Wall clock time and date at job start Wed Apr 1 2020 04:16:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52994 * 109.47296 * 2 1 4 4 H 1.09001 * 109.82822 * 54.43449 * 3 2 1 5 5 C 1.54392 * 109.90582 * 175.36647 * 3 2 1 6 6 C 1.55412 * 102.30954 * 140.84400 * 5 3 2 7 7 C 1.54953 * 100.89121 * 325.98721 * 6 5 3 8 8 H 1.08993 * 110.31159 * 277.36207 * 7 6 5 9 9 C 1.50702 * 110.30744 * 155.29071 * 7 6 5 10 10 O 1.20831 * 119.99680 * 246.39464 * 9 7 6 11 11 O 1.34231 * 120.00144 * 66.39145 * 9 7 6 12 12 C 1.45194 * 116.99791 * 185.07999 * 11 9 7 13 13 C 1.50703 * 109.46784 * 184.91744 * 12 11 9 14 14 O 1.21283 * 120.00111 * 355.00151 * 13 12 11 15 15 N 1.34779 * 120.00118 * 175.00262 * 13 12 11 16 16 C 1.37142 * 119.99607 * 3.52343 * 15 13 12 17 17 H 1.08001 * 120.00384 * 305.42145 * 16 15 13 18 18 C 1.38895 * 119.99765 * 125.42752 * 16 15 13 19 19 N 1.31420 * 119.99955 * 181.50332 * 18 16 15 20 20 Si 1.86799 * 120.00025 * 1.50731 * 18 16 15 21 21 H 1.48492 * 109.47056 * 95.26103 * 20 18 16 22 22 H 1.48500 * 109.46879 * 215.26228 * 20 18 16 23 23 H 1.48497 * 109.46891 * 335.25757 * 20 18 16 24 24 C 1.39789 * 120.00228 * 183.52197 * 15 13 12 25 25 C 1.38961 * 120.07611 * 171.71128 * 24 15 13 26 26 C 1.38086 * 119.91840 * 179.72615 * 25 24 15 27 27 C 1.38309 * 120.07969 * 0.25510 * 26 25 24 28 28 C 1.38317 * 120.15444 * 0.02562 * 27 26 25 29 29 C 1.38083 * 120.07800 * 359.97438 * 28 27 26 30 30 O 1.43237 * 109.83551 * 293.54334 * 3 2 1 31 31 H 1.09002 * 109.47757 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47563 * 300.00192 * 1 2 3 33 33 H 1.09003 * 109.46834 * 60.00033 * 1 2 3 34 34 H 1.09006 * 109.47183 * 239.99789 * 2 1 3 35 35 H 1.09003 * 109.46834 * 119.99967 * 2 1 3 36 36 H 1.09004 * 110.84471 * 259.10510 * 5 3 2 37 37 H 1.08997 * 110.84957 * 22.51851 * 5 3 2 38 38 H 1.09006 * 111.20920 * 208.06562 * 6 5 3 39 39 H 1.08999 * 111.08783 * 83.86598 * 6 5 3 40 40 H 1.09002 * 109.47635 * 64.91992 * 12 11 9 41 41 H 1.09002 * 109.47432 * 304.91614 * 12 11 9 42 42 H 0.96998 * 120.00135 * 179.97438 * 19 18 16 43 43 H 1.07995 * 120.03813 * 0.02562 * 25 24 15 44 44 H 1.07998 * 119.96251 * 180.28237 * 26 25 24 45 45 H 1.07997 * 119.92059 * 179.97438 * 27 26 25 46 46 H 1.07997 * 119.96032 * 179.97438 * 28 27 26 47 47 H 1.07996 * 120.03758 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6009 1.9898 0.8341 5 6 3.5794 1.4557 0.1173 6 6 3.9751 2.6096 -0.8456 7 6 2.8863 2.4653 -1.9386 8 1 3.1690 1.6938 -2.6548 9 6 2.6754 3.7804 -2.6437 10 8 1.6247 4.3659 -2.5287 11 8 3.6549 4.3014 -3.3994 12 6 3.4257 5.6225 -3.9564 13 6 4.5699 5.9895 -4.8660 14 8 5.5305 5.2550 -4.9587 15 7 4.5257 7.1340 -5.5764 16 6 3.4738 7.9995 -5.4174 17 1 2.4607 7.6472 -5.5435 18 6 3.7114 9.3293 -5.0942 19 7 2.7027 10.1518 -4.9127 20 14 5.4649 9.9486 -4.9176 21 1 5.9068 10.5555 -6.1987 22 1 5.5233 10.9689 -3.8402 23 1 6.3584 8.8135 -4.5733 24 6 5.5519 7.4388 -6.4753 25 6 5.4274 8.5260 -7.3318 26 6 6.4456 8.8275 -8.2145 27 6 7.5860 8.0459 -8.2504 28 6 7.7108 6.9596 -7.4034 29 6 6.6966 6.6522 -6.5181 30 8 1.6946 2.0801 -1.2352 31 1 -0.3635 -1.0276 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 1.8933 -0.5139 -0.8900 35 1 1.8932 -0.5138 0.8900 36 1 3.8887 1.6784 1.1385 37 1 4.0020 0.5079 -0.2162 38 1 4.9710 2.4533 -1.2602 39 1 3.9062 3.5768 -0.3477 40 1 3.3562 6.3506 -3.1482 41 1 2.4957 5.6209 -4.5249 42 1 2.8686 11.0803 -4.6867 43 1 4.5375 9.1372 -7.3037 44 1 6.3515 9.6750 -8.8773 45 1 8.3806 8.2838 -8.9421 46 1 8.6025 6.3511 -7.4344 47 1 6.7949 5.8041 -5.8568 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000757120186.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:16:11 Heat of formation + Delta-G solvation = -113.922851 kcal Electronic energy + Delta-G solvation = -30618.198789 eV Core-core repulsion = 26346.286098 eV Total energy + Delta-G solvation = -4271.912691 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.76184 -40.16894 -39.25014 -37.62538 -36.07090 -35.23131 -33.84998 -32.47861 -32.32468 -30.25914 -30.12824 -29.20814 -27.41654 -25.36574 -24.65956 -22.36956 -22.10783 -21.62180 -21.33801 -20.35334 -19.62018 -18.32084 -18.07575 -16.90371 -16.62424 -16.44074 -16.06364 -15.85517 -15.65713 -15.38505 -14.57409 -14.51007 -14.25729 -14.03074 -13.75200 -13.43960 -13.38522 -13.28117 -13.11282 -12.87360 -12.82721 -12.57305 -12.25625 -12.14522 -12.06143 -11.88110 -11.71368 -11.42789 -11.24298 -11.16361 -11.08410 -10.98387 -10.73285 -10.42105 -10.38125 -10.31845 -10.16361 -9.72052 -9.49778 -9.09493 -8.53827 -8.10938 -7.18239 -6.64465 -4.63919 1.93880 2.08675 2.30309 2.33651 3.08473 3.18376 3.27438 3.34846 3.61507 3.97261 4.02540 4.18124 4.35843 4.50830 4.61916 4.74716 4.75553 4.80856 4.88432 5.07619 5.10103 5.18120 5.27798 5.42873 5.48948 5.55133 5.59549 5.60939 5.63739 5.69188 5.70326 5.75168 5.79368 5.84361 5.97033 6.09830 6.21317 6.30994 6.45478 6.59322 6.68418 6.72348 7.08785 7.15550 7.21710 7.27500 7.62641 7.85755 7.90952 8.07118 8.63310 8.92220 9.18656 10.37235 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.017806 B = 0.002584 C = 0.002394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.162581 B =10831.757154 C =11692.662150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.132 4.132 3 C 0.076 3.924 4 H 0.084 0.916 5 C -0.150 4.150 6 C -0.143 4.143 7 C 0.094 3.906 8 H 0.111 0.889 9 C 0.456 3.544 10 O -0.486 6.486 11 O -0.337 6.337 12 C 0.072 3.928 13 C 0.503 3.497 14 O -0.541 6.541 15 N -0.402 5.402 16 C -0.381 4.381 17 H 0.112 0.888 18 C 0.085 3.915 19 N -0.851 5.851 20 Si 0.873 3.127 21 H -0.253 1.253 22 H -0.289 1.289 23 H -0.257 1.257 24 C 0.159 3.841 25 C -0.158 4.158 26 C -0.105 4.105 27 C -0.169 4.169 28 C -0.108 4.108 29 C -0.183 4.183 30 O -0.347 6.347 31 H 0.052 0.948 32 H 0.053 0.947 33 H 0.063 0.937 34 H 0.068 0.932 35 H 0.073 0.927 36 H 0.087 0.913 37 H 0.084 0.916 38 H 0.102 0.898 39 H 0.086 0.914 40 H 0.107 0.893 41 H 0.103 0.897 42 H 0.281 0.719 43 H 0.140 0.860 44 H 0.114 0.886 45 H 0.109 0.891 46 H 0.114 0.886 47 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.015 -14.116 7.322 16.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.169 4.169 3 C 0.019 3.981 4 H 0.102 0.898 5 C -0.187 4.187 6 C -0.180 4.180 7 C 0.035 3.965 8 H 0.128 0.872 9 C 0.297 3.703 10 O -0.371 6.371 11 O -0.252 6.252 12 C -0.004 4.004 13 C 0.294 3.706 14 O -0.423 6.423 15 N -0.112 5.112 16 C -0.507 4.507 17 H 0.130 0.870 18 C -0.126 4.126 19 N -0.483 5.483 20 Si 0.699 3.301 21 H -0.177 1.177 22 H -0.216 1.216 23 H -0.180 1.180 24 C 0.063 3.937 25 C -0.179 4.179 26 C -0.123 4.123 27 C -0.188 4.188 28 C -0.127 4.127 29 C -0.203 4.203 30 O -0.266 6.266 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.091 0.909 36 H 0.106 0.894 37 H 0.102 0.898 38 H 0.120 0.880 39 H 0.104 0.896 40 H 0.125 0.875 41 H 0.121 0.879 42 H 0.092 0.908 43 H 0.157 0.843 44 H 0.133 0.867 45 H 0.128 0.872 46 H 0.132 0.868 47 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 2.771 -14.059 7.322 16.091 hybrid contribution 0.654 0.914 -0.013 1.124 sum 3.425 -13.145 7.308 15.425 Atomic orbital electron populations 1.21723 0.95141 1.01401 1.02599 1.21905 0.97191 0.95353 1.02499 1.22927 0.94454 0.93701 0.87039 0.89777 1.23230 0.95025 0.99365 1.01127 1.23248 0.99349 1.00275 0.95165 1.22290 0.86691 0.92008 0.95462 0.87186 1.23381 0.82187 0.87381 0.77380 1.90712 1.26894 1.60983 1.58538 1.86420 1.44262 1.34086 1.60470 1.22601 0.98747 0.80657 0.98388 1.20201 0.87240 0.82454 0.80745 1.90251 1.33629 1.52720 1.65679 1.41238 1.19809 1.18417 1.31776 1.19100 0.87001 0.91319 1.53315 0.87037 1.25495 0.98408 0.96142 0.92576 1.69647 1.31373 1.05798 1.41460 0.86956 0.84038 0.80040 0.79074 1.17730 1.21601 1.18042 1.18447 0.89634 0.95007 0.90614 1.21036 1.00838 0.98886 0.97102 1.20830 0.93777 0.99219 0.98506 1.20942 0.98473 0.97690 1.01742 1.21028 0.98374 0.97034 0.96271 1.22775 0.92401 1.03135 1.01965 1.88553 1.27252 1.77652 1.33157 0.92910 0.92821 0.91764 0.91299 0.90885 0.89400 0.89763 0.87954 0.89582 0.87466 0.87934 0.90824 0.84266 0.86749 0.87247 0.86833 0.80438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.82 37.15 0.36 -0.89 16 2 C -0.13 -1.00 5.51 -26.74 -0.15 -1.15 16 3 C 0.08 0.71 3.51 -26.00 -0.09 0.61 16 4 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 5 C -0.15 -1.09 6.55 -24.72 -0.16 -1.26 16 6 C -0.14 -1.38 6.57 -24.42 -0.16 -1.54 16 7 C 0.09 1.18 3.97 -26.85 -0.11 1.07 16 8 H 0.11 1.16 8.14 -51.93 -0.42 0.73 16 9 C 0.46 7.64 7.30 36.01 0.26 7.91 16 10 O -0.49 -9.70 16.20 -25.33 -0.41 -10.11 16 11 O -0.34 -6.10 9.76 -45.89 -0.45 -6.54 16 12 C 0.07 1.44 4.87 36.01 0.18 1.61 16 13 C 0.50 11.29 7.65 -10.98 -0.08 11.21 16 14 O -0.54 -12.48 12.92 -14.05 -0.18 -12.66 16 15 N -0.40 -9.56 2.30 -58.97 -0.14 -9.69 16 16 C -0.38 -9.56 8.01 -14.93 -0.12 -9.68 16 17 H 0.11 2.92 7.70 -52.49 -0.40 2.51 16 18 C 0.08 2.17 4.61 -17.48 -0.08 2.09 16 19 N -0.85 -22.58 13.96 55.49 0.77 -21.80 16 20 Si 0.87 20.52 23.84 -169.99 -4.05 16.46 16 21 H -0.25 -5.69 6.14 56.52 0.35 -5.35 16 22 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.26 -6.31 6.48 56.52 0.37 -5.95 16 24 C 0.16 3.68 4.13 -83.69 -0.35 3.33 16 25 C -0.16 -3.48 5.60 -39.37 -0.22 -3.70 16 26 C -0.10 -1.99 9.76 -39.61 -0.39 -2.38 16 27 C -0.17 -2.97 10.04 -39.53 -0.40 -3.37 16 28 C -0.11 -2.00 10.04 -39.61 -0.40 -2.40 16 29 C -0.18 -3.96 9.04 -39.37 -0.36 -4.31 16 30 O -0.35 -4.58 9.88 -54.62 -0.54 -5.12 16 31 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.65 7.88 -51.93 -0.41 0.24 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.08 0.50 7.85 -51.93 -0.41 0.09 16 38 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 39 H 0.09 0.90 8.05 -51.93 -0.42 0.48 16 40 H 0.11 2.12 8.14 -51.93 -0.42 1.70 16 41 H 0.10 2.04 7.57 -51.93 -0.39 1.64 16 42 H 0.28 6.99 8.31 -40.82 -0.34 6.65 16 43 H 0.14 3.22 5.68 -52.49 -0.30 2.92 16 44 H 0.11 1.87 8.06 -52.49 -0.42 1.44 16 45 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 46 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 47 H 0.18 3.97 4.57 -56.05 -0.26 3.71 16 LS Contribution 380.64 15.07 5.74 5.74 Total: -1.00 -30.34 380.64 -8.39 -38.73 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: -6.89 Total: 7.85 kcal Atomic # 6 Polarization: -0.59 SS G_CDS: -2.25 Total: -2.85 kcal Atomic # 7 Polarization: -32.13 SS G_CDS: 0.64 Total: -31.50 kcal Atomic # 8 Polarization: -32.86 SS G_CDS: -1.58 Total: -34.44 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -4.05 Total: 16.46 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -30.34 -8.39 -38.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000757120186.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.190 kcal (2) G-P(sol) polarization free energy of solvation -30.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds