Wall clock time and date at job start Wed Apr 1 2020 04:16:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.46952 * 2 1 4 4 H 1.08998 * 110.55528 * 307.87996 * 3 2 1 5 5 C 1.54994 * 110.62128 * 184.99892 * 3 2 1 6 6 C 1.54812 * 102.09767 * 204.32181 * 5 3 2 7 7 C 1.54101 * 104.18639 * 20.87581 * 6 5 3 8 8 H 1.08997 * 109.88353 * 242.45865 * 7 6 5 9 9 C 1.50696 * 109.87916 * 121.45575 * 7 6 5 10 10 O 1.20831 * 120.00616 * 245.00570 * 9 7 6 11 11 O 1.34232 * 120.00079 * 65.00041 * 9 7 6 12 12 C 1.45197 * 117.00453 * 180.02562 * 11 9 7 13 13 C 1.50693 * 109.47314 * 180.02562 * 12 11 9 14 14 O 1.21283 * 120.00026 * 4.97448 * 13 12 11 15 15 N 1.34777 * 120.00113 * 184.97768 * 13 12 11 16 16 C 1.37147 * 119.99930 * 4.51728 * 15 13 12 17 17 H 1.07995 * 119.99851 * 311.71374 * 16 15 13 18 18 C 1.38891 * 119.99488 * 131.71102 * 16 15 13 19 19 N 1.31418 * 120.00594 * 352.02650 * 18 16 15 20 20 Si 1.86800 * 119.99482 * 172.02645 * 18 16 15 21 21 H 1.48504 * 109.47049 * 89.99961 * 20 18 16 22 22 H 1.48505 * 109.47057 * 209.99869 * 20 18 16 23 23 H 1.48497 * 109.47517 * 330.00086 * 20 18 16 24 24 C 1.39790 * 120.00154 * 184.52091 * 15 13 12 25 25 C 1.38955 * 120.07932 * 351.73022 * 24 15 13 26 26 C 1.38085 * 119.92254 * 179.72020 * 25 24 15 27 27 C 1.38302 * 120.07556 * 0.55290 * 26 25 24 28 28 C 1.38309 * 120.15800 * 359.72360 * 27 26 25 29 29 C 1.38076 * 120.07714 * 0.02562 * 28 27 26 30 30 O 1.43754 * 107.29516 * 2.03521 * 7 6 5 31 31 H 1.09004 * 109.47037 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47273 * 299.99638 * 1 2 3 33 33 H 1.09003 * 109.46871 * 60.00505 * 1 2 3 34 34 H 1.09001 * 109.47648 * 240.00165 * 2 1 3 35 35 H 1.08998 * 109.47434 * 119.99937 * 2 1 3 36 36 H 1.09000 * 110.90773 * 86.11929 * 5 3 2 37 37 H 1.09007 * 110.93759 * 322.53410 * 5 3 2 38 38 H 1.09006 * 110.48499 * 262.20532 * 6 5 3 39 39 H 1.08999 * 110.60508 * 139.61000 * 6 5 3 40 40 H 1.09004 * 109.47156 * 59.99597 * 12 11 9 41 41 H 1.09001 * 109.47160 * 300.00281 * 12 11 9 42 42 H 0.97000 * 120.00215 * 185.00919 * 19 18 16 43 43 H 1.08003 * 120.03730 * 359.97438 * 25 24 15 44 44 H 1.07997 * 119.95784 * 180.26061 * 26 25 24 45 45 H 1.08005 * 119.91961 * 179.74448 * 27 26 25 46 46 H 1.08003 * 119.95985 * 180.02562 * 28 27 26 47 47 H 1.08003 * 120.04066 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5767 2.0122 -0.8055 5 6 3.5844 1.4755 -0.1264 6 6 3.9329 2.8428 0.5105 7 6 2.7067 3.1770 1.3820 8 1 2.2325 4.0894 1.0205 9 6 3.1310 3.3543 2.8171 10 8 2.7408 2.5838 3.6622 11 8 3.9425 4.3682 3.1567 12 6 4.3105 4.4774 4.5570 13 6 5.2178 5.6655 4.7467 14 8 5.4519 6.4049 3.8142 15 7 5.7693 5.9065 5.9527 16 6 5.5803 5.0208 6.9825 17 1 4.5881 4.6587 7.2080 18 6 6.6648 4.5895 7.7354 19 7 7.8867 4.9034 7.3674 20 14 6.3865 3.5633 9.2712 21 1 6.3815 2.1229 8.9099 22 1 7.4759 3.8253 10.2458 23 1 5.0809 3.9256 9.8790 24 6 6.5340 7.0593 6.1538 25 6 6.8708 7.8686 5.0755 26 6 7.6214 9.0096 5.2787 27 6 8.0476 9.3414 6.5519 28 6 7.7191 8.5352 7.6266 29 6 6.9645 7.3954 7.4316 30 8 1.7928 2.0724 1.2755 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 -0.3633 0.5138 -0.8901 34 1 1.8934 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 3.8898 1.4444 -1.1723 37 1 4.0386 0.6582 0.4340 38 1 4.0696 3.5997 -0.2619 39 1 4.8283 2.7618 1.1268 40 1 4.8289 3.5705 4.8682 41 1 3.4117 4.6071 5.1599 42 1 8.6466 4.5426 7.8504 43 1 6.5424 7.6075 4.0803 44 1 7.8799 9.6412 4.4417 45 1 8.6380 10.2323 6.7073 46 1 8.0533 8.7975 8.6196 47 1 6.7080 6.7665 8.2713 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000757120185.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:16:09 Heat of formation + Delta-G solvation = -118.583247 kcal Electronic energy + Delta-G solvation = -30546.471486 eV Core-core repulsion = 26274.356705 eV Total energy + Delta-G solvation = -4272.114781 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.72460 -39.82619 -39.09599 -37.25601 -35.99084 -35.08708 -33.92318 -32.42247 -32.02946 -30.03164 -29.62784 -29.07132 -27.22191 -25.28754 -24.61478 -22.27699 -21.84494 -21.30036 -21.22442 -20.61512 -19.60920 -18.00492 -17.70192 -16.96528 -16.66830 -16.22832 -16.00535 -15.58691 -15.34739 -15.20874 -14.67907 -14.25845 -14.14912 -13.99823 -13.90942 -13.51631 -13.23494 -13.12270 -12.92787 -12.68494 -12.48174 -12.24436 -12.00007 -11.91772 -11.80574 -11.73789 -11.51281 -11.36675 -11.24653 -11.06577 -11.05551 -10.90473 -10.84552 -10.52856 -10.39277 -10.34313 -10.08233 -9.81245 -9.42439 -8.84691 -8.25937 -7.80063 -6.95341 -6.43101 -4.56438 2.32107 2.35247 2.42649 2.56062 3.00037 3.09338 3.12023 3.57916 3.67348 3.90704 4.19514 4.29293 4.48014 4.57997 4.68321 4.81884 4.84855 4.93908 5.04023 5.08998 5.12858 5.27320 5.43715 5.51195 5.52983 5.54994 5.68044 5.69876 5.75405 5.79775 5.84060 5.86895 5.90585 6.01166 6.07389 6.15152 6.56104 6.64531 6.67245 6.71053 6.84840 7.08314 7.17904 7.47052 7.58282 7.61066 7.70585 7.94042 7.98530 8.36807 8.73764 9.09535 9.45911 10.39849 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.014332 B = 0.002678 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1953.238248 B =10452.536091 C =11880.204806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.117 4.117 3 C 0.073 3.927 4 H 0.076 0.924 5 C -0.152 4.152 6 C -0.144 4.144 7 C 0.092 3.908 8 H 0.109 0.891 9 C 0.456 3.544 10 O -0.490 6.490 11 O -0.334 6.334 12 C 0.071 3.929 13 C 0.490 3.510 14 O -0.547 6.547 15 N -0.376 5.376 16 C -0.382 4.382 17 H 0.097 0.903 18 C 0.057 3.943 19 N -0.836 5.836 20 Si 0.918 3.082 21 H -0.271 1.271 22 H -0.278 1.278 23 H -0.264 1.264 24 C 0.189 3.811 25 C -0.186 4.186 26 C -0.121 4.121 27 C -0.171 4.171 28 C -0.123 4.123 29 C -0.094 4.094 30 O -0.344 6.344 31 H 0.054 0.946 32 H 0.062 0.938 33 H 0.052 0.948 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.086 0.914 37 H 0.081 0.919 38 H 0.093 0.907 39 H 0.088 0.912 40 H 0.106 0.894 41 H 0.094 0.906 42 H 0.277 0.723 43 H 0.172 0.828 44 H 0.105 0.895 45 H 0.100 0.900 46 H 0.104 0.896 47 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.302 -5.230 -11.594 14.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.155 4.155 3 C 0.016 3.984 4 H 0.094 0.906 5 C -0.189 4.189 6 C -0.182 4.182 7 C 0.032 3.968 8 H 0.127 0.873 9 C 0.297 3.703 10 O -0.376 6.376 11 O -0.249 6.249 12 C -0.005 4.005 13 C 0.281 3.719 14 O -0.430 6.430 15 N -0.085 5.085 16 C -0.508 4.508 17 H 0.115 0.885 18 C -0.154 4.154 19 N -0.467 5.467 20 Si 0.743 3.257 21 H -0.197 1.197 22 H -0.203 1.203 23 H -0.188 1.188 24 C 0.093 3.907 25 C -0.206 4.206 26 C -0.139 4.139 27 C -0.190 4.190 28 C -0.142 4.142 29 C -0.115 4.115 30 O -0.263 6.263 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.071 0.929 34 H 0.095 0.905 35 H 0.093 0.907 36 H 0.105 0.895 37 H 0.100 0.900 38 H 0.112 0.888 39 H 0.107 0.893 40 H 0.124 0.876 41 H 0.112 0.888 42 H 0.087 0.913 43 H 0.189 0.811 44 H 0.123 0.877 45 H 0.118 0.882 46 H 0.122 0.878 47 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -7.275 -5.216 -11.516 14.586 hybrid contribution 0.360 -0.585 1.114 1.308 sum -6.915 -5.801 -10.402 13.773 Atomic orbital electron populations 1.21747 0.95158 1.01683 1.02339 1.21562 0.96848 0.94062 1.03009 1.23327 0.94435 0.94596 0.86020 0.90612 1.23234 0.95880 0.97675 1.02146 1.22895 0.97683 0.98081 0.99504 1.22091 0.92036 0.93129 0.89497 0.87311 1.23406 0.76484 0.78820 0.91573 1.90683 1.52316 1.43181 1.51464 1.86444 1.60428 1.47743 1.30314 1.22636 0.99681 1.00245 0.77956 1.20100 0.83236 0.85854 0.82740 1.90253 1.63027 1.48712 1.41046 1.40858 1.42049 1.16969 1.08618 1.19460 0.95254 1.24745 1.11361 0.88501 1.25565 0.94664 0.95935 0.99246 1.69982 0.98191 1.39305 1.39203 0.86051 0.78878 0.80032 0.80748 1.19654 1.20263 1.18767 1.18044 0.93594 0.85637 0.93471 1.22637 1.00746 0.95436 1.01744 1.20837 0.99432 0.97594 0.96083 1.20776 1.04170 1.00505 0.93570 1.20713 1.00161 0.95587 0.97728 1.20780 0.98594 0.95632 0.96521 1.88998 1.55786 1.44192 1.37321 0.92681 0.91852 0.92862 0.90470 0.90732 0.89533 0.90005 0.88801 0.89306 0.87648 0.88803 0.91253 0.81149 0.87690 0.88166 0.87786 0.85775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.86 37.16 0.37 -0.86 16 2 C -0.12 -0.97 5.70 -26.73 -0.15 -1.12 16 3 C 0.07 0.68 3.28 -25.68 -0.08 0.60 16 4 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 5 C -0.15 -1.30 6.59 -24.72 -0.16 -1.46 16 6 C -0.14 -1.49 6.63 -25.20 -0.17 -1.66 16 7 C 0.09 1.18 3.96 -27.31 -0.11 1.07 16 8 H 0.11 1.17 8.14 -51.93 -0.42 0.74 16 9 C 0.46 7.76 7.06 36.00 0.25 8.02 16 10 O -0.49 -9.71 16.27 -25.39 -0.41 -10.12 16 11 O -0.33 -6.25 9.76 -45.90 -0.45 -6.69 16 12 C 0.07 1.44 4.71 36.00 0.17 1.61 16 13 C 0.49 11.53 7.65 -10.99 -0.08 11.45 16 14 O -0.55 -13.51 12.92 -14.05 -0.18 -13.69 16 15 N -0.38 -9.32 2.70 -58.98 -0.16 -9.48 16 16 C -0.38 -9.22 7.65 -14.93 -0.11 -9.34 16 17 H 0.10 2.21 7.55 -52.49 -0.40 1.81 16 18 C 0.06 1.36 3.62 -17.49 -0.06 1.30 16 19 N -0.84 -21.37 11.12 55.49 0.62 -20.75 16 20 Si 0.92 18.53 29.56 -169.99 -5.03 13.51 16 21 H -0.27 -5.49 7.11 56.52 0.40 -5.08 16 22 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 23 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 24 C 0.19 4.71 5.72 -83.69 -0.48 4.24 16 25 C -0.19 -4.42 9.04 -39.37 -0.36 -4.78 16 26 C -0.12 -2.51 10.04 -39.61 -0.40 -2.91 16 27 C -0.17 -3.39 10.04 -39.53 -0.40 -3.78 16 28 C -0.12 -2.57 10.04 -39.61 -0.40 -2.97 16 29 C -0.09 -2.23 7.56 -39.37 -0.30 -2.53 16 30 O -0.34 -4.59 10.31 -54.85 -0.57 -5.15 16 31 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.62 8.06 -51.93 -0.42 0.20 16 33 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.08 0.75 8.06 -51.93 -0.42 0.33 16 38 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 39 H 0.09 1.05 7.69 -51.93 -0.40 0.65 16 40 H 0.11 2.15 7.88 -51.93 -0.41 1.74 16 41 H 0.09 1.78 8.08 -51.93 -0.42 1.36 16 42 H 0.28 6.71 8.32 -40.82 -0.34 6.37 16 43 H 0.17 4.20 4.57 -56.05 -0.26 3.94 16 44 H 0.10 1.87 8.06 -52.49 -0.42 1.45 16 45 H 0.10 1.67 8.06 -52.48 -0.42 1.25 16 46 H 0.10 1.89 8.06 -52.48 -0.42 1.46 16 47 H 0.12 3.01 5.70 -52.48 -0.30 2.71 16 LS Contribution 388.33 15.07 5.85 5.85 Total: -1.00 -30.28 388.33 -9.60 -39.88 By element: Atomic # 1 Polarization: 16.59 SS G_CDS: -6.80 Total: 9.79 kcal Atomic # 6 Polarization: -0.66 SS G_CDS: -2.47 Total: -3.13 kcal Atomic # 7 Polarization: -30.70 SS G_CDS: 0.46 Total: -30.24 kcal Atomic # 8 Polarization: -34.05 SS G_CDS: -1.61 Total: -35.66 kcal Atomic # 14 Polarization: 18.53 SS G_CDS: -5.03 Total: 13.51 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -30.28 -9.60 -39.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000757120185.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.707 kcal (2) G-P(sol) polarization free energy of solvation -30.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds