0.945 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.076 0.924 35 H 0.125 0.875 36 H 0.103 0.897 37 H 0.133 0.867 38 H 0.084 0.916 39 H 0.131 0.869 40 H 0.112 0.888 41 H 0.115 0.885 42 H 0.082 0.918 43 H 0.109 0.891 44 H 0.164 0.836 45 H 0.177 0.823 46 H 0.171 0.829 47 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 1.049 -8.392 11.654 14.399 hybrid contribution -0.336 -0.267 1.156 1.233 sum 0.713 -8.659 12.810 15.478 Atomic orbital electron populations 1.21749 0.95426 1.02158 1.01663 1.21642 0.96673 0.93442 1.03558 1.23527 0.95496 0.95318 0.85110 0.88784 1.23048 0.94576 0.98329 1.01821 1.22937 0.94512 1.00094 1.00325 1.22523 0.93543 0.93397 0.87359 0.84946 1.24169 0.75353 0.76883 0.93362 1.90665 1.45856 1.54220 1.50438 1.86471 1.61514 1.48131 1.29261 1.22317 1.00524 0.97169 0.78991 1.20277 0.84488 0.87026 0.83021 1.90565 1.55227 1.64524 1.37783 1.41371 1.40936 1.24911 1.05407 1.20557 1.50052 0.95083 0.93420 0.88840 1.27670 0.91598 0.94964 1.07014 1.70706 1.36411 1.14685 1.27903 0.82917 0.77763 0.75572 0.70122 1.18827 1.20487 1.19796 1.18041 0.91064 0.87190 0.97669 1.21061 1.00061 0.93171 1.01771 1.21234 0.94992 0.97499 0.99275 1.21425 0.97158 0.98815 0.97865 1.21319 0.99897 0.92093 0.99461 1.21209 0.93762 1.00141 1.00950 1.89256 1.56836 1.42979 1.40169 0.94536 0.91629 0.91587 0.92353 0.87531 0.89740 0.86745 0.91629 0.86950 0.88842 0.88524 0.91787 0.89066 0.83631 0.82305 0.82872 0.86707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.36 9.85 71.98 0.71 -1.65 16 2 C -0.12 -1.70 5.56 30.59 0.17 -1.53 16 3 C 0.06 1.05 3.25 31.10 0.10 1.15 16 4 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 5 C -0.14 -1.95 6.63 31.61 0.21 -1.74 16 6 C -0.14 -2.84 6.62 31.61 0.21 -2.63 16 7 C 0.09 2.37 3.82 30.35 0.12 2.49 16 8 H 0.13 2.81 8.14 -2.38 -0.02 2.79 16 9 C 0.46 16.71 7.20 71.23 0.51 17.22 16 10 O -0.52 -22.35 16.30 28.21 0.46 -21.89 16 11 O -0.34 -13.72 9.75 -45.01 -0.44 -14.16 16 12 C 0.09 3.85 4.64 71.24 0.33 4.18 16 13 C 0.46 23.43 7.52 87.66 0.66 24.09 16 14 O -0.60 -32.43 15.93 15.76 0.25 -32.18 16 15 N -0.41 -21.22 2.54 -458.90 -1.17 -22.39 16 16 C -0.47 -23.99 8.42 84.02 0.71 -23.28 16 17 H 0.09 4.66 6.91 -2.91 -0.02 4.64 16 18 C 0.00 -0.21 4.80 84.91 0.41 0.20 16 19 N -0.87 -47.49 12.94 21.65 0.28 -47.21 16 20 Si 1.12 44.89 29.99 68.60 2.06 46.95 16 21 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 22 H -0.28 -11.02 7.11 99.48 0.71 -10.32 16 23 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16 24 C 0.15 7.48 3.10 38.22 0.12 7.60 16 25 C -0.14 -6.54 7.73 22.41 0.17 -6.37 16 26 C -0.11 -4.16 10.04 22.25 0.22 -3.93 16 27 C -0.13 -4.41 10.04 22.30 0.22 -4.18 16 28 C -0.11 -3.88 10.04 22.25 0.22 -3.65 16 29 C -0.14 -6.23 9.42 22.41 0.21 -6.01 16 30 O -0.37 -10.14 10.39 -130.56 -1.36 -11.50 16 31 H 0.04 0.75 8.01 -2.39 -0.02 0.73 16 32 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.08 1.13 7.87 -2.39 -0.02 1.12 16 37 H 0.11 0.92 8.14 -2.38 -0.02 0.90 16 38 H 0.06 1.54 7.86 -2.39 -0.02 1.52 16 39 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 40 H 0.09 4.21 8.13 -2.39 -0.02 4.19 16 41 H 0.10 4.14 7.51 -2.39 -0.02 4.12 16 42 H 0.27 15.40 6.16 -92.71 -0.57 14.83 16 43 H 0.09 4.47 8.06 -2.91 -0.02 4.44 16 44 H 0.15 4.37 8.06 -2.91 -0.02 4.35 16 45 H 0.16 3.73 8.06 -2.91 -0.02 3.71 16 46 H 0.15 4.16 8.06 -2.91 -0.02 4.14 16 47 H 0.11 5.01 8.06 -2.91 -0.02 4.99 16 Total: -1.00 -73.24 395.72 6.56 -66.68 By element: Atomic # 1 Polarization: 32.58 SS G_CDS: 1.16 Total: 33.75 kcal Atomic # 6 Polarization: -3.36 SS G_CDS: 5.31 Total: 1.95 kcal Atomic # 7 Polarization: -68.71 SS G_CDS: -0.89 Total: -69.59 kcal Atomic # 8 Polarization: -78.65 SS G_CDS: -1.08 Total: -79.73 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.06 Total: 46.95 kcal Total: -73.24 6.56 -66.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000757120184.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.696 kcal (2) G-P(sol) polarization free energy of solvation -73.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds