Wall clock time and date at job start Wed Apr 1 2020 04:15:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.47342 * 2 1 4 4 H 1.09007 * 109.82232 * 305.88887 * 3 2 1 5 5 C 1.54380 * 109.83005 * 184.99854 * 3 2 1 6 6 C 1.55308 * 102.25220 * 219.12698 * 5 3 2 7 7 C 1.54950 * 100.94033 * 34.13761 * 6 5 3 8 8 H 1.08996 * 110.31043 * 82.56232 * 7 6 5 9 9 C 1.50699 * 110.30789 * 204.63913 * 7 6 5 10 10 O 1.20828 * 120.00167 * 115.00030 * 9 7 6 11 11 O 1.34227 * 119.99896 * 294.71990 * 9 7 6 12 12 C 1.45197 * 116.99853 * 180.27788 * 11 9 7 13 13 C 1.50704 * 109.47127 * 180.02562 * 12 11 9 14 14 O 1.21290 * 119.99912 * 0.02562 * 13 12 11 15 15 N 1.34768 * 120.00432 * 179.97438 * 13 12 11 16 16 C 1.39236 * 120.00412 * 175.70794 * 15 13 12 17 17 C 1.39485 * 119.83612 * 215.01683 * 16 15 13 18 18 C 1.36376 * 120.16844 * 179.76220 * 17 16 15 19 19 C 1.40863 * 119.82660 * 0.50491 * 18 17 16 20 20 C 1.41155 * 120.16029 * 179.72045 * 19 18 17 21 21 H 1.08006 * 119.99753 * 214.80935 * 20 19 18 22 22 C 1.39906 * 119.99936 * 34.80815 * 20 19 18 23 23 N 1.30870 * 120.00161 * 355.55922 * 22 20 19 24 24 Si 1.86805 * 119.99709 * 175.55751 * 22 20 19 25 25 H 1.48498 * 109.47193 * 90.00142 * 24 22 20 26 26 H 1.48499 * 109.47011 * 210.00087 * 24 22 20 27 27 H 1.48497 * 109.47262 * 330.00111 * 24 22 20 28 28 C 1.40874 * 119.67688 * 359.75042 * 19 18 17 29 29 C 1.36370 * 119.82290 * 359.97438 * 28 19 18 30 30 O 1.43241 * 109.82742 * 66.86544 * 3 2 1 31 31 H 1.09003 * 109.47408 * 300.00195 * 1 2 3 32 32 H 1.09003 * 109.46996 * 59.99502 * 1 2 3 33 33 H 1.08990 * 109.47440 * 179.97438 * 1 2 3 34 34 H 1.09004 * 109.47072 * 240.00506 * 2 1 3 35 35 H 1.08997 * 109.47461 * 119.99968 * 2 1 3 36 36 H 1.09008 * 110.84348 * 100.94348 * 5 3 2 37 37 H 1.08994 * 111.02411 * 337.40125 * 5 3 2 38 38 H 1.08997 * 111.12470 * 276.21628 * 6 5 3 39 39 H 1.08993 * 111.15768 * 152.06478 * 6 5 3 40 40 H 1.08999 * 109.47064 * 299.99639 * 12 11 9 41 41 H 1.08995 * 109.47113 * 60.00524 * 12 11 9 42 42 H 0.97002 * 119.99837 * 355.71104 * 15 13 12 43 43 H 1.07997 * 119.91126 * 0.02562 * 17 16 15 44 44 H 1.08004 * 120.07900 * 180.25532 * 18 17 16 45 45 H 0.97001 * 119.99588 * 179.97438 * 23 22 20 46 46 H 1.07989 * 120.08742 * 180.02562 * 28 19 18 47 47 H 1.08001 * 119.91682 * 179.97438 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5965 1.9915 -0.8308 5 6 3.5786 1.4540 -0.1265 6 6 3.9799 2.6055 0.8353 7 6 2.8994 2.4589 1.9363 8 1 3.1872 1.6855 2.6483 9 6 2.6946 3.7723 2.6462 10 8 1.6347 4.3462 2.5613 11 8 3.6878 4.3019 3.3776 12 6 3.4178 5.5662 4.0386 13 6 4.6391 6.0027 4.8061 14 8 5.6389 5.3161 4.7964 15 7 4.6208 7.1565 5.5022 16 6 5.7161 7.5160 6.2830 17 6 5.5184 8.1952 7.4852 18 6 6.5861 8.5463 8.2576 19 6 7.8917 8.2307 7.8334 20 6 9.0022 8.5960 8.6244 21 1 9.9287 8.8884 8.1525 22 6 8.9028 8.5793 10.0199 23 7 7.7566 8.3096 10.5911 24 14 10.4062 8.9420 11.0677 25 1 10.4807 10.4001 11.3386 26 1 10.3037 8.2044 12.3525 27 1 11.6293 8.5096 10.3450 28 6 8.0838 7.5493 6.6154 29 6 7.0060 7.1998 5.8565 30 8 1.7029 2.0771 1.2391 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0275 -0.0005 34 1 1.8933 -0.5138 -0.8901 35 1 1.8934 -0.5138 0.8899 36 1 3.8820 1.6792 -1.1490 37 1 4.0051 0.5067 0.2031 38 1 3.9076 3.5739 0.3404 39 1 4.9788 2.4483 1.2420 40 1 3.1693 6.3206 3.2922 41 1 2.5804 5.4453 4.7258 42 1 3.8445 7.7365 5.4594 43 1 4.5170 8.4398 7.8071 44 1 6.4311 9.0685 9.1902 45 1 7.6879 8.2977 11.5586 46 1 9.0818 7.3037 6.2840 47 1 7.1515 6.6778 4.9223 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000757135360.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:15:51 Heat of formation + Delta-G solvation = -164.194818 kcal Electronic energy + Delta-G solvation = -29069.570767 eV Core-core repulsion = 24795.478120 eV Total energy + Delta-G solvation = -4274.092647 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.06323 -41.21548 -40.31413 -39.06794 -37.56857 -36.19160 -34.78074 -34.58234 -33.30525 -31.62254 -31.35614 -30.38051 -29.19873 -26.66332 -25.52259 -23.54788 -22.99326 -22.75059 -22.39981 -21.44145 -21.34991 -19.34771 -19.24338 -18.86124 -18.08612 -17.75225 -17.70239 -17.25450 -16.97666 -16.61304 -16.11093 -15.68397 -15.50816 -15.15730 -15.01699 -14.70571 -14.48072 -14.22087 -14.08447 -14.04042 -13.92635 -13.83362 -13.59710 -13.25685 -13.10145 -12.87511 -12.87334 -12.78733 -12.48459 -12.44429 -11.99655 -11.97839 -11.82988 -11.80223 -11.66883 -11.51344 -11.40872 -11.23965 -10.88089 -10.67636 -10.62583 -9.47966 -8.77109 -8.51456 -6.34384 0.72660 0.91151 0.98548 1.13004 1.40217 1.41175 1.53290 1.66364 2.22671 2.25988 2.79076 2.82987 3.33483 3.48416 3.56321 3.68451 3.71893 3.92091 3.95024 3.99026 4.03848 4.18509 4.27463 4.39049 4.45313 4.50165 4.51486 4.77703 4.85537 4.91815 4.94702 4.96163 5.05913 5.08575 5.11583 5.12777 5.13724 5.30900 5.31719 5.40587 5.43036 5.68619 5.84056 5.87577 5.99087 6.11784 6.37430 6.48796 6.61254 6.67329 6.95941 6.97557 7.24212 8.41203 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.029725 B = 0.001616 C = 0.001583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.736699 B =17325.435026 C =17688.217664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.130 4.130 3 C 0.068 3.932 4 H 0.085 0.915 5 C -0.140 4.140 6 C -0.142 4.142 7 C 0.090 3.910 8 H 0.130 0.870 9 C 0.463 3.537 10 O -0.518 6.518 11 O -0.339 6.339 12 C 0.058 3.942 13 C 0.503 3.497 14 O -0.554 6.554 15 N -0.635 5.635 16 C 0.017 3.983 17 C -0.115 4.115 18 C -0.159 4.159 19 C 0.068 3.932 20 C -0.497 4.497 21 H 0.073 0.927 22 C 0.028 3.972 23 N -0.840 5.840 24 Si 0.988 3.012 25 H -0.259 1.259 26 H -0.270 1.270 27 H -0.263 1.263 28 C -0.220 4.220 29 C -0.095 4.095 30 O -0.373 6.373 31 H 0.040 0.960 32 H 0.055 0.945 33 H 0.062 0.938 34 H 0.096 0.904 35 H 0.068 0.932 36 H 0.107 0.893 37 H 0.100 0.900 38 H 0.079 0.921 39 H 0.111 0.889 40 H 0.127 0.873 41 H 0.123 0.877 42 H 0.422 0.578 43 H 0.127 0.873 44 H 0.119 0.881 45 H 0.285 0.715 46 H 0.097 0.903 47 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.024 -12.388 -18.935 25.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.167 4.167 3 C 0.012 3.988 4 H 0.103 0.897 5 C -0.177 4.177 6 C -0.179 4.179 7 C 0.032 3.968 8 H 0.147 0.853 9 C 0.306 3.694 10 O -0.406 6.406 11 O -0.255 6.255 12 C -0.018 4.018 13 C 0.290 3.710 14 O -0.431 6.431 15 N -0.282 5.282 16 C -0.076 4.076 17 C -0.135 4.135 18 C -0.180 4.180 19 C 0.066 3.934 20 C -0.528 4.528 21 H 0.091 0.909 22 C -0.184 4.184 23 N -0.468 5.468 24 Si 0.809 3.191 25 H -0.184 1.184 26 H -0.194 1.194 27 H -0.187 1.187 28 C -0.240 4.240 29 C -0.115 4.115 30 O -0.293 6.293 31 H 0.059 0.941 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.115 0.885 35 H 0.087 0.913 36 H 0.126 0.874 37 H 0.119 0.881 38 H 0.098 0.902 39 H 0.129 0.871 40 H 0.145 0.855 41 H 0.141 0.859 42 H 0.260 0.740 43 H 0.145 0.855 44 H 0.137 0.863 45 H 0.096 0.904 46 H 0.115 0.885 47 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -11.993 -12.693 -18.674 25.567 hybrid contribution 0.232 0.649 0.785 1.045 sum -11.761 -12.044 -17.889 24.564 Atomic orbital electron populations 1.21725 0.95901 1.01833 1.01484 1.21923 0.96493 0.94627 1.03652 1.23163 0.96006 0.94256 0.85425 0.89696 1.23228 0.93386 0.99308 1.01767 1.23271 0.99026 1.00961 0.94674 1.22536 0.87519 0.90236 0.96542 0.85306 1.24172 0.81196 0.87693 0.76336 1.90671 1.27781 1.62150 1.60026 1.86525 1.42482 1.37047 1.59408 1.22738 0.95701 0.85184 0.98199 1.20569 0.89357 0.80877 0.80237 1.90725 1.35160 1.54744 1.62515 1.42642 1.18852 1.21087 1.45618 1.17264 0.86339 1.09726 0.94296 1.20569 0.99004 1.01280 0.92650 1.21178 0.92268 1.03993 1.00512 1.18063 0.94142 0.89608 0.91607 1.19746 0.98785 1.42218 0.92027 0.90856 1.26733 1.00325 0.91963 0.99357 1.69819 1.26709 1.37754 1.12508 0.85107 0.77637 0.79290 0.77066 1.18406 1.19445 1.18664 1.20928 0.97443 1.06328 0.99328 1.20531 0.91794 0.99910 0.99293 1.88530 1.27937 1.78296 1.34561 0.94107 0.92559 0.91854 0.88533 0.91345 0.87438 0.88100 0.90245 0.87073 0.85479 0.85892 0.74010 0.85505 0.86281 0.90437 0.88487 0.87223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 9.83 71.98 0.71 -1.16 16 2 C -0.13 -1.30 5.51 30.60 0.17 -1.13 16 3 C 0.07 0.87 3.51 31.07 0.11 0.98 16 4 H 0.09 1.05 8.14 -2.38 -0.02 1.03 16 5 C -0.14 -1.17 6.54 31.86 0.21 -0.96 16 6 C -0.14 -1.86 6.56 32.05 0.21 -1.65 16 7 C 0.09 1.66 3.97 30.51 0.12 1.78 16 8 H 0.13 1.93 8.14 -2.39 -0.02 1.91 16 9 C 0.46 11.33 7.30 71.24 0.52 11.85 16 10 O -0.52 -15.27 16.30 28.24 0.46 -14.81 16 11 O -0.34 -8.88 9.75 -45.04 -0.44 -9.32 16 12 C 0.06 1.37 5.95 71.24 0.42 1.79 16 13 C 0.50 16.21 7.74 87.66 0.68 16.89 16 14 O -0.55 -23.27 13.92 15.74 0.22 -23.05 16 15 N -0.64 -19.97 5.30 -303.11 -1.61 -21.58 16 16 C 0.02 0.72 6.31 38.57 0.24 0.96 16 17 C -0.12 -5.02 9.90 22.14 0.22 -4.80 16 18 C -0.16 -8.20 8.61 22.48 0.19 -8.01 16 19 C 0.07 3.73 5.55 -21.28 -0.12 3.61 16 20 C -0.50 -27.14 9.02 23.39 0.21 -26.93 16 21 H 0.07 3.87 7.85 -2.91 -0.02 3.84 16 22 C 0.03 1.44 5.42 85.24 0.46 1.90 16 23 N -0.84 -44.04 10.60 21.82 0.23 -43.81 16 24 Si 0.99 38.86 29.56 68.60 2.03 40.89 16 25 H -0.26 -9.70 7.11 99.48 0.71 -8.99 16 26 H -0.27 -10.17 7.11 99.48 0.71 -9.46 16 27 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 28 C -0.22 -11.35 9.74 22.48 0.22 -11.13 16 29 C -0.10 -4.52 8.61 22.13 0.19 -4.33 16 30 O -0.37 -7.63 9.90 -130.43 -1.29 -8.92 16 31 H 0.04 0.67 7.90 -2.39 -0.02 0.66 16 32 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.10 0.56 8.14 -2.38 -0.02 0.54 16 35 H 0.07 0.71 8.14 -2.39 -0.02 0.70 16 36 H 0.11 0.54 8.14 -2.38 -0.02 0.52 16 37 H 0.10 0.57 7.86 -2.39 -0.02 0.56 16 38 H 0.08 1.13 8.05 -2.39 -0.02 1.11 16 39 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.13 2.31 8.13 -2.39 -0.02 2.29 16 41 H 0.12 2.40 8.13 -2.39 -0.02 2.38 16 42 H 0.42 9.33 8.82 -92.71 -0.82 8.52 16 43 H 0.13 4.58 8.06 -2.91 -0.02 4.56 16 44 H 0.12 6.39 6.13 -2.91 -0.02 6.38 16 45 H 0.28 13.57 8.30 -92.71 -0.77 12.80 16 46 H 0.10 4.81 8.06 -2.92 -0.02 4.78 16 47 H 0.11 5.12 6.22 -2.91 -0.02 5.10 16 Total: -1.00 -73.25 395.36 4.55 -68.70 By element: Atomic # 1 Polarization: 32.06 SS G_CDS: 0.18 Total: 32.23 kcal Atomic # 6 Polarization: -25.10 SS G_CDS: 4.77 Total: -20.33 kcal Atomic # 7 Polarization: -64.01 SS G_CDS: -1.38 Total: -65.39 kcal Atomic # 8 Polarization: -55.05 SS G_CDS: -1.05 Total: -56.10 kcal Atomic # 14 Polarization: 38.86 SS G_CDS: 2.03 Total: 40.89 kcal Total: -73.25 4.55 -68.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000757135360.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.493 kcal (2) G-P(sol) polarization free energy of solvation -73.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds