Wall clock time and date at job start Wed Apr 1 2020 04:20:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.47072 * 2 1 4 4 N 1.46502 * 109.46971 * 119.99913 * 2 1 3 5 5 C 1.46756 * 124.34879 * 119.99725 * 4 2 1 6 6 C 1.54483 * 105.47386 * 196.99496 * 5 4 2 7 7 C 1.54787 * 101.69435 * 334.39203 * 6 5 4 8 8 H 1.08993 * 110.42537 * 143.70525 * 7 6 5 9 9 O 1.45204 * 110.61534 * 266.40229 * 7 6 5 10 10 C 1.34226 * 116.99741 * 206.21163 * 9 7 6 11 11 O 1.20823 * 120.00171 * 359.97438 * 10 9 7 12 12 C 1.50702 * 120.00030 * 180.02562 * 10 9 7 13 13 C 1.50693 * 109.47003 * 179.97438 * 12 10 9 14 14 C 1.38327 * 119.96557 * 269.72258 * 13 12 10 15 15 C 1.38288 * 120.13806 * 179.77335 * 14 13 12 16 16 C 1.38121 * 120.06662 * 0.50283 * 15 14 13 17 17 C 1.38861 * 119.93093 * 359.75414 * 16 15 14 18 18 O 1.35749 * 120.06473 * 179.97438 * 17 16 15 19 19 C 1.34832 * 117.00368 * 354.48493 * 18 17 16 20 20 H 1.07999 * 119.99614 * 5.06553 * 19 18 17 21 21 C 1.38656 * 120.00113 * 185.05692 * 19 18 17 22 22 N 1.31556 * 119.99783 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 119.99848 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47235 * 60.00643 * 23 21 19 25 25 H 1.48503 * 109.46801 * 180.02562 * 23 21 19 26 26 H 1.48496 * 109.47211 * 300.00246 * 23 21 19 27 27 C 1.38083 * 119.96643 * 90.00548 * 13 12 10 28 28 C 1.34427 * 124.34925 * 299.97453 * 4 2 1 29 29 O 1.21276 * 124.94280 * 359.57550 * 28 4 2 30 30 H 1.09006 * 109.47140 * 300.00080 * 1 2 3 31 31 H 1.09003 * 109.47264 * 59.99711 * 1 2 3 32 32 H 1.08990 * 109.47224 * 180.02562 * 1 2 3 33 33 H 1.08991 * 109.47185 * 239.99856 * 2 1 3 34 34 H 1.09003 * 109.47100 * 179.97438 * 3 2 1 35 35 H 1.09000 * 109.47061 * 299.99808 * 3 2 1 36 36 H 1.09006 * 109.47204 * 59.99959 * 3 2 1 37 37 H 1.09002 * 110.24894 * 315.99569 * 5 4 2 38 38 H 1.08999 * 110.24411 * 77.90816 * 5 4 2 39 39 H 1.08993 * 110.96858 * 92.70289 * 6 5 4 40 40 H 1.09000 * 110.96975 * 216.43075 * 6 5 4 41 41 H 1.08995 * 109.47119 * 300.00117 * 12 10 9 42 42 H 1.09001 * 109.46966 * 59.99544 * 12 10 9 43 43 H 1.07996 * 119.93169 * 359.97438 * 14 13 12 44 44 H 1.07998 * 119.96207 * 180.25837 * 15 14 13 45 45 H 1.08004 * 120.03248 * 179.72765 * 16 15 14 46 46 H 0.97007 * 119.99895 * 179.97438 * 22 21 19 47 47 H 1.07993 * 120.03609 * 359.97438 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.8655 -1.8888 1.1728 6 6 2.7612 -2.4950 2.5899 7 6 2.4091 -1.2495 3.4388 8 1 1.7160 -1.5165 4.2365 9 8 3.6115 -0.6488 3.9883 10 6 3.4773 0.0538 5.1241 11 8 2.3911 0.1637 5.6417 12 6 4.6812 0.7066 5.7530 13 6 4.2629 1.4282 7.0081 14 6 3.8721 2.7536 6.9454 15 6 3.4831 3.4179 8.0943 16 6 3.4938 2.7622 9.3099 17 6 3.8907 1.4333 9.3769 18 8 3.9027 0.7864 10.5703 19 6 3.6284 1.5207 11.6674 20 1 3.3325 2.5543 11.5653 21 6 3.7262 0.9487 12.9267 22 7 4.0870 -0.3103 13.0511 23 14 3.3469 1.9662 14.4466 24 1 1.9448 2.4508 14.3807 25 1 3.5251 1.1288 15.6600 26 1 4.2699 3.1279 14.5076 27 6 4.2759 0.7673 8.2205 28 6 1.7484 -0.3080 2.4563 29 8 1.0771 0.6550 2.7610 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.8934 -0.5138 -0.8899 34 1 3.1301 1.4425 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 2.4964 -2.5973 0.4313 38 1 3.8977 -1.6166 0.9526 39 1 1.9679 -3.2409 2.6376 40 1 3.7143 -2.9214 2.9028 41 1 5.4199 -0.0556 6.0006 42 1 5.1156 1.4194 5.0521 43 1 3.8676 3.2698 5.9968 44 1 3.1745 4.4515 8.0414 45 1 3.1941 3.2829 10.2075 46 1 4.1557 -0.7104 13.9321 47 1 4.5851 -0.2663 8.2694 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000760637419.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:20:40 Heat of formation + Delta-G solvation = -138.097088 kcal Electronic energy + Delta-G solvation = -30064.695251 eV Core-core repulsion = 25791.734286 eV Total energy + Delta-G solvation = -4272.960965 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.27041 -41.15668 -40.57797 -38.49528 -37.77255 -37.42277 -35.47008 -34.36922 -33.64328 -31.05744 -30.77216 -29.10019 -28.16816 -28.12846 -27.26856 -24.03225 -23.45140 -23.23383 -22.76331 -21.92833 -20.09622 -19.53690 -19.05520 -18.84550 -18.20750 -17.44382 -17.17602 -16.77584 -16.49501 -16.46572 -16.19673 -16.11247 -15.51727 -15.33918 -15.06002 -14.89985 -14.72780 -14.48816 -14.34132 -14.21073 -14.07939 -13.76183 -13.63706 -13.15776 -13.05402 -12.99282 -12.92433 -12.77769 -12.63135 -12.51172 -12.45297 -12.29962 -12.28041 -12.15130 -12.14105 -12.02831 -11.60163 -11.24241 -10.81072 -10.62181 -9.78824 -9.73361 -9.03529 -8.47890 -6.16541 0.35488 0.69376 0.97952 1.14769 1.33756 1.44826 1.50208 1.80406 2.01254 2.17137 2.81347 3.13193 3.14178 3.33527 3.36078 3.61102 3.75326 3.91586 3.94568 4.04662 4.06091 4.08217 4.25924 4.26349 4.33756 4.43739 4.51401 4.54367 4.62566 4.67130 4.68905 4.78277 4.82059 4.85597 4.89093 4.97466 5.04122 5.10352 5.19047 5.22881 5.26212 5.29525 5.58012 5.63448 5.66481 5.68967 6.00672 6.00931 6.16399 6.65760 6.96289 6.99596 7.76198 8.75128 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.021943 B = 0.002052 C = 0.001989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.742399 B =13640.770999 C =14072.632942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.147 3.853 3 C -0.166 4.166 4 N -0.603 5.603 5 C 0.098 3.902 6 C -0.116 4.116 7 C 0.041 3.959 8 H 0.093 0.907 9 O -0.327 6.327 10 C 0.458 3.542 11 O -0.525 6.525 12 C -0.058 4.058 13 C -0.038 4.038 14 C -0.180 4.180 15 C -0.074 4.074 16 C -0.241 4.241 17 C 0.113 3.887 18 O -0.230 6.230 19 C -0.416 4.416 20 H 0.100 0.900 21 C -0.023 4.023 22 N -0.920 5.920 23 Si 1.019 2.981 24 H -0.260 1.260 25 H -0.270 1.270 26 H -0.256 1.256 27 C -0.185 4.185 28 C 0.494 3.506 29 O -0.558 6.558 30 H 0.031 0.969 31 H 0.088 0.912 32 H 0.065 0.935 33 H 0.132 0.868 34 H 0.062 0.938 35 H 0.088 0.912 36 H 0.031 0.969 37 H 0.120 0.880 38 H 0.094 0.906 39 H 0.121 0.879 40 H 0.127 0.873 41 H 0.143 0.857 42 H 0.150 0.850 43 H 0.142 0.858 44 H 0.145 0.855 45 H 0.121 0.879 46 H 0.273 0.727 47 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.113 -3.365 -31.271 31.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.046 3.954 3 C -0.224 4.224 4 N -0.338 5.338 5 C -0.023 4.023 6 C -0.153 4.153 7 C -0.018 4.018 8 H 0.111 0.889 9 O -0.244 6.244 10 C 0.302 3.698 11 O -0.412 6.412 12 C -0.094 4.094 13 C -0.039 4.039 14 C -0.199 4.199 15 C -0.092 4.092 16 C -0.260 4.260 17 C 0.062 3.938 18 O -0.137 6.137 19 C -0.492 4.492 20 H 0.117 0.883 21 C -0.220 4.220 22 N -0.558 5.558 23 Si 0.838 3.162 24 H -0.184 1.184 25 H -0.194 1.194 26 H -0.180 1.180 27 C -0.205 4.205 28 C 0.280 3.720 29 O -0.436 6.436 30 H 0.051 0.949 31 H 0.107 0.893 32 H 0.084 0.916 33 H 0.150 0.850 34 H 0.081 0.919 35 H 0.107 0.893 36 H 0.050 0.950 37 H 0.138 0.862 38 H 0.113 0.887 39 H 0.139 0.861 40 H 0.145 0.855 41 H 0.160 0.840 42 H 0.168 0.832 43 H 0.160 0.840 44 H 0.163 0.837 45 H 0.138 0.862 46 H 0.082 0.918 47 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 0.481 -3.208 -30.856 31.026 hybrid contribution -0.738 0.440 1.476 1.708 sum -0.257 -2.768 -29.380 29.511 Atomic orbital electron populations 1.22169 0.95123 1.02616 1.02486 1.21246 0.94236 0.93172 0.86754 1.22166 1.01570 0.96260 1.02448 1.48627 1.50062 1.30047 1.05041 1.22512 0.96001 0.85611 0.98133 1.22944 1.07038 0.93174 0.92167 1.23648 0.87172 0.94887 0.96088 0.88949 1.86590 1.36118 1.62775 1.38867 1.24302 0.91453 0.75789 0.78276 1.90760 1.30285 1.57621 1.62491 1.20392 0.93330 1.01638 0.94066 1.19105 0.98325 0.94148 0.92279 1.20972 1.05435 0.94596 0.98849 1.21120 0.96612 1.00196 0.91247 1.21335 1.09756 0.95114 0.99835 1.19845 0.94414 0.92288 0.87212 1.83935 1.79726 1.37631 1.12436 1.21784 1.47931 0.96515 0.82978 0.88260 1.26605 0.96166 0.97744 1.01525 1.70179 1.46338 1.13770 1.25495 0.84643 0.79521 0.77357 0.74649 1.18446 1.19401 1.17979 1.20229 1.09105 1.00276 0.90847 1.21256 0.80291 0.84968 0.85487 1.90722 1.40810 1.29844 1.82272 0.94944 0.89342 0.91594 0.85032 0.91906 0.89301 0.94978 0.86178 0.88736 0.86062 0.85485 0.83950 0.83204 0.84034 0.83711 0.86157 0.91785 0.86697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.40 9.20 71.98 0.66 -1.74 16 2 C 0.15 1.83 3.47 44.99 0.16 1.98 16 3 C -0.17 -2.54 9.20 71.98 0.66 -1.88 16 4 N -0.60 -9.42 2.83 -794.05 -2.25 -11.67 16 5 C 0.10 0.65 7.30 86.83 0.63 1.29 16 6 C -0.12 -1.07 6.94 31.71 0.22 -0.85 16 7 C 0.04 0.92 3.21 30.64 0.10 1.01 16 8 H 0.09 2.54 7.26 -2.39 -0.02 2.52 16 9 O -0.33 -7.93 9.96 -51.38 -0.51 -8.44 16 10 C 0.46 14.15 7.94 71.24 0.57 14.72 16 11 O -0.52 -21.72 15.30 21.97 0.34 -21.38 16 12 C -0.06 -1.47 5.94 29.10 0.17 -1.29 16 13 C -0.04 -1.39 4.37 -19.88 -0.09 -1.47 16 14 C -0.18 -6.32 9.70 22.30 0.22 -6.11 16 15 C -0.07 -2.81 10.04 22.25 0.22 -2.59 16 16 C -0.24 -11.33 9.17 22.39 0.21 -11.13 16 17 C 0.11 5.97 6.65 22.58 0.15 6.12 16 18 O -0.23 -14.47 9.76 -22.75 -0.22 -14.69 16 19 C -0.42 -25.16 9.49 67.92 0.64 -24.52 16 20 H 0.10 5.54 5.20 -2.91 -0.02 5.52 16 21 C -0.02 -1.34 5.49 84.83 0.47 -0.88 16 22 N -0.92 -57.69 13.67 21.61 0.30 -57.40 16 23 Si 1.02 44.15 29.55 68.60 2.03 46.17 16 24 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 25 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 26 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 27 C -0.19 -8.39 9.65 22.39 0.22 -8.17 16 28 C 0.49 12.77 7.10 87.90 0.62 13.39 16 29 O -0.56 -20.31 15.12 -3.02 -0.05 -20.35 16 30 H 0.03 0.74 6.80 -2.38 -0.02 0.73 16 31 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.13 0.60 8.07 -2.39 -0.02 0.58 16 34 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.03 0.76 6.77 -2.38 -0.02 0.74 16 37 H 0.12 0.02 8.14 -2.39 -0.02 0.00 16 38 H 0.09 0.41 8.14 -2.39 -0.02 0.39 16 39 H 0.12 0.69 8.14 -2.39 -0.02 0.67 16 40 H 0.13 0.74 8.11 -2.39 -0.02 0.72 16 41 H 0.14 2.85 8.08 -2.39 -0.02 2.83 16 42 H 0.15 2.68 8.08 -2.39 -0.02 2.66 16 43 H 0.14 3.98 8.06 -2.91 -0.02 3.95 16 44 H 0.15 4.42 8.06 -2.91 -0.02 4.40 16 45 H 0.12 5.68 5.64 -2.91 -0.02 5.66 16 46 H 0.27 15.67 8.31 -92.70 -0.77 14.90 16 47 H 0.11 5.06 8.06 -2.91 -0.02 5.03 16 Total: -1.00 -91.62 395.86 6.45 -85.18 By element: Atomic # 1 Polarization: 23.72 SS G_CDS: 0.99 Total: 24.71 kcal Atomic # 6 Polarization: -27.94 SS G_CDS: 5.83 Total: -22.12 kcal Atomic # 7 Polarization: -67.12 SS G_CDS: -1.95 Total: -69.07 kcal Atomic # 8 Polarization: -64.43 SS G_CDS: -0.44 Total: -64.87 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.17 kcal Total: -91.62 6.45 -85.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760637419.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.920 kcal (2) G-P(sol) polarization free energy of solvation -91.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds