Wall clock time and date at job start Wed Apr 1 2020 04:15:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53004 * 109.47121 * 2 1 4 4 H 1.08998 * 110.55445 * 307.88274 * 3 2 1 5 5 C 1.54990 * 110.62172 * 184.99795 * 3 2 1 6 6 C 1.54808 * 102.09428 * 204.32011 * 5 3 2 7 7 C 1.54094 * 104.18919 * 20.88155 * 6 5 3 8 8 H 1.08994 * 109.88406 * 242.45855 * 7 6 5 9 9 C 1.50705 * 109.87895 * 121.45198 * 7 6 5 10 10 O 1.20824 * 120.00163 * 244.99884 * 9 7 6 11 11 O 1.34229 * 119.99696 * 65.00342 * 9 7 6 12 12 C 1.45197 * 116.99901 * 179.97438 * 11 9 7 13 13 C 1.50699 * 109.47210 * 179.97438 * 12 11 9 14 14 O 1.21280 * 119.99848 * 0.02562 * 13 12 11 15 15 N 1.34783 * 120.00025 * 180.27563 * 13 12 11 16 16 C 1.39231 * 119.99892 * 176.42825 * 15 13 12 17 17 C 1.39478 * 119.83157 * 217.48529 * 16 15 13 18 18 C 1.36377 * 120.16866 * 179.71840 * 17 16 15 19 19 C 1.40871 * 119.83041 * 0.53160 * 18 17 16 20 20 C 1.41150 * 120.16989 * 179.71933 * 19 18 17 21 21 H 1.07998 * 119.99942 * 157.96712 * 20 19 18 22 22 C 1.39910 * 119.99676 * 337.96973 * 20 19 18 23 23 N 1.30875 * 119.99936 * 327.62266 * 22 20 19 24 24 Si 1.86799 * 119.99796 * 147.62490 * 22 20 19 25 25 H 1.48506 * 109.47000 * 94.98463 * 24 22 20 26 26 H 1.48501 * 109.47028 * 214.98462 * 24 22 20 27 27 H 1.48501 * 109.47242 * 334.98613 * 24 22 20 28 28 C 1.40872 * 119.66595 * 359.74385 * 19 18 17 29 29 C 1.36371 * 119.83028 * 359.97438 * 28 19 18 30 30 O 1.43749 * 107.29219 * 2.02942 * 7 6 5 31 31 H 1.08997 * 109.47431 * 59.99933 * 1 2 3 32 32 H 1.09003 * 109.46743 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.47431 * 299.99610 * 1 2 3 34 34 H 1.09005 * 109.47431 * 240.00390 * 2 1 3 35 35 H 1.09004 * 109.47741 * 120.00282 * 2 1 3 36 36 H 1.08998 * 110.90719 * 86.12231 * 5 3 2 37 37 H 1.09003 * 110.94322 * 322.53450 * 5 3 2 38 38 H 1.09000 * 110.48979 * 262.20236 * 6 5 3 39 39 H 1.09004 * 110.60397 * 139.61793 * 6 5 3 40 40 H 1.09003 * 109.47192 * 60.00073 * 12 11 9 41 41 H 1.09002 * 109.47538 * 300.00036 * 12 11 9 42 42 H 0.96996 * 119.99926 * 356.42441 * 15 13 12 43 43 H 1.07998 * 119.91815 * 359.97438 * 17 16 15 44 44 H 1.08004 * 120.08660 * 180.29515 * 18 17 16 45 45 H 0.96991 * 119.99650 * 179.97438 * 23 22 20 46 46 H 1.08005 * 120.08187 * 179.97438 * 28 19 18 47 47 H 1.08004 * 119.91392 * 180.02562 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5766 2.0122 -0.8055 5 6 3.5843 1.4755 -0.1264 6 6 3.9328 2.8428 0.5105 7 6 2.7067 3.1770 1.3820 8 1 2.2325 4.0893 1.0205 9 6 3.1311 3.3542 2.8172 10 8 2.7408 2.5838 3.6622 11 8 3.9425 4.3681 3.1567 12 6 4.3097 4.4780 4.5572 13 6 5.2182 5.6653 4.7467 14 8 5.5254 6.3517 3.7952 15 7 5.6932 5.9615 5.9728 16 6 6.5911 7.0130 6.1361 17 6 7.6340 6.8983 7.0552 18 6 8.5208 7.9217 7.2166 19 6 8.3750 9.1012 6.4603 20 6 9.2853 10.1672 6.6260 21 1 9.4091 10.8985 5.8409 22 6 10.0272 10.2764 7.8071 23 7 9.5140 9.8738 8.9418 24 14 11.7501 10.9968 7.7646 25 1 11.6891 12.4451 8.0870 26 1 12.6017 10.3026 8.7637 27 1 12.3292 10.8154 6.4092 28 6 7.3157 9.2118 5.5383 29 6 6.4402 8.1777 5.3837 30 8 1.7928 2.0724 1.2754 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5139 0.8900 36 1 3.8897 1.4445 -1.1722 37 1 4.0386 0.6583 0.4340 38 1 4.0696 3.5997 -0.2618 39 1 4.8282 2.7618 1.1268 40 1 4.8278 3.5711 4.8692 41 1 3.4106 4.6082 5.1595 42 1 5.4094 5.4422 6.7413 43 1 7.7420 5.9952 7.6375 44 1 9.3307 7.8297 7.9252 45 1 10.0285 9.9491 9.7605 46 1 7.1973 10.1132 4.9552 47 1 5.6279 8.2608 4.6769 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000757135362.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:15:57 Heat of formation + Delta-G solvation = -148.898246 kcal Electronic energy + Delta-G solvation = -29049.417712 eV Core-core repulsion = 24775.988374 eV Total energy + Delta-G solvation = -4273.429338 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.09405 -39.87718 -39.23760 -37.33533 -36.41078 -34.51221 -34.11351 -33.13021 -32.64951 -30.21237 -29.60579 -29.25145 -28.00805 -25.14549 -24.54511 -22.46156 -21.83519 -21.46248 -21.14726 -20.76359 -19.84868 -18.09027 -17.62014 -17.39656 -17.25089 -16.69011 -16.47510 -16.06628 -15.72231 -15.23816 -14.78419 -14.61518 -14.21059 -14.10274 -14.03345 -13.76735 -13.45374 -13.37381 -12.98530 -12.69558 -12.68290 -12.21977 -12.19195 -12.12630 -12.03374 -11.93440 -11.50819 -11.46400 -11.26259 -11.18716 -11.08430 -10.98973 -10.91468 -10.69666 -10.57811 -10.21918 -10.10413 -9.80241 -9.51305 -9.12515 -8.76099 -7.59821 -7.21210 -6.93796 -4.32165 1.90743 1.96975 2.48801 2.89041 3.02578 3.05366 3.08688 3.25341 3.38275 3.68111 3.85891 4.00589 4.23244 4.36060 4.44822 4.46216 4.64529 4.72600 4.78518 4.87025 4.88871 4.99218 5.00708 5.07603 5.26233 5.34035 5.37987 5.52098 5.56014 5.59822 5.62782 5.72786 5.92423 6.09247 6.14752 6.35458 6.37209 6.69392 6.88808 6.95386 7.07949 7.22814 7.48193 7.52355 7.62723 7.82518 7.97256 8.18129 8.20983 8.49514 8.64386 8.79289 8.93582 9.97387 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.035111 B = 0.001592 C = 0.001563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.270636 B =17586.352872 C =17906.365344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.117 4.117 3 C 0.073 3.927 4 H 0.078 0.922 5 C -0.152 4.152 6 C -0.144 4.144 7 C 0.092 3.908 8 H 0.112 0.888 9 C 0.460 3.540 10 O -0.490 6.490 11 O -0.326 6.326 12 C 0.052 3.948 13 C 0.498 3.502 14 O -0.512 6.512 15 N -0.642 5.642 16 C -0.026 4.026 17 C -0.099 4.099 18 C -0.171 4.171 19 C 0.113 3.887 20 C -0.464 4.464 21 H 0.083 0.917 22 C 0.088 3.912 23 N -0.768 5.768 24 Si 0.897 3.103 25 H -0.269 1.269 26 H -0.274 1.274 27 H -0.257 1.257 28 C -0.224 4.224 29 C -0.064 4.064 30 O -0.344 6.344 31 H 0.053 0.947 32 H 0.055 0.945 33 H 0.062 0.938 34 H 0.078 0.922 35 H 0.073 0.927 36 H 0.088 0.912 37 H 0.081 0.919 38 H 0.096 0.904 39 H 0.087 0.913 40 H 0.099 0.901 41 H 0.099 0.901 42 H 0.396 0.604 43 H 0.090 0.910 44 H 0.108 0.892 45 H 0.284 0.716 46 H 0.095 0.905 47 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.821 -16.580 -13.184 24.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.155 4.155 3 C 0.016 3.984 4 H 0.096 0.904 5 C -0.190 4.190 6 C -0.182 4.182 7 C 0.032 3.968 8 H 0.130 0.870 9 C 0.301 3.699 10 O -0.376 6.376 11 O -0.242 6.242 12 C -0.025 4.025 13 C 0.283 3.717 14 O -0.387 6.387 15 N -0.287 5.287 16 C -0.118 4.118 17 C -0.119 4.119 18 C -0.191 4.191 19 C 0.111 3.889 20 C -0.491 4.491 21 H 0.101 0.899 22 C -0.134 4.134 23 N -0.390 5.390 24 Si 0.720 3.280 25 H -0.194 1.194 26 H -0.199 1.199 27 H -0.180 1.180 28 C -0.244 4.244 29 C -0.084 4.084 30 O -0.263 6.263 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.096 0.904 35 H 0.092 0.908 36 H 0.107 0.893 37 H 0.100 0.900 38 H 0.114 0.886 39 H 0.106 0.894 40 H 0.117 0.883 41 H 0.117 0.883 42 H 0.230 0.770 43 H 0.108 0.892 44 H 0.126 0.874 45 H 0.095 0.905 46 H 0.114 0.886 47 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -11.843 -16.402 -13.178 24.144 hybrid contribution 0.745 0.063 0.706 1.028 sum -11.098 -16.338 -12.472 23.359 Atomic orbital electron populations 1.21749 0.95070 1.01783 1.02368 1.21565 0.96925 0.93913 1.03051 1.23355 0.94440 0.94700 0.85870 0.90433 1.23238 0.95870 0.97491 1.02352 1.22904 0.97380 0.98334 0.99575 1.22112 0.92266 0.93467 0.88912 0.87042 1.23562 0.76065 0.78442 0.91870 1.90686 1.52266 1.43181 1.51445 1.86527 1.60797 1.48170 1.28691 1.22759 1.00139 0.99267 0.80369 1.19888 0.82229 0.85620 0.83965 1.90733 1.57633 1.50507 1.39806 1.42719 1.44919 1.33375 1.07660 1.16995 0.97138 0.89215 1.08418 1.20160 0.94536 0.98298 0.98887 1.20618 1.00751 0.93429 1.04311 1.17614 0.89721 0.92077 0.89531 1.19534 1.18772 1.09745 1.01063 0.89914 1.25957 0.99470 0.93452 0.94521 1.69942 1.36419 1.33551 0.99103 0.86496 0.82224 0.79507 0.79792 1.19409 1.19855 1.18050 1.20596 0.98583 0.98658 1.06558 1.20306 0.98751 0.91566 0.97746 1.88995 1.55677 1.44079 1.37541 0.92779 0.92599 0.91898 0.90351 0.90781 0.89348 0.90002 0.88586 0.89413 0.88275 0.88308 0.77002 0.89165 0.87421 0.90520 0.88643 0.87920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.86 37.15 0.37 -0.60 16 2 C -0.12 -0.74 5.70 -26.73 -0.15 -0.89 16 3 C 0.07 0.53 3.28 -25.68 -0.08 0.45 16 4 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 5 C -0.15 -0.96 6.58 -24.73 -0.16 -1.13 16 6 C -0.14 -1.12 6.63 -25.21 -0.17 -1.29 16 7 C 0.09 0.91 3.96 -27.31 -0.11 0.81 16 8 H 0.11 0.91 8.14 -51.93 -0.42 0.49 16 9 C 0.46 5.98 7.06 36.01 0.25 6.24 16 10 O -0.49 -7.55 16.27 -25.38 -0.41 -7.96 16 11 O -0.33 -4.59 9.75 -45.90 -0.45 -5.04 16 12 C 0.05 0.69 5.95 36.01 0.21 0.90 16 13 C 0.50 8.60 7.72 -10.98 -0.08 8.52 16 14 O -0.51 -11.01 14.12 -14.10 -0.20 -11.21 16 15 N -0.64 -11.05 5.30 -9.74 -0.05 -11.11 16 16 C -0.03 -0.57 6.25 -83.58 -0.52 -1.10 16 17 C -0.10 -2.21 9.90 -39.79 -0.39 -2.61 16 18 C -0.17 -4.31 8.74 -39.26 -0.34 -4.65 16 19 C 0.11 3.00 5.57 -106.80 -0.60 2.40 16 20 C -0.46 -12.09 8.94 -37.85 -0.34 -12.43 16 21 H 0.08 2.09 8.02 -52.49 -0.42 1.67 16 22 C 0.09 2.14 4.77 -17.33 -0.08 2.06 16 23 N -0.77 -19.07 11.78 55.55 0.65 -18.42 16 24 Si 0.90 17.92 29.66 -169.99 -5.04 12.88 16 25 H -0.27 -5.28 7.11 56.52 0.40 -4.87 16 26 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 27 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 28 C -0.22 -5.65 9.74 -39.26 -0.38 -6.03 16 29 C -0.06 -1.53 8.59 -39.79 -0.34 -1.87 16 30 O -0.34 -3.70 10.31 -54.85 -0.57 -4.27 16 31 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.06 0.50 8.06 -51.93 -0.42 0.08 16 34 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.08 0.55 8.06 -51.93 -0.42 0.13 16 38 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.09 0.77 7.69 -51.93 -0.40 0.37 16 40 H 0.10 1.12 8.13 -51.93 -0.42 0.69 16 41 H 0.10 1.11 8.13 -51.93 -0.42 0.69 16 42 H 0.40 5.25 8.82 -40.82 -0.36 4.89 16 43 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 44 H 0.11 2.74 6.53 -52.48 -0.34 2.40 16 45 H 0.28 6.33 8.30 -40.82 -0.34 5.99 16 46 H 0.10 2.29 8.06 -52.48 -0.42 1.87 16 47 H 0.10 2.42 6.44 -52.48 -0.34 2.08 16 LS Contribution 397.19 15.07 5.99 5.99 Total: -1.00 -32.40 397.19 -9.91 -42.31 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: -6.90 Total: 8.06 kcal Atomic # 6 Polarization: -8.31 SS G_CDS: -2.92 Total: -11.23 kcal Atomic # 7 Polarization: -30.13 SS G_CDS: 0.60 Total: -29.53 kcal Atomic # 8 Polarization: -26.86 SS G_CDS: -1.63 Total: -28.48 kcal Atomic # 14 Polarization: 17.92 SS G_CDS: -5.04 Total: 12.88 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -32.40 -9.91 -42.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000757135362.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.592 kcal (2) G-P(sol) polarization free energy of solvation -32.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds