Wall clock time and date at job start Wed Apr 1 2020 04:16:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.46952 * 2 1 4 4 H 1.08998 * 110.55528 * 307.87996 * 3 2 1 5 5 C 1.54994 * 110.62128 * 184.99892 * 3 2 1 6 6 C 1.54812 * 102.09767 * 204.32181 * 5 3 2 7 7 C 1.54101 * 104.18639 * 20.87581 * 6 5 3 8 8 H 1.08997 * 109.88353 * 242.45865 * 7 6 5 9 9 C 1.50696 * 109.87916 * 121.45575 * 7 6 5 10 10 O 1.20831 * 120.00616 * 245.00570 * 9 7 6 11 11 O 1.34232 * 120.00079 * 65.00041 * 9 7 6 12 12 C 1.45197 * 117.00453 * 180.02562 * 11 9 7 13 13 C 1.50693 * 109.47314 * 180.02562 * 12 11 9 14 14 O 1.21283 * 120.00026 * 4.97448 * 13 12 11 15 15 N 1.34777 * 120.00113 * 184.97768 * 13 12 11 16 16 C 1.37147 * 119.99930 * 4.51728 * 15 13 12 17 17 H 1.07995 * 119.99851 * 311.71374 * 16 15 13 18 18 C 1.38891 * 119.99488 * 131.71102 * 16 15 13 19 19 N 1.31418 * 120.00594 * 352.02650 * 18 16 15 20 20 Si 1.86800 * 119.99482 * 172.02645 * 18 16 15 21 21 H 1.48504 * 109.47049 * 89.99961 * 20 18 16 22 22 H 1.48505 * 109.47057 * 209.99869 * 20 18 16 23 23 H 1.48497 * 109.47517 * 330.00086 * 20 18 16 24 24 C 1.39790 * 120.00154 * 184.52091 * 15 13 12 25 25 C 1.38955 * 120.07932 * 351.73022 * 24 15 13 26 26 C 1.38085 * 119.92254 * 179.72020 * 25 24 15 27 27 C 1.38302 * 120.07556 * 0.55290 * 26 25 24 28 28 C 1.38309 * 120.15800 * 359.72360 * 27 26 25 29 29 C 1.38076 * 120.07714 * 0.02562 * 28 27 26 30 30 O 1.43754 * 107.29516 * 2.03521 * 7 6 5 31 31 H 1.09004 * 109.47037 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47273 * 299.99638 * 1 2 3 33 33 H 1.09003 * 109.46871 * 60.00505 * 1 2 3 34 34 H 1.09001 * 109.47648 * 240.00165 * 2 1 3 35 35 H 1.08998 * 109.47434 * 119.99937 * 2 1 3 36 36 H 1.09000 * 110.90773 * 86.11929 * 5 3 2 37 37 H 1.09007 * 110.93759 * 322.53410 * 5 3 2 38 38 H 1.09006 * 110.48499 * 262.20532 * 6 5 3 39 39 H 1.08999 * 110.60508 * 139.61000 * 6 5 3 40 40 H 1.09004 * 109.47156 * 59.99597 * 12 11 9 41 41 H 1.09001 * 109.47160 * 300.00281 * 12 11 9 42 42 H 0.97000 * 120.00215 * 185.00919 * 19 18 16 43 43 H 1.08003 * 120.03730 * 359.97438 * 25 24 15 44 44 H 1.07997 * 119.95784 * 180.26061 * 26 25 24 45 45 H 1.08005 * 119.91961 * 179.74448 * 27 26 25 46 46 H 1.08003 * 119.95985 * 180.02562 * 28 27 26 47 47 H 1.08003 * 120.04066 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5767 2.0122 -0.8055 5 6 3.5844 1.4755 -0.1264 6 6 3.9329 2.8428 0.5105 7 6 2.7067 3.1770 1.3820 8 1 2.2325 4.0894 1.0205 9 6 3.1310 3.3543 2.8171 10 8 2.7408 2.5838 3.6622 11 8 3.9425 4.3682 3.1567 12 6 4.3105 4.4774 4.5570 13 6 5.2178 5.6655 4.7467 14 8 5.4519 6.4049 3.8142 15 7 5.7693 5.9065 5.9527 16 6 5.5803 5.0208 6.9825 17 1 4.5881 4.6587 7.2080 18 6 6.6648 4.5895 7.7354 19 7 7.8867 4.9034 7.3674 20 14 6.3865 3.5633 9.2712 21 1 6.3815 2.1229 8.9099 22 1 7.4759 3.8253 10.2458 23 1 5.0809 3.9256 9.8790 24 6 6.5340 7.0593 6.1538 25 6 6.8708 7.8686 5.0755 26 6 7.6214 9.0096 5.2787 27 6 8.0476 9.3414 6.5519 28 6 7.7191 8.5352 7.6266 29 6 6.9645 7.3954 7.4316 30 8 1.7928 2.0724 1.2755 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 -0.3633 0.5138 -0.8901 34 1 1.8934 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 3.8898 1.4444 -1.1723 37 1 4.0386 0.6582 0.4340 38 1 4.0696 3.5997 -0.2619 39 1 4.8283 2.7618 1.1268 40 1 4.8289 3.5705 4.8682 41 1 3.4117 4.6071 5.1599 42 1 8.6466 4.5426 7.8504 43 1 6.5424 7.6075 4.0803 44 1 7.8799 9.6412 4.4417 45 1 8.6380 10.2323 6.7073 46 1 8.0533 8.7975 8.6196 47 1 6.7080 6.7665 8.2713 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000757120185.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:16:08 Heat of formation + Delta-G solvation = -133.077925 kcal Electronic energy + Delta-G solvation = -30547.100023 eV Core-core repulsion = 26274.356705 eV Total energy + Delta-G solvation = -4272.743318 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.07130 -41.45274 -40.25457 -38.95612 -37.50988 -36.89610 -34.66161 -33.88615 -33.29034 -31.60941 -31.31155 -30.19956 -28.73397 -27.12396 -25.55426 -23.62869 -23.07037 -22.87395 -22.00734 -21.88935 -21.41212 -19.75632 -19.02187 -18.12097 -18.02931 -17.68227 -17.48480 -17.22684 -16.85359 -16.60853 -16.17496 -15.84074 -15.50336 -14.97303 -14.79859 -14.75584 -14.60622 -14.53333 -14.31000 -14.03355 -13.94219 -13.83975 -13.53297 -13.29096 -13.09911 -12.91275 -12.77837 -12.75876 -12.48218 -12.45217 -12.14695 -12.11048 -11.93843 -11.78792 -11.76735 -11.57360 -11.45278 -11.22341 -10.81058 -10.63579 -10.06915 -9.52113 -8.77156 -8.24524 -6.45722 0.62841 0.82780 0.97193 1.06388 1.37651 1.42787 1.53776 1.82731 2.19820 2.58318 2.86763 2.89092 3.34526 3.37967 3.52458 3.76129 3.76933 3.81076 4.02327 4.13806 4.15980 4.18104 4.29564 4.33344 4.36326 4.37595 4.53411 4.59846 4.76359 4.85673 4.91246 4.92911 4.96980 4.97921 5.09014 5.10798 5.11225 5.18416 5.22393 5.28968 5.41302 5.43139 5.75854 5.77485 5.83670 5.88039 5.98174 6.18632 6.52760 6.59585 6.88544 7.26870 7.62441 8.57555 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.014332 B = 0.002678 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1953.238248 B =10452.536091 C =11880.204806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.117 4.117 3 C 0.067 3.933 4 H 0.100 0.900 5 C -0.145 4.145 6 C -0.143 4.143 7 C 0.094 3.906 8 H 0.135 0.865 9 C 0.454 3.546 10 O -0.524 6.524 11 O -0.339 6.339 12 C 0.082 3.918 13 C 0.479 3.521 14 O -0.566 6.566 15 N -0.388 5.388 16 C -0.395 4.395 17 H 0.104 0.896 18 C 0.023 3.977 19 N -0.869 5.869 20 Si 0.982 3.018 21 H -0.270 1.270 22 H -0.275 1.275 23 H -0.256 1.256 24 C 0.157 3.843 25 C -0.211 4.211 26 C -0.119 4.119 27 C -0.161 4.161 28 C -0.124 4.124 29 C -0.113 4.113 30 O -0.373 6.373 31 H 0.063 0.937 32 H 0.038 0.962 33 H 0.067 0.933 34 H 0.105 0.895 35 H 0.054 0.946 36 H 0.119 0.881 37 H 0.070 0.930 38 H 0.121 0.879 39 H 0.067 0.933 40 H 0.099 0.901 41 H 0.103 0.897 42 H 0.277 0.723 43 H 0.158 0.842 44 H 0.136 0.864 45 H 0.143 0.857 46 H 0.134 0.866 47 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.106 -4.750 -12.593 15.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.155 4.155 3 C 0.010 3.990 4 H 0.118 0.882 5 C -0.183 4.183 6 C -0.181 4.181 7 C 0.035 3.965 8 H 0.152 0.848 9 C 0.297 3.703 10 O -0.413 6.413 11 O -0.255 6.255 12 C 0.005 3.995 13 C 0.270 3.730 14 O -0.451 6.451 15 N -0.097 5.097 16 C -0.521 4.521 17 H 0.121 0.879 18 C -0.184 4.184 19 N -0.501 5.501 20 Si 0.804 3.196 21 H -0.196 1.196 22 H -0.200 1.200 23 H -0.180 1.180 24 C 0.061 3.939 25 C -0.231 4.231 26 C -0.138 4.138 27 C -0.180 4.180 28 C -0.142 4.142 29 C -0.134 4.134 30 O -0.293 6.293 31 H 0.082 0.918 32 H 0.057 0.943 33 H 0.086 0.914 34 H 0.123 0.877 35 H 0.072 0.928 36 H 0.138 0.862 37 H 0.089 0.911 38 H 0.140 0.860 39 H 0.086 0.914 40 H 0.117 0.883 41 H 0.121 0.879 42 H 0.087 0.913 43 H 0.174 0.826 44 H 0.154 0.846 45 H 0.161 0.839 46 H 0.151 0.849 47 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -7.089 -4.731 -12.529 15.153 hybrid contribution 0.307 -0.676 1.376 1.564 sum -6.782 -5.407 -11.153 14.129 Atomic orbital electron populations 1.21739 0.95101 1.02155 1.01831 1.21615 0.96912 0.93595 1.03353 1.23654 0.95162 0.95151 0.84992 0.88203 1.23254 0.95232 0.96030 1.03737 1.22970 0.95543 1.00128 0.99447 1.22345 0.93393 0.94314 0.86443 0.84797 1.24481 0.75093 0.77467 0.93278 1.90657 1.53535 1.44210 1.52860 1.86466 1.61060 1.48747 1.29193 1.22373 0.99319 0.98463 0.79320 1.20573 0.83496 0.86513 0.82421 1.90229 1.63833 1.49568 1.41465 1.41083 1.42207 1.17335 1.09046 1.19779 0.95859 1.24917 1.11573 0.87867 1.26300 0.94103 0.96588 1.01452 1.70099 0.98961 1.40504 1.40499 0.85093 0.78967 0.78275 0.77249 1.19556 1.20010 1.17972 1.18413 0.94709 0.86312 0.94483 1.22668 1.02412 0.97009 1.00968 1.21216 0.98027 0.96661 0.97891 1.21220 1.03102 1.01220 0.92488 1.21110 0.98866 0.94520 0.99726 1.20821 1.00016 0.96892 0.95659 1.88986 1.55969 1.44628 1.39682 0.91789 0.94294 0.91362 0.87697 0.92759 0.86228 0.91134 0.86032 0.91379 0.88301 0.87926 0.91308 0.82562 0.84577 0.83945 0.84863 0.87159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.25 9.86 71.98 0.71 -1.54 16 2 C -0.12 -1.77 5.70 30.59 0.17 -1.59 16 3 C 0.07 1.12 3.28 31.28 0.10 1.22 16 4 H 0.10 1.21 8.14 -2.39 -0.02 1.20 16 5 C -0.15 -2.19 6.59 31.89 0.21 -1.98 16 6 C -0.14 -2.78 6.63 31.59 0.21 -2.57 16 7 C 0.09 2.36 3.96 30.22 0.12 2.48 16 8 H 0.13 2.67 8.14 -2.39 -0.02 2.65 16 9 C 0.45 15.86 7.06 71.23 0.50 16.36 16 10 O -0.52 -21.60 16.27 28.29 0.46 -21.14 16 11 O -0.34 -13.12 9.76 -45.10 -0.44 -13.56 16 12 C 0.08 3.46 4.71 71.23 0.34 3.79 16 13 C 0.48 23.52 7.65 87.65 0.67 24.19 16 14 O -0.57 -29.13 12.92 15.71 0.20 -28.93 16 15 N -0.39 -19.96 2.70 -458.90 -1.24 -21.20 16 16 C -0.40 -19.68 7.65 84.02 0.64 -19.03 16 17 H 0.10 4.84 7.55 -2.91 -0.02 4.82 16 18 C 0.02 1.12 3.62 84.91 0.31 1.43 16 19 N -0.87 -45.36 11.12 21.65 0.24 -45.12 16 20 Si 0.98 38.36 29.56 68.60 2.03 40.38 16 21 H -0.27 -10.46 7.11 99.48 0.71 -9.75 16 22 H -0.28 -10.56 7.11 99.48 0.71 -9.85 16 23 H -0.26 -9.59 7.11 99.48 0.71 -8.88 16 24 C 0.16 8.03 5.72 38.22 0.22 8.24 16 25 C -0.21 -10.18 9.04 22.41 0.20 -9.97 16 26 C -0.12 -4.77 10.04 22.25 0.22 -4.55 16 27 C -0.16 -5.93 10.04 22.30 0.22 -5.71 16 28 C -0.12 -4.96 10.04 22.25 0.22 -4.73 16 29 C -0.11 -5.39 7.56 22.41 0.17 -5.22 16 30 O -0.37 -9.80 10.31 -130.22 -1.34 -11.14 16 31 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.04 0.76 8.06 -2.39 -0.02 0.74 16 33 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.07 1.22 8.06 -2.38 -0.02 1.21 16 38 H 0.12 1.68 8.14 -2.38 -0.02 1.67 16 39 H 0.07 1.61 7.69 -2.39 -0.02 1.60 16 40 H 0.10 4.26 7.88 -2.39 -0.02 4.24 16 41 H 0.10 4.08 8.08 -2.39 -0.02 4.06 16 42 H 0.28 13.67 8.32 -92.71 -0.77 12.90 16 43 H 0.16 7.97 4.57 -59.29 -0.27 7.70 16 44 H 0.14 4.49 8.06 -2.91 -0.02 4.47 16 45 H 0.14 4.04 8.06 -2.91 -0.02 4.02 16 46 H 0.13 4.47 8.06 -2.91 -0.02 4.44 16 47 H 0.11 5.47 5.70 -2.91 -0.02 5.45 16 Total: -1.00 -68.52 388.33 5.88 -62.64 By element: Atomic # 1 Polarization: 36.53 SS G_CDS: 0.72 Total: 37.25 kcal Atomic # 6 Polarization: -4.43 SS G_CDS: 5.25 Total: 0.82 kcal Atomic # 7 Polarization: -65.32 SS G_CDS: -1.00 Total: -66.32 kcal Atomic # 8 Polarization: -73.65 SS G_CDS: -1.12 Total: -74.77 kcal Atomic # 14 Polarization: 38.36 SS G_CDS: 2.03 Total: 40.38 kcal Total: -68.52 5.88 -62.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000757120185.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.436 kcal (2) G-P(sol) polarization free energy of solvation -68.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds