Wall clock time and date at job start Wed Apr 1 2020 04:16:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53004 * 109.47030 * 2 1 4 4 H 1.08998 * 109.82242 * 54.43733 * 3 2 1 5 5 C 1.54384 * 109.90469 * 175.36877 * 3 2 1 6 6 C 1.55410 * 102.31005 * 140.84230 * 5 3 2 7 7 C 1.54943 * 100.89287 * 325.98953 * 6 5 3 8 8 H 1.09003 * 110.30960 * 277.35608 * 7 6 5 9 9 C 1.50697 * 110.30909 * 155.28845 * 7 6 5 10 10 O 1.20827 * 119.99936 * 246.38832 * 9 7 6 11 11 O 1.34227 * 120.00275 * 66.39249 * 9 7 6 12 12 C 1.45204 * 117.00198 * 180.02562 * 11 9 7 13 13 C 1.50707 * 109.46923 * 179.97438 * 12 11 9 14 14 O 1.21279 * 120.00187 * 359.97438 * 13 12 11 15 15 N 1.34778 * 119.99746 * 180.02562 * 13 12 11 16 16 C 1.39232 * 119.99978 * 175.50896 * 15 13 12 17 17 C 1.39484 * 119.83294 * 35.86558 * 16 15 13 18 18 C 1.36372 * 120.16820 * 180.02562 * 17 16 15 19 19 C 1.40869 * 119.82962 * 359.97361 * 18 17 16 20 20 C 1.41150 * 120.16340 * 179.97438 * 19 18 17 21 21 H 1.08010 * 120.00097 * 205.47081 * 20 19 18 22 22 C 1.39909 * 120.00131 * 25.47227 * 20 19 18 23 23 N 1.30871 * 120.00012 * 17.01714 * 22 20 19 24 24 Si 1.86803 * 120.00012 * 197.01226 * 22 20 19 25 25 H 1.48499 * 109.46804 * 90.00083 * 24 22 20 26 26 H 1.48501 * 109.47273 * 210.00134 * 24 22 20 27 27 H 1.48504 * 109.47301 * 330.00315 * 24 22 20 28 28 C 1.40865 * 119.67262 * 359.96563 * 19 18 17 29 29 C 1.36377 * 119.82823 * 0.07437 * 28 19 18 30 30 O 1.43236 * 109.83460 * 293.54550 * 3 2 1 31 31 H 1.09000 * 109.47198 * 300.00115 * 1 2 3 32 32 H 1.09001 * 109.47247 * 59.99881 * 1 2 3 33 33 H 1.08998 * 109.47268 * 179.97438 * 1 2 3 34 34 H 1.09000 * 109.47000 * 240.00401 * 2 1 3 35 35 H 1.09001 * 109.47247 * 120.00119 * 2 1 3 36 36 H 1.09000 * 110.84636 * 259.10568 * 5 3 2 37 37 H 1.08997 * 110.85232 * 22.51849 * 5 3 2 38 38 H 1.09004 * 111.21383 * 208.05737 * 6 5 3 39 39 H 1.09003 * 111.08281 * 83.86766 * 6 5 3 40 40 H 1.09002 * 109.47073 * 59.99799 * 12 11 9 41 41 H 1.08995 * 109.46712 * 299.99315 * 12 11 9 42 42 H 0.97000 * 119.99934 * 355.50133 * 15 13 12 43 43 H 1.07995 * 119.91772 * 359.97438 * 17 16 15 44 44 H 1.08006 * 120.08829 * 179.70215 * 18 17 16 45 45 H 0.96999 * 119.99901 * 180.02562 * 23 22 20 46 46 H 1.07998 * 120.08879 * 180.02562 * 28 19 18 47 47 H 1.08004 * 119.91694 * 179.97438 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6008 1.9898 0.8341 5 6 3.5792 1.4558 0.1172 6 6 3.9749 2.6098 -0.8457 7 6 2.8861 2.4655 -1.9386 8 1 3.1689 1.6940 -2.6548 9 6 2.6752 3.7805 -2.6436 10 8 1.6245 4.3659 -2.5287 11 8 3.6545 4.3016 -3.3994 12 6 3.3816 5.5715 -4.0484 13 6 4.5871 5.9969 -4.8467 14 8 5.5786 5.2988 -4.8662 15 7 4.5635 7.1536 -5.5380 16 6 5.7074 7.5930 -6.1990 17 6 6.5615 6.6672 -6.7981 18 6 7.6840 7.0900 -7.4468 19 6 7.9798 8.4657 -7.5114 20 6 9.1401 8.9111 -8.1805 21 1 9.5943 9.8518 -7.9059 22 6 9.7017 8.1341 -9.1994 23 7 8.9981 7.1847 -9.7618 24 14 11.4560 8.4519 -9.7573 25 1 12.3891 7.6242 -8.9515 26 1 11.5913 8.0954 -11.1925 27 1 11.7820 9.8887 -9.5712 28 6 7.1118 9.3948 -6.9050 29 6 5.9934 8.9569 -6.2591 30 8 1.6944 2.0802 -1.2352 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 1.8932 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 3.8886 1.6785 1.1384 37 1 4.0019 0.5081 -0.2163 38 1 4.9708 2.4536 -1.2602 39 1 3.9060 3.5770 -0.3477 40 1 3.1619 6.3258 -3.2929 41 1 2.5249 5.4628 -4.7134 42 1 3.7495 7.6799 -5.5752 43 1 6.3336 5.6127 -6.7474 44 1 8.3470 6.3716 -7.9061 45 1 9.3876 6.6458 -10.4680 46 1 7.3318 10.4512 -6.9508 47 1 5.3271 9.6679 -5.7933 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000757135363.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:16:00 Heat of formation + Delta-G solvation = -147.591736 kcal Electronic energy + Delta-G solvation = -29119.315290 eV Core-core repulsion = 24845.942607 eV Total energy + Delta-G solvation = -4273.372684 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.07634 -39.92343 -39.29013 -37.34063 -36.41632 -34.51662 -34.02407 -33.04813 -32.67139 -30.22638 -29.52798 -29.24336 -28.00658 -25.16089 -24.55982 -22.41958 -21.94743 -21.50587 -21.08918 -20.65037 -19.71964 -18.39779 -17.63091 -17.34158 -17.07581 -16.75525 -16.51026 -15.98990 -15.75459 -15.22542 -14.77624 -14.68021 -14.32751 -14.04260 -13.83281 -13.58760 -13.39212 -13.31619 -13.09854 -12.71076 -12.65514 -12.32146 -12.27659 -12.07983 -11.90669 -11.87455 -11.42913 -11.41422 -11.31837 -11.15248 -11.15026 -11.13291 -10.91837 -10.71092 -10.67168 -9.99747 -9.95215 -9.72987 -9.45808 -9.10146 -8.93384 -7.56574 -7.07043 -6.77527 -4.34622 1.89256 1.96491 2.48325 2.92841 3.05450 3.07848 3.09460 3.24987 3.37213 3.66974 3.90888 3.96463 4.19875 4.34880 4.55560 4.58109 4.59369 4.71199 4.77137 4.87127 4.95049 4.99349 4.99619 5.02896 5.28890 5.32610 5.43305 5.45821 5.56430 5.59729 5.66749 5.81821 5.95225 6.09016 6.11440 6.35914 6.46092 6.71718 6.92935 7.00274 7.10747 7.23591 7.48881 7.55914 7.62555 7.89312 8.01927 8.12899 8.25212 8.57958 8.64353 8.84486 8.95135 10.14783 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.023851 B = 0.001692 C = 0.001627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.672008 B =16547.987145 C =17202.160958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.133 4.133 3 C 0.077 3.923 4 H 0.085 0.915 5 C -0.150 4.150 6 C -0.143 4.143 7 C 0.094 3.906 8 H 0.114 0.886 9 C 0.460 3.540 10 O -0.490 6.490 11 O -0.326 6.326 12 C 0.052 3.948 13 C 0.499 3.501 14 O -0.508 6.508 15 N -0.644 5.644 16 C -0.013 4.013 17 C -0.084 4.084 18 C -0.156 4.156 19 C 0.107 3.893 20 C -0.457 4.457 21 H 0.079 0.921 22 C 0.074 3.926 23 N -0.789 5.789 24 Si 0.910 3.090 25 H -0.267 1.267 26 H -0.278 1.278 27 H -0.262 1.262 28 C -0.216 4.216 29 C -0.100 4.100 30 O -0.348 6.348 31 H 0.053 0.947 32 H 0.062 0.938 33 H 0.053 0.947 34 H 0.069 0.931 35 H 0.074 0.926 36 H 0.089 0.911 37 H 0.085 0.915 38 H 0.104 0.896 39 H 0.085 0.915 40 H 0.100 0.900 41 H 0.099 0.901 42 H 0.396 0.604 43 H 0.106 0.894 44 H 0.120 0.880 45 H 0.282 0.718 46 H 0.097 0.903 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.127 -11.421 16.410 23.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.170 4.170 3 C 0.019 3.981 4 H 0.103 0.897 5 C -0.188 4.188 6 C -0.181 4.181 7 C 0.035 3.965 8 H 0.131 0.869 9 C 0.301 3.699 10 O -0.377 6.377 11 O -0.241 6.241 12 C -0.025 4.025 13 C 0.283 3.717 14 O -0.383 6.383 15 N -0.289 5.289 16 C -0.104 4.104 17 C -0.104 4.104 18 C -0.176 4.176 19 C 0.104 3.896 20 C -0.487 4.487 21 H 0.097 0.903 22 C -0.144 4.144 23 N -0.414 5.414 24 Si 0.734 3.266 25 H -0.192 1.192 26 H -0.203 1.203 27 H -0.186 1.186 28 C -0.236 4.236 29 C -0.120 4.120 30 O -0.267 6.267 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.072 0.928 34 H 0.088 0.912 35 H 0.093 0.907 36 H 0.107 0.893 37 H 0.104 0.896 38 H 0.122 0.878 39 H 0.104 0.896 40 H 0.118 0.882 41 H 0.117 0.883 42 H 0.230 0.770 43 H 0.124 0.876 44 H 0.138 0.862 45 H 0.093 0.907 46 H 0.115 0.885 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -11.935 -11.878 16.170 23.345 hybrid contribution 0.287 0.532 -0.350 0.699 sum -11.648 -11.346 15.820 22.686 Atomic orbital electron populations 1.21719 0.95116 1.01512 1.02489 1.21912 0.97199 0.95247 1.02666 1.22943 0.94531 0.93788 0.86793 0.89719 1.23237 0.94910 0.99432 1.01209 1.23257 0.99407 1.00312 0.95092 1.22315 0.86927 0.91591 0.95678 0.86866 1.23541 0.81874 0.87315 0.77139 1.90688 1.26999 1.60716 1.59249 1.86530 1.42670 1.36469 1.58426 1.22762 0.98013 0.84327 0.97428 1.19889 0.88447 0.82748 0.80575 1.90739 1.33453 1.52157 1.61944 1.42731 1.13809 1.22615 1.49696 1.17124 0.92472 0.92901 1.07943 1.20537 0.95572 0.97830 0.96471 1.20988 0.98073 0.96101 1.02454 1.17691 0.91310 0.91394 0.89166 1.19581 1.08578 1.05594 1.14910 0.90294 1.25942 0.99296 0.93828 0.95328 1.69841 1.36450 1.16324 1.18813 0.86286 0.82216 0.80011 0.78065 1.19217 1.20291 1.18590 1.20546 0.96679 0.97858 1.08501 1.20041 0.97990 0.92608 1.01381 1.88543 1.27136 1.77671 1.33326 0.92826 0.91858 0.92812 0.91227 0.90748 0.89258 0.89603 0.87766 0.89638 0.88240 0.88297 0.76996 0.87579 0.86221 0.90743 0.88530 0.89082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.82 37.15 0.36 -0.65 16 2 C -0.13 -0.81 5.51 -26.73 -0.15 -0.95 16 3 C 0.08 0.56 3.51 -26.00 -0.09 0.47 16 4 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 5 C -0.15 -0.85 6.55 -24.73 -0.16 -1.02 16 6 C -0.14 -1.10 6.57 -24.43 -0.16 -1.26 16 7 C 0.09 0.94 3.97 -26.86 -0.11 0.83 16 8 H 0.11 0.94 8.14 -51.93 -0.42 0.52 16 9 C 0.46 5.98 7.30 36.00 0.26 6.24 16 10 O -0.49 -7.54 16.30 -25.32 -0.41 -7.95 16 11 O -0.33 -4.58 9.75 -45.89 -0.45 -5.03 16 12 C 0.05 0.68 5.95 36.01 0.21 0.90 16 13 C 0.50 8.62 7.74 -10.98 -0.08 8.53 16 14 O -0.51 -11.03 13.95 -14.10 -0.20 -11.22 16 15 N -0.64 -10.98 5.30 -9.74 -0.05 -11.03 16 16 C -0.01 -0.28 6.30 -83.57 -0.53 -0.80 16 17 C -0.08 -2.08 8.61 -39.79 -0.34 -2.42 16 18 C -0.16 -4.14 8.62 -39.26 -0.34 -4.48 16 19 C 0.11 2.84 5.57 -106.80 -0.59 2.24 16 20 C -0.46 -11.99 9.04 -37.85 -0.34 -12.33 16 21 H 0.08 1.98 7.90 -52.48 -0.41 1.56 16 22 C 0.07 1.85 5.14 -17.34 -0.09 1.76 16 23 N -0.79 -20.33 10.97 55.55 0.61 -19.73 16 24 Si 0.91 18.51 29.59 -169.99 -5.03 13.48 16 25 H -0.27 -5.41 7.11 56.52 0.40 -5.00 16 26 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 27 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 28 C -0.22 -5.15 9.74 -39.26 -0.38 -5.53 16 29 C -0.10 -2.15 9.90 -39.79 -0.39 -2.54 16 30 O -0.35 -3.74 9.88 -54.62 -0.54 -4.28 16 31 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.53 7.88 -51.93 -0.41 0.12 16 33 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 34 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.09 0.40 7.85 -51.93 -0.41 -0.01 16 38 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.08 0.69 8.05 -51.93 -0.42 0.27 16 40 H 0.10 1.10 8.13 -51.93 -0.42 0.68 16 41 H 0.10 1.10 8.13 -51.93 -0.42 0.68 16 42 H 0.40 5.10 8.82 -40.82 -0.36 4.74 16 43 H 0.11 2.63 6.26 -52.49 -0.33 2.30 16 44 H 0.12 3.29 6.20 -52.48 -0.33 2.97 16 45 H 0.28 6.60 8.30 -40.82 -0.34 6.26 16 46 H 0.10 2.14 8.06 -52.49 -0.42 1.72 16 47 H 0.09 1.64 8.06 -52.48 -0.42 1.21 16 LS Contribution 395.69 15.07 5.96 5.96 Total: -1.00 -32.67 395.69 -9.90 -42.57 By element: Atomic # 1 Polarization: 15.11 SS G_CDS: -6.87 Total: 8.23 kcal Atomic # 6 Polarization: -8.09 SS G_CDS: -2.92 Total: -11.01 kcal Atomic # 7 Polarization: -31.31 SS G_CDS: 0.56 Total: -30.76 kcal Atomic # 8 Polarization: -26.89 SS G_CDS: -1.60 Total: -28.49 kcal Atomic # 14 Polarization: 18.51 SS G_CDS: -5.03 Total: 13.48 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -32.67 -9.90 -42.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000757135363.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.021 kcal (2) G-P(sol) polarization free energy of solvation -32.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds