Wall clock time and date at job start Wed Apr 1 2020 04:16:08
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 C 1.52998 * 109.46952 * 2 1
4 4 H 1.08998 * 110.55528 * 307.87996 * 3 2 1
5 5 C 1.54994 * 110.62128 * 184.99892 * 3 2 1
6 6 C 1.54812 * 102.09767 * 204.32181 * 5 3 2
7 7 C 1.54101 * 104.18639 * 20.87581 * 6 5 3
8 8 H 1.08997 * 109.88353 * 242.45865 * 7 6 5
9 9 C 1.50696 * 109.87916 * 121.45575 * 7 6 5
10 10 O 1.20831 * 120.00616 * 245.00570 * 9 7 6
11 11 O 1.34232 * 120.00079 * 65.00041 * 9 7 6
12 12 C 1.45197 * 117.00453 * 180.02562 * 11 9 7
13 13 C 1.50693 * 109.47314 * 180.02562 * 12 11 9
14 14 O 1.21283 * 120.00026 * 4.97448 * 13 12 11
15 15 N 1.34777 * 120.00113 * 184.97768 * 13 12 11
16 16 C 1.37147 * 119.99930 * 4.51728 * 15 13 12
17 17 H 1.07995 * 119.99851 * 311.71374 * 16 15 13
18 18 C 1.38891 * 119.99488 * 131.71102 * 16 15 13
19 19 N 1.31418 * 120.00594 * 352.02650 * 18 16 15
20 20 Si 1.86800 * 119.99482 * 172.02645 * 18 16 15
21 21 H 1.48504 * 109.47049 * 89.99961 * 20 18 16
22 22 H 1.48505 * 109.47057 * 209.99869 * 20 18 16
23 23 H 1.48497 * 109.47517 * 330.00086 * 20 18 16
24 24 C 1.39790 * 120.00154 * 184.52091 * 15 13 12
25 25 C 1.38955 * 120.07932 * 351.73022 * 24 15 13
26 26 C 1.38085 * 119.92254 * 179.72020 * 25 24 15
27 27 C 1.38302 * 120.07556 * 0.55290 * 26 25 24
28 28 C 1.38309 * 120.15800 * 359.72360 * 27 26 25
29 29 C 1.38076 * 120.07714 * 0.02562 * 28 27 26
30 30 O 1.43754 * 107.29516 * 2.03521 * 7 6 5
31 31 H 1.09004 * 109.47037 * 179.97438 * 1 2 3
32 32 H 1.08995 * 109.47273 * 299.99638 * 1 2 3
33 33 H 1.09003 * 109.46871 * 60.00505 * 1 2 3
34 34 H 1.09001 * 109.47648 * 240.00165 * 2 1 3
35 35 H 1.08998 * 109.47434 * 119.99937 * 2 1 3
36 36 H 1.09000 * 110.90773 * 86.11929 * 5 3 2
37 37 H 1.09007 * 110.93759 * 322.53410 * 5 3 2
38 38 H 1.09006 * 110.48499 * 262.20532 * 6 5 3
39 39 H 1.08999 * 110.60508 * 139.61000 * 6 5 3
40 40 H 1.09004 * 109.47156 * 59.99597 * 12 11 9
41 41 H 1.09001 * 109.47160 * 300.00281 * 12 11 9
42 42 H 0.97000 * 120.00215 * 185.00919 * 19 18 16
43 43 H 1.08003 * 120.03730 * 359.97438 * 25 24 15
44 44 H 1.07997 * 119.95784 * 180.26061 * 26 25 24
45 45 H 1.08005 * 119.91961 * 179.74448 * 27 26 25
46 46 H 1.08003 * 119.95985 * 180.02562 * 28 27 26
47 47 H 1.08003 * 120.04066 * 180.02562 * 29 28 27
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4425 0.0000
4 1 1.5767 2.0122 -0.8055
5 6 3.5844 1.4755 -0.1264
6 6 3.9329 2.8428 0.5105
7 6 2.7067 3.1770 1.3820
8 1 2.2325 4.0894 1.0205
9 6 3.1310 3.3543 2.8171
10 8 2.7408 2.5838 3.6622
11 8 3.9425 4.3682 3.1567
12 6 4.3105 4.4774 4.5570
13 6 5.2178 5.6655 4.7467
14 8 5.4519 6.4049 3.8142
15 7 5.7693 5.9065 5.9527
16 6 5.5803 5.0208 6.9825
17 1 4.5881 4.6587 7.2080
18 6 6.6648 4.5895 7.7354
19 7 7.8867 4.9034 7.3674
20 14 6.3865 3.5633 9.2712
21 1 6.3815 2.1229 8.9099
22 1 7.4759 3.8253 10.2458
23 1 5.0809 3.9256 9.8790
24 6 6.5340 7.0593 6.1538
25 6 6.8708 7.8686 5.0755
26 6 7.6214 9.0096 5.2787
27 6 8.0476 9.3414 6.5519
28 6 7.7191 8.5352 7.6266
29 6 6.9645 7.3954 7.4316
30 8 1.7928 2.0724 1.2755
31 1 -0.3633 -1.0277 -0.0005
32 1 -0.3633 0.5137 0.8900
33 1 -0.3633 0.5138 -0.8901
34 1 1.8934 -0.5138 -0.8900
35 1 1.8934 -0.5138 0.8900
36 1 3.8898 1.4444 -1.1723
37 1 4.0386 0.6582 0.4340
38 1 4.0696 3.5997 -0.2619
39 1 4.8283 2.7618 1.1268
40 1 4.8289 3.5705 4.8682
41 1 3.4117 4.6071 5.1599
42 1 8.6466 4.5426 7.8504
43 1 6.5424 7.6075 4.0803
44 1 7.8799 9.6412 4.4417
45 1 8.6380 10.2323 6.7073
46 1 8.0533 8.7975 8.6196
47 1 6.7080 6.7665 8.2713
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000757120185.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:16:08
Heat of formation + Delta-G solvation = -133.077925 kcal
Electronic energy + Delta-G solvation = -30547.100023 eV
Core-core repulsion = 26274.356705 eV
Total energy + Delta-G solvation = -4272.743318 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 347.161 amu
Computer time = 0.85 seconds
Orbital eigenvalues (eV)
-42.07130 -41.45274 -40.25457 -38.95612 -37.50988 -36.89610 -34.66161 -33.88615
-33.29034 -31.60941 -31.31155 -30.19956 -28.73397 -27.12396 -25.55426 -23.62869
-23.07037 -22.87395 -22.00734 -21.88935 -21.41212 -19.75632 -19.02187 -18.12097
-18.02931 -17.68227 -17.48480 -17.22684 -16.85359 -16.60853 -16.17496 -15.84074
-15.50336 -14.97303 -14.79859 -14.75584 -14.60622 -14.53333 -14.31000 -14.03355
-13.94219 -13.83975 -13.53297 -13.29096 -13.09911 -12.91275 -12.77837 -12.75876
-12.48218 -12.45217 -12.14695 -12.11048 -11.93843 -11.78792 -11.76735 -11.57360
-11.45278 -11.22341 -10.81058 -10.63579 -10.06915 -9.52113 -8.77156 -8.24524
-6.45722 0.62841 0.82780 0.97193 1.06388 1.37651 1.42787 1.53776
1.82731 2.19820 2.58318 2.86763 2.89092 3.34526 3.37967 3.52458
3.76129 3.76933 3.81076 4.02327 4.13806 4.15980 4.18104 4.29564
4.33344 4.36326 4.37595 4.53411 4.59846 4.76359 4.85673 4.91246
4.92911 4.96980 4.97921 5.09014 5.10798 5.11225 5.18416 5.22393
5.28968 5.41302 5.43139 5.75854 5.77485 5.83670 5.88039 5.98174
6.18632 6.52760 6.59585 6.88544 7.26870 7.62441 8.57555
Molecular weight = 347.16amu
Principal moments of inertia in cm(-1)
A = 0.014332 B = 0.002678 C = 0.002356
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1953.238248 B =10452.536091 C =11880.204806
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.151 4.151
2 C -0.117 4.117
3 C 0.067 3.933
4 H 0.100 0.900
5 C -0.145 4.145
6 C -0.143 4.143
7 C 0.094 3.906
8 H 0.135 0.865
9 C 0.454 3.546
10 O -0.524 6.524
11 O -0.339 6.339
12 C 0.082 3.918
13 C 0.479 3.521
14 O -0.566 6.566
15 N -0.388 5.388
16 C -0.395 4.395
17 H 0.104 0.896
18 C 0.023 3.977
19 N -0.869 5.869
20 Si 0.982 3.018
21 H -0.270 1.270
22 H -0.275 1.275
23 H -0.256 1.256
24 C 0.157 3.843
25 C -0.211 4.211
26 C -0.119 4.119
27 C -0.161 4.161
28 C -0.124 4.124
29 C -0.113 4.113
30 O -0.373 6.373
31 H 0.063 0.937
32 H 0.038 0.962
33 H 0.067 0.933
34 H 0.105 0.895
35 H 0.054 0.946
36 H 0.119 0.881
37 H 0.070 0.930
38 H 0.121 0.879
39 H 0.067 0.933
40 H 0.099 0.901
41 H 0.103 0.897
42 H 0.277 0.723
43 H 0.158 0.842
44 H 0.136 0.864
45 H 0.143 0.857
46 H 0.134 0.866
47 H 0.110 0.890
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.106 -4.750 -12.593 15.220
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.208 4.208
2 C -0.155 4.155
3 C 0.010 3.990
4 H 0.118 0.882
5 C -0.183 4.183
6 C -0.181 4.181
7 C 0.035 3.965
8 H 0.152 0.848
9 C 0.297 3.703
10 O -0.413 6.413
11 O -0.255 6.255
12 C 0.005 3.995
13 C 0.270 3.730
14 O -0.451 6.451
15 N -0.097 5.097
16 C -0.521 4.521
17 H 0.121 0.879
18 C -0.184 4.184
19 N -0.501 5.501
20 Si 0.804 3.196
21 H -0.196 1.196
22 H -0.200 1.200
23 H -0.180 1.180
24 C 0.061 3.939
25 C -0.231 4.231
26 C -0.138 4.138
27 C -0.180 4.180
28 C -0.142 4.142
29 C -0.134 4.134
30 O -0.293 6.293
31 H 0.082 0.918
32 H 0.057 0.943
33 H 0.086 0.914
34 H 0.123 0.877
35 H 0.072 0.928
36 H 0.138 0.862
37 H 0.089 0.911
38 H 0.140 0.860
39 H 0.086 0.914
40 H 0.117 0.883
41 H 0.121 0.879
42 H 0.087 0.913
43 H 0.174 0.826
44 H 0.154 0.846
45 H 0.161 0.839
46 H 0.151 0.849
47 H 0.128 0.872
Dipole moment (debyes) X Y Z Total
from point charges -7.089 -4.731 -12.529 15.153
hybrid contribution 0.307 -0.676 1.376 1.564
sum -6.782 -5.407 -11.153 14.129
Atomic orbital electron populations
1.21739 0.95101 1.02155 1.01831 1.21615 0.96912 0.93595 1.03353
1.23654 0.95162 0.95151 0.84992 0.88203 1.23254 0.95232 0.96030
1.03737 1.22970 0.95543 1.00128 0.99447 1.22345 0.93393 0.94314
0.86443 0.84797 1.24481 0.75093 0.77467 0.93278 1.90657 1.53535
1.44210 1.52860 1.86466 1.61060 1.48747 1.29193 1.22373 0.99319
0.98463 0.79320 1.20573 0.83496 0.86513 0.82421 1.90229 1.63833
1.49568 1.41465 1.41083 1.42207 1.17335 1.09046 1.19779 0.95859
1.24917 1.11573 0.87867 1.26300 0.94103 0.96588 1.01452 1.70099
0.98961 1.40504 1.40499 0.85093 0.78967 0.78275 0.77249 1.19556
1.20010 1.17972 1.18413 0.94709 0.86312 0.94483 1.22668 1.02412
0.97009 1.00968 1.21216 0.98027 0.96661 0.97891 1.21220 1.03102
1.01220 0.92488 1.21110 0.98866 0.94520 0.99726 1.20821 1.00016
0.96892 0.95659 1.88986 1.55969 1.44628 1.39682 0.91789 0.94294
0.91362 0.87697 0.92759 0.86228 0.91134 0.86032 0.91379 0.88301
0.87926 0.91308 0.82562 0.84577 0.83945 0.84863 0.87159
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.25 9.86 71.98 0.71 -1.54 16
2 C -0.12 -1.77 5.70 30.59 0.17 -1.59 16
3 C 0.07 1.12 3.28 31.28 0.10 1.22 16
4 H 0.10 1.21 8.14 -2.39 -0.02 1.20 16
5 C -0.15 -2.19 6.59 31.89 0.21 -1.98 16
6 C -0.14 -2.78 6.63 31.59 0.21 -2.57 16
7 C 0.09 2.36 3.96 30.22 0.12 2.48 16
8 H 0.13 2.67 8.14 -2.39 -0.02 2.65 16
9 C 0.45 15.86 7.06 71.23 0.50 16.36 16
10 O -0.52 -21.60 16.27 28.29 0.46 -21.14 16
11 O -0.34 -13.12 9.76 -45.10 -0.44 -13.56 16
12 C 0.08 3.46 4.71 71.23 0.34 3.79 16
13 C 0.48 23.52 7.65 87.65 0.67 24.19 16
14 O -0.57 -29.13 12.92 15.71 0.20 -28.93 16
15 N -0.39 -19.96 2.70 -458.90 -1.24 -21.20 16
16 C -0.40 -19.68 7.65 84.02 0.64 -19.03 16
17 H 0.10 4.84 7.55 -2.91 -0.02 4.82 16
18 C 0.02 1.12 3.62 84.91 0.31 1.43 16
19 N -0.87 -45.36 11.12 21.65 0.24 -45.12 16
20 Si 0.98 38.36 29.56 68.60 2.03 40.38 16
21 H -0.27 -10.46 7.11 99.48 0.71 -9.75 16
22 H -0.28 -10.56 7.11 99.48 0.71 -9.85 16
23 H -0.26 -9.59 7.11 99.48 0.71 -8.88 16
24 C 0.16 8.03 5.72 38.22 0.22 8.24 16
25 C -0.21 -10.18 9.04 22.41 0.20 -9.97 16
26 C -0.12 -4.77 10.04 22.25 0.22 -4.55 16
27 C -0.16 -5.93 10.04 22.30 0.22 -5.71 16
28 C -0.12 -4.96 10.04 22.25 0.22 -4.73 16
29 C -0.11 -5.39 7.56 22.41 0.17 -5.22 16
30 O -0.37 -9.80 10.31 -130.22 -1.34 -11.14 16
31 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16
32 H 0.04 0.76 8.06 -2.39 -0.02 0.74 16
33 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16
34 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16
35 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16
36 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16
37 H 0.07 1.22 8.06 -2.38 -0.02 1.21 16
38 H 0.12 1.68 8.14 -2.38 -0.02 1.67 16
39 H 0.07 1.61 7.69 -2.39 -0.02 1.60 16
40 H 0.10 4.26 7.88 -2.39 -0.02 4.24 16
41 H 0.10 4.08 8.08 -2.39 -0.02 4.06 16
42 H 0.28 13.67 8.32 -92.71 -0.77 12.90 16
43 H 0.16 7.97 4.57 -59.29 -0.27 7.70 16
44 H 0.14 4.49 8.06 -2.91 -0.02 4.47 16
45 H 0.14 4.04 8.06 -2.91 -0.02 4.02 16
46 H 0.13 4.47 8.06 -2.91 -0.02 4.44 16
47 H 0.11 5.47 5.70 -2.91 -0.02 5.45 16
Total: -1.00 -68.52 388.33 5.88 -62.64
By element:
Atomic # 1 Polarization: 36.53 SS G_CDS: 0.72 Total: 37.25 kcal
Atomic # 6 Polarization: -4.43 SS G_CDS: 5.25 Total: 0.82 kcal
Atomic # 7 Polarization: -65.32 SS G_CDS: -1.00 Total: -66.32 kcal
Atomic # 8 Polarization: -73.65 SS G_CDS: -1.12 Total: -74.77 kcal
Atomic # 14 Polarization: 38.36 SS G_CDS: 2.03 Total: 40.38 kcal
Total: -68.52 5.88 -62.64 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000757120185.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -70.436 kcal
(2) G-P(sol) polarization free energy of solvation -68.517 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.953 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.876 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.642 kcal
(6) G-S(sol) free energy of system = (1) + (5) -133.078 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.86 seconds