Wall clock time and date at job start Wed Apr 1 2020 04:15:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53004 * 109.47030 * 2 1 4 4 H 1.08998 * 109.82242 * 54.43733 * 3 2 1 5 5 C 1.54384 * 109.90469 * 175.36877 * 3 2 1 6 6 C 1.55410 * 102.31005 * 140.84230 * 5 3 2 7 7 C 1.54943 * 100.89287 * 325.98953 * 6 5 3 8 8 H 1.09003 * 110.30960 * 277.35608 * 7 6 5 9 9 C 1.50697 * 110.30909 * 155.28845 * 7 6 5 10 10 O 1.20827 * 119.99936 * 246.38832 * 9 7 6 11 11 O 1.34227 * 120.00275 * 66.39249 * 9 7 6 12 12 C 1.45204 * 117.00198 * 180.02562 * 11 9 7 13 13 C 1.50707 * 109.46923 * 179.97438 * 12 11 9 14 14 O 1.21279 * 120.00187 * 359.97438 * 13 12 11 15 15 N 1.34778 * 119.99746 * 180.02562 * 13 12 11 16 16 C 1.39232 * 119.99978 * 175.50896 * 15 13 12 17 17 C 1.39484 * 119.83294 * 35.86558 * 16 15 13 18 18 C 1.36372 * 120.16820 * 180.02562 * 17 16 15 19 19 C 1.40869 * 119.82962 * 359.97361 * 18 17 16 20 20 C 1.41150 * 120.16340 * 179.97438 * 19 18 17 21 21 H 1.08010 * 120.00097 * 205.47081 * 20 19 18 22 22 C 1.39909 * 120.00131 * 25.47227 * 20 19 18 23 23 N 1.30871 * 120.00012 * 17.01714 * 22 20 19 24 24 Si 1.86803 * 120.00012 * 197.01226 * 22 20 19 25 25 H 1.48499 * 109.46804 * 90.00083 * 24 22 20 26 26 H 1.48501 * 109.47273 * 210.00134 * 24 22 20 27 27 H 1.48504 * 109.47301 * 330.00315 * 24 22 20 28 28 C 1.40865 * 119.67262 * 359.96563 * 19 18 17 29 29 C 1.36377 * 119.82823 * 0.07437 * 28 19 18 30 30 O 1.43236 * 109.83460 * 293.54550 * 3 2 1 31 31 H 1.09000 * 109.47198 * 300.00115 * 1 2 3 32 32 H 1.09001 * 109.47247 * 59.99881 * 1 2 3 33 33 H 1.08998 * 109.47268 * 179.97438 * 1 2 3 34 34 H 1.09000 * 109.47000 * 240.00401 * 2 1 3 35 35 H 1.09001 * 109.47247 * 120.00119 * 2 1 3 36 36 H 1.09000 * 110.84636 * 259.10568 * 5 3 2 37 37 H 1.08997 * 110.85232 * 22.51849 * 5 3 2 38 38 H 1.09004 * 111.21383 * 208.05737 * 6 5 3 39 39 H 1.09003 * 111.08281 * 83.86766 * 6 5 3 40 40 H 1.09002 * 109.47073 * 59.99799 * 12 11 9 41 41 H 1.08995 * 109.46712 * 299.99315 * 12 11 9 42 42 H 0.97000 * 119.99934 * 355.50133 * 15 13 12 43 43 H 1.07995 * 119.91772 * 359.97438 * 17 16 15 44 44 H 1.08006 * 120.08829 * 179.70215 * 18 17 16 45 45 H 0.96999 * 119.99901 * 180.02562 * 23 22 20 46 46 H 1.07998 * 120.08879 * 180.02562 * 28 19 18 47 47 H 1.08004 * 119.91694 * 179.97438 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6008 1.9898 0.8341 5 6 3.5792 1.4558 0.1172 6 6 3.9749 2.6098 -0.8457 7 6 2.8861 2.4655 -1.9386 8 1 3.1689 1.6940 -2.6548 9 6 2.6752 3.7805 -2.6436 10 8 1.6245 4.3659 -2.5287 11 8 3.6545 4.3016 -3.3994 12 6 3.3816 5.5715 -4.0484 13 6 4.5871 5.9969 -4.8467 14 8 5.5786 5.2988 -4.8662 15 7 4.5635 7.1536 -5.5380 16 6 5.7074 7.5930 -6.1990 17 6 6.5615 6.6672 -6.7981 18 6 7.6840 7.0900 -7.4468 19 6 7.9798 8.4657 -7.5114 20 6 9.1401 8.9111 -8.1805 21 1 9.5943 9.8518 -7.9059 22 6 9.7017 8.1341 -9.1994 23 7 8.9981 7.1847 -9.7618 24 14 11.4560 8.4519 -9.7573 25 1 12.3891 7.6242 -8.9515 26 1 11.5913 8.0954 -11.1925 27 1 11.7820 9.8887 -9.5712 28 6 7.1118 9.3948 -6.9050 29 6 5.9934 8.9569 -6.2591 30 8 1.6944 2.0802 -1.2352 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 1.8932 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 3.8886 1.6785 1.1384 37 1 4.0019 0.5081 -0.2163 38 1 4.9708 2.4536 -1.2602 39 1 3.9060 3.5770 -0.3477 40 1 3.1619 6.3258 -3.2929 41 1 2.5249 5.4628 -4.7134 42 1 3.7495 7.6799 -5.5752 43 1 6.3336 5.6127 -6.7474 44 1 8.3470 6.3716 -7.9061 45 1 9.3876 6.6458 -10.4680 46 1 7.3318 10.4512 -6.9508 47 1 5.3271 9.6679 -5.7933 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000757135363.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:15:59 Heat of formation + Delta-G solvation = -165.663814 kcal Electronic energy + Delta-G solvation = -29120.098954 eV Core-core repulsion = 24845.942607 eV Total energy + Delta-G solvation = -4274.156348 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.06002 -41.18943 -40.30976 -39.05264 -37.56581 -36.22167 -34.79962 -34.58479 -33.30576 -31.67110 -31.28463 -30.41812 -29.21335 -26.66427 -25.52376 -23.39829 -23.06997 -22.86109 -22.42541 -21.42550 -21.28482 -19.30383 -19.26881 -18.91718 -18.07290 -17.74196 -17.69874 -17.22031 -17.07252 -16.53908 -16.07204 -15.78085 -15.48653 -15.17004 -15.02860 -14.64157 -14.51295 -14.27071 -14.08562 -13.96289 -13.90937 -13.82722 -13.67431 -13.27044 -13.09690 -12.90537 -12.88040 -12.79816 -12.44708 -12.41220 -11.99658 -11.98120 -11.83298 -11.73180 -11.67278 -11.54186 -11.50867 -11.19145 -10.87217 -10.67429 -10.60772 -9.46315 -8.90789 -8.61720 -6.29241 0.75133 0.92035 0.98586 1.14046 1.37932 1.41933 1.52390 1.67927 2.20738 2.26481 2.73428 2.82999 3.32933 3.48772 3.58852 3.71175 3.74278 3.91741 3.94206 4.00212 4.03229 4.17987 4.27024 4.43422 4.45155 4.47697 4.49662 4.77120 4.84823 4.94241 4.95728 4.95933 5.05819 5.08158 5.10845 5.12576 5.16019 5.28671 5.31473 5.40036 5.42918 5.67229 5.83005 5.85181 6.05058 6.09346 6.32254 6.48955 6.63050 6.67411 6.91695 6.98509 7.28010 8.32407 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.023851 B = 0.001692 C = 0.001627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.672008 B =16547.987145 C =17202.160958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.129 4.129 3 C 0.068 3.932 4 H 0.085 0.915 5 C -0.140 4.140 6 C -0.142 4.142 7 C 0.091 3.909 8 H 0.129 0.871 9 C 0.463 3.537 10 O -0.518 6.518 11 O -0.340 6.340 12 C 0.059 3.941 13 C 0.501 3.499 14 O -0.556 6.556 15 N -0.634 5.634 16 C 0.001 3.999 17 C -0.099 4.099 18 C -0.181 4.181 19 C 0.075 3.925 20 C -0.493 4.493 21 H 0.081 0.919 22 C 0.032 3.968 23 N -0.825 5.825 24 Si 0.984 3.016 25 H -0.265 1.265 26 H -0.268 1.268 27 H -0.254 1.254 28 C -0.224 4.224 29 C -0.093 4.093 30 O -0.373 6.373 31 H 0.055 0.945 32 H 0.040 0.960 33 H 0.063 0.937 34 H 0.068 0.932 35 H 0.096 0.904 36 H 0.107 0.893 37 H 0.100 0.900 38 H 0.110 0.890 39 H 0.079 0.921 40 H 0.127 0.873 41 H 0.124 0.876 42 H 0.421 0.579 43 H 0.097 0.903 44 H 0.096 0.904 45 H 0.288 0.712 46 H 0.111 0.889 47 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.799 -11.298 18.052 24.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.167 4.167 3 C 0.012 3.988 4 H 0.103 0.897 5 C -0.177 4.177 6 C -0.180 4.180 7 C 0.032 3.968 8 H 0.146 0.854 9 C 0.306 3.694 10 O -0.406 6.406 11 O -0.256 6.256 12 C -0.018 4.018 13 C 0.288 3.712 14 O -0.434 6.434 15 N -0.280 5.280 16 C -0.092 4.092 17 C -0.119 4.119 18 C -0.202 4.202 19 C 0.072 3.928 20 C -0.523 4.523 21 H 0.099 0.901 22 C -0.183 4.183 23 N -0.451 5.451 24 Si 0.805 3.195 25 H -0.190 1.190 26 H -0.193 1.193 27 H -0.177 1.177 28 C -0.244 4.244 29 C -0.113 4.113 30 O -0.293 6.293 31 H 0.074 0.926 32 H 0.059 0.941 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.115 0.885 36 H 0.126 0.874 37 H 0.119 0.881 38 H 0.129 0.871 39 H 0.097 0.903 40 H 0.145 0.855 41 H 0.142 0.858 42 H 0.259 0.741 43 H 0.115 0.885 44 H 0.114 0.886 45 H 0.098 0.902 46 H 0.129 0.871 47 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -12.660 -11.739 17.830 24.819 hybrid contribution 0.315 0.455 -0.754 0.935 sum -12.345 -11.284 17.076 23.903 Atomic orbital electron populations 1.21722 0.95868 1.01841 1.01495 1.21919 0.96520 0.94584 1.03659 1.23163 0.95897 0.94242 0.85540 0.89710 1.23242 0.93445 0.99247 1.01739 1.23286 0.98905 1.00960 0.94801 1.22527 0.87570 0.90230 0.96491 0.85361 1.24164 0.81049 0.87850 0.76336 1.90667 1.27940 1.61702 1.60284 1.86530 1.43429 1.36857 1.58737 1.22745 0.95974 0.84953 0.98091 1.20587 0.89013 0.81748 0.79885 1.90731 1.35690 1.53496 1.63469 1.42590 1.13436 1.23014 1.49008 1.17185 0.92954 0.92802 1.06275 1.20580 0.96063 0.98051 0.97174 1.20875 0.99003 0.96173 1.04105 1.18031 0.92525 0.91777 0.90471 1.19848 1.09715 1.06521 1.16185 0.90058 1.26825 1.03324 0.93261 0.94926 1.69909 1.38346 1.17361 1.19512 0.85173 0.76444 0.80099 0.77820 1.19024 1.19287 1.17742 1.20829 0.97039 0.98274 1.08277 1.20412 0.97646 0.93123 1.00144 1.88526 1.27995 1.78087 1.34677 0.92557 0.94093 0.91835 0.91337 0.88533 0.87442 0.88112 0.87130 0.90271 0.85528 0.85818 0.74068 0.88535 0.88597 0.90170 0.87071 0.84510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 9.82 71.98 0.71 -1.18 16 2 C -0.13 -1.33 5.51 30.59 0.17 -1.16 16 3 C 0.07 0.89 3.51 31.07 0.11 1.00 16 4 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 5 C -0.14 -1.24 6.55 31.89 0.21 -1.03 16 6 C -0.14 -1.96 6.57 32.09 0.21 -1.75 16 7 C 0.09 1.71 3.97 30.51 0.12 1.83 16 8 H 0.13 1.99 8.14 -2.39 -0.02 1.97 16 9 C 0.46 11.56 7.30 71.24 0.52 12.08 16 10 O -0.52 -15.40 16.30 28.25 0.46 -14.94 16 11 O -0.34 -9.16 9.75 -45.03 -0.44 -9.59 16 12 C 0.06 1.42 5.95 71.24 0.42 1.84 16 13 C 0.50 16.61 7.74 87.66 0.68 17.29 16 14 O -0.56 -24.24 13.95 15.77 0.22 -24.02 16 15 N -0.63 -20.22 5.30 -303.11 -1.61 -21.82 16 16 C 0.00 0.04 6.30 38.57 0.24 0.28 16 17 C -0.10 -5.00 8.61 22.13 0.19 -4.81 16 18 C -0.18 -10.08 8.62 22.48 0.19 -9.89 16 19 C 0.07 4.06 5.57 -21.28 -0.12 3.94 16 20 C -0.49 -26.66 9.04 23.39 0.21 -26.45 16 21 H 0.08 4.17 7.90 -2.91 -0.02 4.15 16 22 C 0.03 1.61 5.14 85.24 0.44 2.05 16 23 N -0.83 -44.22 10.97 21.82 0.24 -43.98 16 24 Si 0.98 38.54 29.59 68.60 2.03 40.57 16 25 H -0.27 -10.22 7.11 99.48 0.71 -9.51 16 26 H -0.27 -9.99 7.11 99.48 0.71 -9.28 16 27 H -0.25 -9.51 7.11 99.48 0.71 -8.80 16 28 C -0.22 -10.60 9.74 22.48 0.22 -10.38 16 29 C -0.09 -3.82 9.90 22.13 0.22 -3.60 16 30 O -0.37 -7.74 9.88 -130.44 -1.29 -9.03 16 31 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.04 0.68 7.88 -2.39 -0.02 0.66 16 33 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 36 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 37 H 0.10 0.62 7.85 -2.39 -0.02 0.60 16 38 H 0.11 1.38 8.14 -2.39 -0.02 1.37 16 39 H 0.08 1.18 8.05 -2.39 -0.02 1.16 16 40 H 0.13 2.41 8.13 -2.39 -0.02 2.39 16 41 H 0.12 2.41 8.13 -2.39 -0.02 2.39 16 42 H 0.42 9.36 8.82 -92.71 -0.82 8.54 16 43 H 0.10 4.99 6.26 -2.91 -0.02 4.98 16 44 H 0.10 5.66 6.20 -2.91 -0.02 5.64 16 45 H 0.29 13.96 8.30 -92.71 -0.77 13.19 16 46 H 0.11 4.82 8.06 -2.91 -0.02 4.79 16 47 H 0.14 4.32 8.06 -2.91 -0.02 4.29 16 Total: -1.00 -74.58 395.69 4.54 -70.04 By element: Atomic # 1 Polarization: 32.52 SS G_CDS: 0.18 Total: 32.70 kcal Atomic # 6 Polarization: -24.67 SS G_CDS: 4.74 Total: -19.92 kcal Atomic # 7 Polarization: -64.44 SS G_CDS: -1.37 Total: -65.81 kcal Atomic # 8 Polarization: -56.54 SS G_CDS: -1.05 Total: -57.58 kcal Atomic # 14 Polarization: 38.54 SS G_CDS: 2.03 Total: 40.57 kcal Total: -74.58 4.54 -70.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000757135363.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.622 kcal (2) G-P(sol) polarization free energy of solvation -74.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds