Wall clock time and date at job start Wed Apr 1 2020 04:15:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.47342 * 2 1 4 4 H 1.09007 * 109.82232 * 305.88887 * 3 2 1 5 5 C 1.54380 * 109.83005 * 184.99854 * 3 2 1 6 6 C 1.55308 * 102.25220 * 219.12698 * 5 3 2 7 7 C 1.54950 * 100.94033 * 34.13761 * 6 5 3 8 8 H 1.08996 * 110.31043 * 82.56232 * 7 6 5 9 9 C 1.50699 * 110.30789 * 204.63913 * 7 6 5 10 10 O 1.20828 * 120.00167 * 115.00030 * 9 7 6 11 11 O 1.34227 * 119.99896 * 294.71990 * 9 7 6 12 12 C 1.45197 * 116.99853 * 180.27788 * 11 9 7 13 13 C 1.50704 * 109.47127 * 180.02562 * 12 11 9 14 14 O 1.21290 * 119.99912 * 0.02562 * 13 12 11 15 15 N 1.34768 * 120.00432 * 179.97438 * 13 12 11 16 16 C 1.39236 * 120.00412 * 175.70794 * 15 13 12 17 17 C 1.39485 * 119.83612 * 215.01683 * 16 15 13 18 18 C 1.36376 * 120.16844 * 179.76220 * 17 16 15 19 19 C 1.40863 * 119.82660 * 0.50491 * 18 17 16 20 20 C 1.41155 * 120.16029 * 179.72045 * 19 18 17 21 21 H 1.08006 * 119.99753 * 214.80935 * 20 19 18 22 22 C 1.39906 * 119.99936 * 34.80815 * 20 19 18 23 23 N 1.30870 * 120.00161 * 355.55922 * 22 20 19 24 24 Si 1.86805 * 119.99709 * 175.55751 * 22 20 19 25 25 H 1.48498 * 109.47193 * 90.00142 * 24 22 20 26 26 H 1.48499 * 109.47011 * 210.00087 * 24 22 20 27 27 H 1.48497 * 109.47262 * 330.00111 * 24 22 20 28 28 C 1.40874 * 119.67688 * 359.75042 * 19 18 17 29 29 C 1.36370 * 119.82290 * 359.97438 * 28 19 18 30 30 O 1.43241 * 109.82742 * 66.86544 * 3 2 1 31 31 H 1.09003 * 109.47408 * 300.00195 * 1 2 3 32 32 H 1.09003 * 109.46996 * 59.99502 * 1 2 3 33 33 H 1.08990 * 109.47440 * 179.97438 * 1 2 3 34 34 H 1.09004 * 109.47072 * 240.00506 * 2 1 3 35 35 H 1.08997 * 109.47461 * 119.99968 * 2 1 3 36 36 H 1.09008 * 110.84348 * 100.94348 * 5 3 2 37 37 H 1.08994 * 111.02411 * 337.40125 * 5 3 2 38 38 H 1.08997 * 111.12470 * 276.21628 * 6 5 3 39 39 H 1.08993 * 111.15768 * 152.06478 * 6 5 3 40 40 H 1.08999 * 109.47064 * 299.99639 * 12 11 9 41 41 H 1.08995 * 109.47113 * 60.00524 * 12 11 9 42 42 H 0.97002 * 119.99837 * 355.71104 * 15 13 12 43 43 H 1.07997 * 119.91126 * 0.02562 * 17 16 15 44 44 H 1.08004 * 120.07900 * 180.25532 * 18 17 16 45 45 H 0.97001 * 119.99588 * 179.97438 * 23 22 20 46 46 H 1.07989 * 120.08742 * 180.02562 * 28 19 18 47 47 H 1.08001 * 119.91682 * 179.97438 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5965 1.9915 -0.8308 5 6 3.5786 1.4540 -0.1265 6 6 3.9799 2.6055 0.8353 7 6 2.8994 2.4589 1.9363 8 1 3.1872 1.6855 2.6483 9 6 2.6946 3.7723 2.6462 10 8 1.6347 4.3462 2.5613 11 8 3.6878 4.3019 3.3776 12 6 3.4178 5.5662 4.0386 13 6 4.6391 6.0027 4.8061 14 8 5.6389 5.3161 4.7964 15 7 4.6208 7.1565 5.5022 16 6 5.7161 7.5160 6.2830 17 6 5.5184 8.1952 7.4852 18 6 6.5861 8.5463 8.2576 19 6 7.8917 8.2307 7.8334 20 6 9.0022 8.5960 8.6244 21 1 9.9287 8.8884 8.1525 22 6 8.9028 8.5793 10.0199 23 7 7.7566 8.3096 10.5911 24 14 10.4062 8.9420 11.0677 25 1 10.4807 10.4001 11.3386 26 1 10.3037 8.2044 12.3525 27 1 11.6293 8.5096 10.3450 28 6 8.0838 7.5493 6.6154 29 6 7.0060 7.1998 5.8565 30 8 1.7029 2.0771 1.2391 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0275 -0.0005 34 1 1.8933 -0.5138 -0.8901 35 1 1.8934 -0.5138 0.8899 36 1 3.8820 1.6792 -1.1490 37 1 4.0051 0.5067 0.2031 38 1 3.9076 3.5739 0.3404 39 1 4.9788 2.4483 1.2420 40 1 3.1693 6.3206 3.2922 41 1 2.5804 5.4453 4.7258 42 1 3.8445 7.7365 5.4594 43 1 4.5170 8.4398 7.8071 44 1 6.4311 9.0685 9.1902 45 1 7.6879 8.2977 11.5586 46 1 9.0818 7.3037 6.2840 47 1 7.1515 6.6778 4.9223 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000757135360.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:15:52 Heat of formation + Delta-G solvation = -146.366689 kcal Electronic energy + Delta-G solvation = -29068.797681 eV Core-core repulsion = 24795.478120 eV Total energy + Delta-G solvation = -4273.319562 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.09260 -39.95349 -39.32095 -37.35899 -36.43377 -34.50167 -34.03296 -33.01535 -32.68733 -30.20656 -29.62084 -29.20138 -27.97349 -25.16453 -24.56131 -22.42840 -22.00252 -21.60767 -20.90523 -20.65294 -19.82022 -18.41484 -17.62917 -17.33629 -17.10645 -16.78376 -16.45026 -16.04439 -15.76700 -15.19185 -14.81375 -14.69304 -14.33658 -13.96506 -13.94102 -13.59172 -13.40507 -13.34458 -13.00081 -12.76439 -12.67415 -12.33210 -12.27341 -12.16064 -11.91688 -11.75100 -11.43395 -11.41680 -11.32590 -11.19473 -11.15837 -11.07808 -10.90198 -10.75760 -10.68323 -10.08040 -9.97824 -9.54487 -9.50414 -9.19000 -8.94568 -7.59361 -6.92892 -6.65467 -4.38315 1.87507 1.95144 2.44613 2.94021 3.05047 3.08238 3.11826 3.23034 3.36259 3.64308 3.94973 3.95787 4.19096 4.33094 4.54315 4.57730 4.65659 4.70233 4.75699 4.84833 4.93757 4.94800 5.00095 5.01806 5.27647 5.31658 5.42087 5.44648 5.55568 5.58960 5.60982 5.80981 5.94611 6.07821 6.15261 6.38917 6.44979 6.66822 6.85042 7.02059 7.14339 7.24618 7.48755 7.59320 7.67142 7.80390 8.01883 8.16645 8.27025 8.54666 8.63683 8.88973 8.94844 10.25523 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.029725 B = 0.001616 C = 0.001583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.736699 B =17325.435026 C =17688.217664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.133 4.133 3 C 0.077 3.923 4 H 0.085 0.915 5 C -0.151 4.151 6 C -0.143 4.143 7 C 0.094 3.906 8 H 0.114 0.886 9 C 0.460 3.540 10 O -0.490 6.490 11 O -0.326 6.326 12 C 0.052 3.948 13 C 0.499 3.501 14 O -0.509 6.509 15 N -0.645 5.645 16 C 0.000 4.000 17 C -0.118 4.118 18 C -0.141 4.141 19 C 0.101 3.899 20 C -0.460 4.460 21 H 0.076 0.924 22 C 0.069 3.931 23 N -0.810 5.810 24 Si 0.916 3.084 25 H -0.270 1.270 26 H -0.278 1.278 27 H -0.263 1.263 28 C -0.205 4.205 29 C -0.084 4.084 30 O -0.347 6.347 31 H 0.062 0.938 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.074 0.926 35 H 0.069 0.931 36 H 0.089 0.911 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.103 0.897 40 H 0.099 0.901 41 H 0.101 0.899 42 H 0.398 0.602 43 H 0.092 0.908 44 H 0.133 0.867 45 H 0.278 0.722 46 H 0.097 0.903 47 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.286 -11.533 -17.875 24.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.170 4.170 3 C 0.019 3.981 4 H 0.103 0.897 5 C -0.188 4.188 6 C -0.181 4.181 7 C 0.035 3.965 8 H 0.132 0.868 9 C 0.301 3.699 10 O -0.376 6.376 11 O -0.241 6.241 12 C -0.025 4.025 13 C 0.284 3.716 14 O -0.384 6.384 15 N -0.289 5.289 16 C -0.092 4.092 17 C -0.138 4.138 18 C -0.161 4.161 19 C 0.098 3.902 20 C -0.491 4.491 21 H 0.095 0.905 22 C -0.146 4.146 23 N -0.438 5.438 24 Si 0.741 3.259 25 H -0.195 1.195 26 H -0.203 1.203 27 H -0.187 1.187 28 C -0.226 4.226 29 C -0.104 4.104 30 O -0.267 6.267 31 H 0.081 0.919 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.093 0.907 35 H 0.088 0.912 36 H 0.107 0.893 37 H 0.104 0.896 38 H 0.104 0.896 39 H 0.122 0.878 40 H 0.117 0.883 41 H 0.119 0.881 42 H 0.232 0.768 43 H 0.110 0.890 44 H 0.150 0.850 45 H 0.089 0.911 46 H 0.115 0.885 47 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -11.208 -11.849 -17.585 23.984 hybrid contribution 0.155 0.440 0.593 0.755 sum -11.053 -11.410 -16.991 23.260 Atomic orbital electron populations 1.21722 0.95116 1.01523 1.02486 1.21916 0.97200 0.95252 1.02668 1.22944 0.94585 0.93835 0.86687 0.89691 1.23223 0.94912 0.99458 1.01209 1.23242 0.99498 1.00327 0.95027 1.22318 0.86875 0.91609 0.95705 0.86821 1.23544 0.82018 0.87177 0.77136 1.90690 1.26811 1.61151 1.58947 1.86527 1.41758 1.36699 1.59133 1.22757 0.97887 0.84502 0.97394 1.19906 0.88775 0.81755 0.81169 1.90736 1.33050 1.53475 1.61099 1.42776 1.19334 1.20358 1.46469 1.17224 0.85536 1.11986 0.94461 1.20315 0.98144 1.02215 0.93110 1.21196 0.91675 1.03019 1.00255 1.17747 0.93245 0.88414 0.90754 1.19518 0.98620 1.40145 0.90771 0.90536 1.25891 0.97268 0.92688 0.98729 1.69757 1.24935 1.37189 1.11873 0.86184 0.81718 0.79047 0.78963 1.19498 1.20278 1.18697 1.20805 0.96733 1.05848 0.99165 1.20401 0.91098 0.99676 0.99211 1.88548 1.27040 1.77881 1.33190 0.91853 0.92832 0.92807 0.90748 0.91221 0.89259 0.89590 0.89646 0.87801 0.88317 0.88124 0.76824 0.88952 0.84955 0.91076 0.88491 0.87425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.83 37.16 0.37 -0.64 16 2 C -0.13 -0.80 5.51 -26.73 -0.15 -0.94 16 3 C 0.08 0.55 3.51 -26.00 -0.09 0.46 16 4 H 0.09 0.59 8.14 -51.92 -0.42 0.16 16 5 C -0.15 -0.83 6.54 -24.78 -0.16 -0.99 16 6 C -0.14 -1.07 6.56 -24.48 -0.16 -1.23 16 7 C 0.09 0.92 3.97 -26.85 -0.11 0.82 16 8 H 0.11 0.94 8.14 -51.93 -0.42 0.51 16 9 C 0.46 5.91 7.30 36.01 0.26 6.17 16 10 O -0.49 -7.48 16.30 -25.32 -0.41 -7.89 16 11 O -0.33 -4.52 9.75 -45.90 -0.45 -4.97 16 12 C 0.05 0.67 5.95 36.01 0.21 0.89 16 13 C 0.50 8.50 7.74 -10.99 -0.09 8.42 16 14 O -0.51 -10.86 13.92 -14.11 -0.20 -11.06 16 15 N -0.64 -10.86 5.30 -9.74 -0.05 -10.91 16 16 C 0.00 -0.01 6.31 -83.57 -0.53 -0.53 16 17 C -0.12 -2.62 9.90 -39.79 -0.39 -3.02 16 18 C -0.14 -3.58 8.61 -39.26 -0.34 -3.91 16 19 C 0.10 2.67 5.55 -106.80 -0.59 2.08 16 20 C -0.46 -12.13 9.02 -37.85 -0.34 -12.47 16 21 H 0.08 1.93 7.85 -52.48 -0.41 1.52 16 22 C 0.07 1.74 5.42 -17.34 -0.09 1.64 16 23 N -0.81 -20.86 10.60 55.55 0.59 -20.27 16 24 Si 0.92 18.80 29.56 -169.99 -5.03 13.77 16 25 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 26 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 27 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 28 C -0.21 -5.13 9.74 -39.26 -0.38 -5.51 16 29 C -0.08 -1.98 8.61 -39.79 -0.34 -2.32 16 30 O -0.35 -3.70 9.90 -54.63 -0.54 -4.25 16 31 H 0.06 0.53 7.90 -51.93 -0.41 0.12 16 32 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 35 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.09 0.37 8.14 -51.92 -0.42 -0.06 16 37 H 0.09 0.38 7.86 -51.93 -0.41 -0.02 16 38 H 0.08 0.67 8.05 -51.93 -0.42 0.25 16 39 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.10 1.05 8.13 -51.93 -0.42 0.63 16 41 H 0.10 1.13 8.13 -51.93 -0.42 0.71 16 42 H 0.40 5.06 8.82 -40.82 -0.36 4.70 16 43 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 44 H 0.13 3.46 6.13 -52.48 -0.32 3.14 16 45 H 0.28 6.56 8.30 -40.82 -0.34 6.22 16 46 H 0.10 2.30 8.06 -52.49 -0.42 1.87 16 47 H 0.11 2.49 6.22 -52.49 -0.33 2.17 16 LS Contribution 395.36 15.07 5.96 5.96 Total: -1.00 -32.71 395.36 -9.91 -42.62 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: -6.86 Total: 8.08 kcal Atomic # 6 Polarization: -8.16 SS G_CDS: -2.92 Total: -11.08 kcal Atomic # 7 Polarization: -31.72 SS G_CDS: 0.54 Total: -31.18 kcal Atomic # 8 Polarization: -26.56 SS G_CDS: -1.60 Total: -28.16 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -5.03 Total: 13.77 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -32.71 -9.91 -42.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000757135360.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.747 kcal (2) G-P(sol) polarization free energy of solvation -32.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds