Wall clock time and date at job start Wed Apr 1 2020 04:15:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53004 * 109.47121 * 2 1 4 4 H 1.08998 * 110.55445 * 307.88274 * 3 2 1 5 5 C 1.54990 * 110.62172 * 184.99795 * 3 2 1 6 6 C 1.54808 * 102.09428 * 204.32011 * 5 3 2 7 7 C 1.54094 * 104.18919 * 20.88155 * 6 5 3 8 8 H 1.08994 * 109.88406 * 242.45855 * 7 6 5 9 9 C 1.50705 * 109.87895 * 121.45198 * 7 6 5 10 10 O 1.20824 * 120.00163 * 244.99884 * 9 7 6 11 11 O 1.34229 * 119.99696 * 65.00342 * 9 7 6 12 12 C 1.45197 * 116.99901 * 179.97438 * 11 9 7 13 13 C 1.50699 * 109.47210 * 179.97438 * 12 11 9 14 14 O 1.21280 * 119.99848 * 0.02562 * 13 12 11 15 15 N 1.34783 * 120.00025 * 180.27563 * 13 12 11 16 16 C 1.39231 * 119.99892 * 176.42825 * 15 13 12 17 17 C 1.39478 * 119.83157 * 217.48529 * 16 15 13 18 18 C 1.36377 * 120.16866 * 179.71840 * 17 16 15 19 19 C 1.40871 * 119.83041 * 0.53160 * 18 17 16 20 20 C 1.41150 * 120.16989 * 179.71933 * 19 18 17 21 21 H 1.07998 * 119.99942 * 157.96712 * 20 19 18 22 22 C 1.39910 * 119.99676 * 337.96973 * 20 19 18 23 23 N 1.30875 * 119.99936 * 327.62266 * 22 20 19 24 24 Si 1.86799 * 119.99796 * 147.62490 * 22 20 19 25 25 H 1.48506 * 109.47000 * 94.98463 * 24 22 20 26 26 H 1.48501 * 109.47028 * 214.98462 * 24 22 20 27 27 H 1.48501 * 109.47242 * 334.98613 * 24 22 20 28 28 C 1.40872 * 119.66595 * 359.74385 * 19 18 17 29 29 C 1.36371 * 119.83028 * 359.97438 * 28 19 18 30 30 O 1.43749 * 107.29219 * 2.02942 * 7 6 5 31 31 H 1.08997 * 109.47431 * 59.99933 * 1 2 3 32 32 H 1.09003 * 109.46743 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.47431 * 299.99610 * 1 2 3 34 34 H 1.09005 * 109.47431 * 240.00390 * 2 1 3 35 35 H 1.09004 * 109.47741 * 120.00282 * 2 1 3 36 36 H 1.08998 * 110.90719 * 86.12231 * 5 3 2 37 37 H 1.09003 * 110.94322 * 322.53450 * 5 3 2 38 38 H 1.09000 * 110.48979 * 262.20236 * 6 5 3 39 39 H 1.09004 * 110.60397 * 139.61793 * 6 5 3 40 40 H 1.09003 * 109.47192 * 60.00073 * 12 11 9 41 41 H 1.09002 * 109.47538 * 300.00036 * 12 11 9 42 42 H 0.96996 * 119.99926 * 356.42441 * 15 13 12 43 43 H 1.07998 * 119.91815 * 359.97438 * 17 16 15 44 44 H 1.08004 * 120.08660 * 180.29515 * 18 17 16 45 45 H 0.96991 * 119.99650 * 179.97438 * 23 22 20 46 46 H 1.08005 * 120.08187 * 179.97438 * 28 19 18 47 47 H 1.08004 * 119.91392 * 180.02562 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5766 2.0122 -0.8055 5 6 3.5843 1.4755 -0.1264 6 6 3.9328 2.8428 0.5105 7 6 2.7067 3.1770 1.3820 8 1 2.2325 4.0893 1.0205 9 6 3.1311 3.3542 2.8172 10 8 2.7408 2.5838 3.6622 11 8 3.9425 4.3681 3.1567 12 6 4.3097 4.4780 4.5572 13 6 5.2182 5.6653 4.7467 14 8 5.5254 6.3517 3.7952 15 7 5.6932 5.9615 5.9728 16 6 6.5911 7.0130 6.1361 17 6 7.6340 6.8983 7.0552 18 6 8.5208 7.9217 7.2166 19 6 8.3750 9.1012 6.4603 20 6 9.2853 10.1672 6.6260 21 1 9.4091 10.8985 5.8409 22 6 10.0272 10.2764 7.8071 23 7 9.5140 9.8738 8.9418 24 14 11.7501 10.9968 7.7646 25 1 11.6891 12.4451 8.0870 26 1 12.6017 10.3026 8.7637 27 1 12.3292 10.8154 6.4092 28 6 7.3157 9.2118 5.5383 29 6 6.4402 8.1777 5.3837 30 8 1.7928 2.0724 1.2754 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5139 0.8900 36 1 3.8897 1.4445 -1.1722 37 1 4.0386 0.6583 0.4340 38 1 4.0696 3.5997 -0.2618 39 1 4.8282 2.7618 1.1268 40 1 4.8278 3.5711 4.8692 41 1 3.4106 4.6082 5.1595 42 1 5.4094 5.4422 6.7413 43 1 7.7420 5.9952 7.6375 44 1 9.3307 7.8297 7.9252 45 1 10.0285 9.9491 9.7605 46 1 7.1973 10.1132 4.9552 47 1 5.6279 8.2608 4.6769 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000757135362.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:15:56 Heat of formation + Delta-G solvation = -166.541605 kcal Electronic energy + Delta-G solvation = -29050.182785 eV Core-core repulsion = 24775.988374 eV Total energy + Delta-G solvation = -4274.194412 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.07443 -41.16685 -40.23809 -39.05016 -37.55920 -36.21588 -34.87113 -34.66540 -33.29285 -31.63902 -31.38889 -30.42011 -29.20283 -26.64319 -25.49349 -23.58522 -23.05455 -22.65400 -22.03759 -21.92193 -21.41564 -19.35950 -19.01008 -18.88283 -18.12642 -17.82727 -17.50866 -17.36837 -17.01330 -16.58633 -16.01828 -15.83073 -15.61737 -15.05945 -14.89559 -14.74091 -14.62097 -14.44757 -14.16871 -13.97425 -13.94086 -13.83140 -13.80081 -13.33586 -12.94515 -12.84970 -12.76735 -12.69808 -12.45894 -12.34275 -12.12647 -11.99133 -11.93087 -11.79009 -11.61220 -11.57744 -11.47879 -11.19077 -10.86552 -10.78520 -10.51839 -9.49695 -9.05041 -8.75273 -6.25352 0.75728 0.93313 0.99187 1.12588 1.35643 1.40971 1.53557 1.68159 2.19480 2.28186 2.62358 2.84289 3.36306 3.48852 3.58375 3.70533 3.76792 3.79358 3.97180 3.99561 4.12648 4.16195 4.28619 4.37615 4.38063 4.47025 4.53016 4.76335 4.85456 4.88512 4.91282 4.96106 5.05889 5.09270 5.09949 5.11781 5.13448 5.20862 5.24703 5.40183 5.42763 5.62435 5.75572 5.83862 5.99332 6.06095 6.33258 6.48638 6.59377 6.64358 6.87558 6.95978 7.27867 8.18904 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.035111 B = 0.001592 C = 0.001563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.270636 B =17586.352872 C =17906.365344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.117 4.117 3 C 0.067 3.933 4 H 0.096 0.904 5 C -0.146 4.146 6 C -0.143 4.143 7 C 0.089 3.911 8 H 0.130 0.870 9 C 0.462 3.538 10 O -0.518 6.518 11 O -0.340 6.340 12 C 0.059 3.941 13 C 0.502 3.498 14 O -0.556 6.556 15 N -0.633 5.633 16 C -0.013 4.013 17 C -0.096 4.096 18 C -0.190 4.190 19 C 0.084 3.916 20 C -0.504 4.504 21 H 0.076 0.924 22 C 0.053 3.947 23 N -0.796 5.796 24 Si 0.971 3.029 25 H -0.260 1.260 26 H -0.261 1.261 27 H -0.261 1.261 28 C -0.245 4.245 29 C -0.075 4.075 30 O -0.371 6.371 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.040 0.960 34 H 0.102 0.898 35 H 0.057 0.943 36 H 0.115 0.885 37 H 0.074 0.926 38 H 0.115 0.885 39 H 0.074 0.926 40 H 0.124 0.876 41 H 0.124 0.876 42 H 0.419 0.581 43 H 0.126 0.874 44 H 0.099 0.901 45 H 0.295 0.705 46 H 0.093 0.907 47 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.844 -18.189 -13.913 25.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.154 4.154 3 C 0.011 3.989 4 H 0.113 0.887 5 C -0.183 4.183 6 C -0.181 4.181 7 C 0.030 3.970 8 H 0.148 0.852 9 C 0.305 3.695 10 O -0.406 6.406 11 O -0.255 6.255 12 C -0.018 4.018 13 C 0.289 3.711 14 O -0.434 6.434 15 N -0.280 5.280 16 C -0.105 4.105 17 C -0.116 4.116 18 C -0.209 4.209 19 C 0.081 3.919 20 C -0.531 4.531 21 H 0.094 0.906 22 C -0.167 4.167 23 N -0.420 5.420 24 Si 0.791 3.209 25 H -0.184 1.184 26 H -0.185 1.185 27 H -0.185 1.185 28 C -0.265 4.265 29 C -0.095 4.095 30 O -0.291 6.291 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.059 0.941 34 H 0.121 0.879 35 H 0.076 0.924 36 H 0.133 0.867 37 H 0.093 0.907 38 H 0.134 0.866 39 H 0.093 0.907 40 H 0.142 0.858 41 H 0.142 0.858 42 H 0.257 0.743 43 H 0.144 0.856 44 H 0.117 0.883 45 H 0.106 0.894 46 H 0.111 0.889 47 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -11.899 -18.043 -13.888 25.690 hybrid contribution 0.604 0.465 0.894 1.175 sum -11.295 -17.577 -12.994 24.605 Atomic orbital electron populations 1.21740 0.95235 1.02125 1.01792 1.21605 0.96782 0.93590 1.03420 1.23624 0.95244 0.95091 0.84987 0.88670 1.23248 0.95109 0.96275 1.03691 1.22958 0.95767 0.99843 0.99522 1.22344 0.93321 0.94224 0.87096 0.85225 1.24226 0.74989 0.77396 0.92928 1.90666 1.53367 1.44100 1.52488 1.86526 1.61175 1.48785 1.29055 1.22728 1.00419 0.97869 0.80781 1.20540 0.81621 0.85949 0.83012 1.90722 1.59206 1.52270 1.41229 1.42586 1.44028 1.32413 1.08999 1.17049 0.97196 0.89583 1.06708 1.20441 0.93557 0.98779 0.98800 1.20650 1.01613 0.94015 1.04660 1.17934 0.90382 0.93067 0.90486 1.19736 1.20801 1.10467 1.02080 0.90616 1.26722 1.02832 0.93641 0.93489 1.69935 1.38009 1.34185 0.99833 0.85373 0.76780 0.79105 0.79613 1.18412 1.18467 1.18532 1.20721 0.99245 0.99349 1.07171 1.20422 0.98585 0.92208 0.98262 1.88979 1.56053 1.44563 1.39479 0.91650 0.91852 0.94113 0.87948 0.92383 0.86697 0.90717 0.86625 0.90724 0.85795 0.85829 0.74294 0.85639 0.88271 0.89404 0.88914 0.87958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 9.86 71.98 0.71 -1.03 16 2 C -0.12 -1.29 5.70 30.59 0.17 -1.12 16 3 C 0.07 0.84 3.28 31.28 0.10 0.94 16 4 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 5 C -0.15 -1.52 6.58 31.89 0.21 -1.31 16 6 C -0.14 -1.97 6.63 31.58 0.21 -1.76 16 7 C 0.09 1.66 3.96 30.22 0.12 1.78 16 8 H 0.13 1.89 8.14 -2.39 -0.02 1.88 16 9 C 0.46 11.53 7.06 71.24 0.50 12.03 16 10 O -0.52 -15.53 16.27 28.31 0.46 -15.07 16 11 O -0.34 -9.11 9.75 -45.05 -0.44 -9.55 16 12 C 0.06 1.42 5.95 71.24 0.42 1.84 16 13 C 0.50 16.58 7.72 87.66 0.68 17.26 16 14 O -0.56 -23.76 14.12 15.77 0.22 -23.54 16 15 N -0.63 -20.58 5.30 -303.11 -1.61 -22.18 16 16 C -0.01 -0.54 6.25 38.56 0.24 -0.30 16 17 C -0.10 -4.21 9.90 22.13 0.22 -3.99 16 18 C -0.19 -9.67 8.74 22.48 0.20 -9.48 16 19 C 0.08 4.59 5.57 -21.27 -0.12 4.47 16 20 C -0.50 -27.23 8.94 23.39 0.21 -27.02 16 21 H 0.08 4.02 8.02 -2.91 -0.02 4.00 16 22 C 0.05 2.61 4.77 85.24 0.41 3.02 16 23 N -0.80 -39.97 11.78 21.82 0.26 -39.71 16 24 Si 0.97 36.90 29.66 68.60 2.03 38.94 16 25 H -0.26 -9.41 7.11 99.48 0.71 -8.70 16 26 H -0.26 -9.27 7.11 99.48 0.71 -8.56 16 27 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 28 C -0.24 -12.84 9.74 22.48 0.22 -12.62 16 29 C -0.07 -3.63 8.59 22.13 0.19 -3.44 16 30 O -0.37 -7.63 10.31 -130.22 -1.34 -8.97 16 31 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.04 0.64 8.06 -2.38 -0.02 0.62 16 34 H 0.10 0.63 8.14 -2.38 -0.02 0.61 16 35 H 0.06 0.82 8.14 -2.38 -0.02 0.81 16 36 H 0.11 0.59 8.14 -2.39 -0.02 0.58 16 37 H 0.07 0.89 8.06 -2.39 -0.02 0.87 16 38 H 0.12 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.07 1.23 7.69 -2.39 -0.02 1.21 16 40 H 0.12 2.44 8.13 -2.39 -0.02 2.42 16 41 H 0.12 2.43 8.13 -2.39 -0.02 2.41 16 42 H 0.42 9.86 8.82 -92.71 -0.82 9.04 16 43 H 0.13 4.54 8.06 -2.91 -0.02 4.52 16 44 H 0.10 5.14 6.53 -2.91 -0.02 5.12 16 45 H 0.30 13.11 8.30 -92.72 -0.77 12.34 16 46 H 0.09 4.72 8.06 -2.91 -0.02 4.69 16 47 H 0.10 4.91 6.44 -2.91 -0.02 4.89 16 Total: -1.00 -72.74 397.19 4.46 -68.29 By element: Atomic # 1 Polarization: 32.35 SS G_CDS: 0.17 Total: 32.53 kcal Atomic # 6 Polarization: -25.43 SS G_CDS: 4.69 Total: -20.73 kcal Atomic # 7 Polarization: -60.54 SS G_CDS: -1.35 Total: -61.89 kcal Atomic # 8 Polarization: -56.03 SS G_CDS: -1.10 Total: -57.13 kcal Atomic # 14 Polarization: 36.90 SS G_CDS: 2.03 Total: 38.94 kcal Total: -72.74 4.46 -68.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000757135362.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.252 kcal (2) G-P(sol) polarization free energy of solvation -72.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds