Wall clock time and date at job start Wed Apr 1 2020 05:12:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50699 * 109.46866 * 2 1 4 4 O 1.21226 * 120.00285 * 359.97438 * 3 2 1 5 5 C 1.47411 * 120.00038 * 180.02562 * 3 2 1 6 6 C 1.39800 * 120.01866 * 359.71876 * 5 3 2 7 7 C 1.37773 * 119.97176 * 179.81441 * 6 5 3 8 8 C 1.39613 * 120.02315 * 0.44719 * 7 6 5 9 9 C 1.47968 * 119.97590 * 179.76842 * 8 7 6 10 10 O 1.21429 * 119.99944 * 180.02562 * 9 8 7 11 11 O 1.34689 * 119.99896 * 0.02562 * 9 8 7 12 12 C 1.45202 * 116.99766 * 180.02562 * 11 9 8 13 13 C 1.50700 * 109.46636 * 180.02562 * 12 11 9 14 14 O 1.21278 * 120.00607 * 359.97438 * 13 12 11 15 15 N 1.34783 * 119.99477 * 179.97438 * 13 12 11 16 16 C 1.46498 * 120.00203 * 359.97438 * 15 13 12 17 17 C 1.52999 * 109.46834 * 90.00509 * 16 15 13 18 18 C 1.46500 * 119.99920 * 180.02562 * 15 13 12 19 19 C 1.50698 * 109.47489 * 89.99296 * 18 15 13 20 20 H 1.08000 * 119.99984 * 0.02562 * 19 18 15 21 21 C 1.37879 * 119.99958 * 179.97438 * 19 18 15 22 22 N 1.31510 * 120.00125 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99864 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47003 * 60.00224 * 23 21 19 25 25 H 1.48500 * 109.46979 * 179.97438 * 23 21 19 26 26 H 1.48495 * 109.47099 * 300.00275 * 23 21 19 27 27 C 1.39601 * 120.04680 * 359.78542 * 8 7 6 28 28 C 1.37772 * 120.02517 * 0.02562 * 27 8 7 29 29 H 1.09000 * 109.47050 * 299.99952 * 1 2 3 30 30 H 1.09001 * 109.46801 * 60.00064 * 1 2 3 31 31 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.46955 * 120.00219 * 2 1 3 33 33 H 1.09000 * 109.47050 * 240.00048 * 2 1 3 34 34 H 1.07994 * 120.01311 * 0.02567 * 6 5 3 35 35 H 1.08003 * 119.98770 * 180.18935 * 7 6 5 36 36 H 1.08998 * 109.46492 * 299.99258 * 12 11 9 37 37 H 1.08995 * 109.47445 * 60.00085 * 12 11 9 38 38 H 1.08995 * 109.47398 * 210.00518 * 16 15 13 39 39 H 1.09005 * 109.47099 * 330.00731 * 16 15 13 40 40 H 1.08993 * 109.47399 * 60.00037 * 17 16 15 41 41 H 1.09003 * 109.47107 * 180.02562 * 17 16 15 42 42 H 1.09004 * 109.47028 * 299.99600 * 17 16 15 43 43 H 1.09000 * 109.46945 * 209.99850 * 18 15 13 44 44 H 1.09005 * 109.47103 * 329.99175 * 18 15 13 45 45 H 0.96996 * 120.00463 * 179.97438 * 22 21 19 46 46 H 1.08000 * 119.99033 * 179.97438 * 27 8 7 47 47 H 1.08002 * 120.01524 * 179.97438 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2446 2.3422 -0.0005 5 6 3.4816 1.6903 -0.0006 6 6 4.3905 0.6280 0.0048 7 6 5.7448 0.8809 0.0004 8 6 6.2096 2.1974 0.0000 9 6 7.6643 2.4679 0.0005 10 8 8.0691 3.6127 0.0006 11 8 8.5396 1.4441 0.0007 12 6 9.9513 1.7839 0.0018 13 6 10.7720 0.5200 0.0013 14 8 10.2215 -0.5607 0.0007 15 7 12.1180 0.5906 0.0016 16 6 12.7831 1.8959 0.0017 17 6 13.0144 2.3502 1.4443 18 6 12.9160 -0.6380 0.0006 19 6 13.1897 -1.0582 -1.4205 20 1 12.8078 -0.4687 -2.2410 21 6 13.9285 -2.1945 -1.6733 22 7 14.3939 -2.9121 -0.6743 23 14 14.2684 -2.7149 -3.4349 24 1 15.0155 -1.6385 -4.1336 25 1 15.0782 -3.9597 -3.4358 26 1 12.9822 -2.9599 -4.1355 27 6 5.3028 3.2588 -0.0005 28 6 3.9481 3.0082 0.0000 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 0.8899 33 1 1.8934 -0.5138 -0.8900 34 1 4.0311 -0.3904 0.0090 35 1 6.4472 0.0605 0.0015 36 1 10.1848 2.3686 -0.8880 37 1 10.1838 2.3682 0.8920 38 1 13.7410 1.8157 -0.5120 39 1 12.1550 2.6237 -0.5121 40 1 13.6423 1.6224 1.9581 41 1 13.5088 3.3216 1.4445 42 1 12.0563 2.4305 1.9580 43 1 13.8602 -0.4584 0.5147 44 1 12.3674 -1.4280 0.5137 45 1 14.9133 -3.7117 -0.8520 46 1 5.6633 4.2769 -0.0004 47 1 3.2467 3.8295 0.0000 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000761507768.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:12:22 Heat of formation + Delta-G solvation = -133.989711 kcal Electronic energy + Delta-G solvation = -29151.309773 eV Core-core repulsion = 24878.526917 eV Total energy + Delta-G solvation = -4272.782856 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.94461 -40.26591 -39.10849 -38.34621 -36.47057 -35.36026 -33.52582 -32.88633 -32.07291 -31.42802 -30.22403 -29.23634 -26.92176 -26.18042 -24.20218 -23.12218 -22.77410 -22.65673 -21.44810 -19.98761 -18.86917 -18.33622 -17.46123 -16.96674 -16.72939 -16.42514 -16.09767 -15.95048 -15.91551 -15.44854 -14.99739 -14.63687 -14.57589 -14.33484 -13.97492 -13.80545 -13.62086 -13.45941 -13.25493 -12.95252 -12.72282 -12.67288 -12.52559 -12.20836 -12.16979 -12.09362 -11.68550 -11.61694 -11.51627 -11.27388 -11.00033 -10.93370 -10.82345 -10.66251 -10.56906 -10.18607 -10.16584 -9.71993 -9.52580 -9.47639 -9.06667 -8.47992 -7.80774 -6.09271 -4.14396 -0.17573 0.91284 1.60565 2.27198 2.43518 3.18291 3.29271 3.33742 3.37222 3.39321 3.45186 3.77558 4.27904 4.38097 4.43023 4.49038 4.53884 4.65636 4.75048 4.79842 4.83756 4.93138 5.06379 5.14327 5.17849 5.25297 5.28348 5.31985 5.39298 5.47880 5.54274 5.56463 5.68837 5.72931 5.76151 5.82939 5.88748 5.95951 6.15189 6.19847 6.30581 6.40801 6.94629 7.03546 7.34737 7.41414 7.53109 7.86344 8.16250 8.24023 8.78929 8.94022 9.50660 10.98809 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.013563 B = 0.002037 C = 0.001843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2064.018028 B =13741.691834 C =15187.090740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.172 4.172 3 C 0.395 3.605 4 O -0.447 6.447 5 C -0.142 4.142 6 C -0.086 4.086 7 C -0.070 4.070 8 C -0.090 4.090 9 C 0.504 3.496 10 O -0.503 6.503 11 O -0.322 6.322 12 C 0.050 3.950 13 C 0.507 3.493 14 O -0.519 6.519 15 N -0.591 5.591 16 C 0.101 3.899 17 C -0.170 4.170 18 C 0.248 3.752 19 C -0.530 4.530 20 H 0.057 0.943 21 C 0.062 3.938 22 N -0.894 5.894 23 Si 0.899 3.101 24 H -0.277 1.277 25 H -0.286 1.286 26 H -0.276 1.276 27 C -0.068 4.068 28 C -0.077 4.077 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.103 0.897 33 H 0.103 0.897 34 H 0.143 0.857 35 H 0.153 0.847 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.088 0.912 39 H 0.064 0.936 40 H 0.063 0.937 41 H 0.062 0.938 42 H 0.050 0.950 43 H 0.036 0.964 44 H 0.045 0.955 45 H 0.264 0.736 46 H 0.145 0.855 47 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.267 10.504 3.450 23.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.209 4.209 3 C 0.272 3.728 4 O -0.322 6.322 5 C -0.143 4.143 6 C -0.104 4.104 7 C -0.088 4.088 8 C -0.091 4.091 9 C 0.349 3.651 10 O -0.392 6.392 11 O -0.237 6.237 12 C -0.027 4.027 13 C 0.292 3.708 14 O -0.395 6.395 15 N -0.325 5.325 16 C -0.023 4.023 17 C -0.229 4.229 18 C 0.130 3.870 19 C -0.568 4.568 20 H 0.076 0.924 21 C -0.141 4.141 22 N -0.533 5.533 23 Si 0.727 3.273 24 H -0.202 1.202 25 H -0.211 1.211 26 H -0.201 1.201 27 C -0.086 4.086 28 C -0.095 4.095 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.121 0.879 33 H 0.121 0.879 34 H 0.161 0.839 35 H 0.171 0.829 36 H 0.115 0.885 37 H 0.115 0.885 38 H 0.106 0.894 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.081 0.919 42 H 0.069 0.931 43 H 0.054 0.946 44 H 0.063 0.937 45 H 0.074 0.926 46 H 0.163 0.837 47 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -20.689 10.543 3.497 23.482 hybrid contribution 0.679 -0.175 -0.986 1.210 sum -20.010 10.367 2.511 22.676 Atomic orbital electron populations 1.21605 0.93442 1.02069 1.03099 1.22023 0.98545 0.95288 1.05088 1.22668 0.87527 0.91551 0.71040 1.90521 1.58227 1.47841 1.35581 1.20814 0.95310 0.94521 1.03652 1.21477 0.92415 0.99197 0.97301 1.21667 0.96228 0.96423 0.94511 1.19375 0.89414 0.95027 1.05278 1.21249 0.87594 0.83207 0.73088 1.90826 1.80194 1.22559 1.45666 1.86585 1.17295 1.36598 1.83215 1.23034 0.77219 0.98018 1.04447 1.19668 0.83097 0.89255 0.78799 1.90711 1.70680 1.29359 1.48749 1.48213 1.04378 1.08737 1.71124 1.21520 0.99469 0.84684 0.96631 1.22234 1.01799 1.01371 0.97483 1.19335 0.89854 0.80196 0.97648 1.21381 1.33463 1.09805 0.92186 0.92438 1.24932 0.95589 0.96023 0.97509 1.69913 1.35994 1.16509 1.30836 0.86543 0.78332 0.77900 0.84562 1.20235 1.21149 1.20145 1.21264 0.92022 0.99409 0.95896 1.21349 0.95157 0.96433 0.96538 0.92084 0.92083 0.91795 0.87916 0.87901 0.83936 0.82886 0.88457 0.88525 0.89359 0.91735 0.91754 0.91862 0.93139 0.94603 0.93682 0.92587 0.83716 0.83957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.82 9.20 37.16 0.34 -0.48 16 2 C -0.17 -0.89 5.03 -27.88 -0.14 -1.03 16 3 C 0.39 3.21 7.12 -30.58 -0.22 2.99 16 4 O -0.45 -4.92 15.96 5.60 0.09 -4.83 16 5 C -0.14 -1.19 5.87 -104.99 -0.62 -1.81 16 6 C -0.09 -0.66 9.46 -39.17 -0.37 -1.03 16 7 C -0.07 -0.69 9.60 -39.24 -0.38 -1.07 16 8 C -0.09 -1.02 5.88 -104.89 -0.62 -1.63 16 9 C 0.50 7.02 7.90 34.72 0.27 7.29 16 10 O -0.50 -7.63 16.12 -19.21 -0.31 -7.94 16 11 O -0.32 -5.09 8.99 -47.14 -0.42 -5.51 16 12 C 0.05 0.78 4.51 36.01 0.16 0.94 16 13 C 0.51 10.32 7.75 -10.98 -0.09 10.24 16 14 O -0.52 -12.83 16.08 -14.10 -0.23 -13.05 16 15 N -0.59 -11.99 2.46 -175.06 -0.43 -12.42 16 16 C 0.10 1.54 5.93 -4.04 -0.02 1.51 16 17 C -0.17 -2.18 10.24 37.16 0.38 -1.80 16 18 C 0.25 6.26 5.16 -5.19 -0.03 6.23 16 19 C -0.53 -14.62 9.39 -34.44 -0.32 -14.95 16 20 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 21 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 22 N -0.89 -26.00 13.29 55.43 0.74 -25.26 16 23 Si 0.90 21.47 29.54 -169.99 -5.02 16.45 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 25 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 26 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 27 C -0.07 -0.66 9.58 -39.24 -0.38 -1.04 16 28 C -0.08 -0.68 9.58 -39.17 -0.38 -1.06 16 29 H 0.06 0.39 8.10 -51.93 -0.42 -0.03 16 30 H 0.06 0.39 8.10 -51.93 -0.42 -0.03 16 31 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 32 H 0.10 0.37 8.08 -51.93 -0.42 -0.05 16 33 H 0.10 0.38 8.09 -51.93 -0.42 -0.04 16 34 H 0.14 0.67 7.03 -52.49 -0.37 0.30 16 35 H 0.15 1.57 7.60 -52.48 -0.40 1.17 16 36 H 0.10 1.36 7.39 -51.93 -0.38 0.98 16 37 H 0.10 1.30 7.18 -51.93 -0.37 0.93 16 38 H 0.09 1.39 8.07 -51.93 -0.42 0.97 16 39 H 0.06 0.82 6.44 -51.93 -0.33 0.49 16 40 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.05 0.62 7.22 -51.93 -0.37 0.24 16 43 H 0.04 0.91 8.07 -51.93 -0.42 0.49 16 44 H 0.05 1.28 7.42 -51.93 -0.39 0.90 16 45 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 46 H 0.15 1.30 7.64 -52.49 -0.40 0.90 16 47 H 0.14 1.13 7.64 -52.49 -0.40 0.73 16 LS Contribution 406.02 15.07 6.12 6.12 Total: -1.00 -34.72 406.02 -8.71 -43.43 By element: Atomic # 1 Polarization: 4.81 SS G_CDS: -6.75 Total: -1.95 kcal Atomic # 6 Polarization: 7.46 SS G_CDS: -2.49 Total: 4.97 kcal Atomic # 7 Polarization: -37.99 SS G_CDS: 0.31 Total: -37.68 kcal Atomic # 8 Polarization: -30.46 SS G_CDS: -0.87 Total: -31.33 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -34.72 -8.71 -43.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000761507768.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.563 kcal (2) G-P(sol) polarization free energy of solvation -34.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds