Wall clock time and date at job start Wed Apr 1 2020 05:12:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50699 * 109.46866 * 2 1 4 4 O 1.21226 * 120.00285 * 359.97438 * 3 2 1 5 5 C 1.47411 * 120.00038 * 180.02562 * 3 2 1 6 6 C 1.39800 * 120.01866 * 359.71876 * 5 3 2 7 7 C 1.37773 * 119.97176 * 179.81441 * 6 5 3 8 8 C 1.39613 * 120.02315 * 0.44719 * 7 6 5 9 9 C 1.47968 * 119.97590 * 179.76842 * 8 7 6 10 10 O 1.21429 * 119.99944 * 180.02562 * 9 8 7 11 11 O 1.34689 * 119.99896 * 0.02562 * 9 8 7 12 12 C 1.45202 * 116.99766 * 180.02562 * 11 9 8 13 13 C 1.50700 * 109.46636 * 180.02562 * 12 11 9 14 14 O 1.21278 * 120.00607 * 359.97438 * 13 12 11 15 15 N 1.34783 * 119.99477 * 179.97438 * 13 12 11 16 16 C 1.46498 * 120.00203 * 359.97438 * 15 13 12 17 17 C 1.52999 * 109.46834 * 90.00509 * 16 15 13 18 18 C 1.46500 * 119.99920 * 180.02562 * 15 13 12 19 19 C 1.50698 * 109.47489 * 89.99296 * 18 15 13 20 20 H 1.08000 * 119.99984 * 0.02562 * 19 18 15 21 21 C 1.37879 * 119.99958 * 179.97438 * 19 18 15 22 22 N 1.31510 * 120.00125 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99864 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47003 * 60.00224 * 23 21 19 25 25 H 1.48500 * 109.46979 * 179.97438 * 23 21 19 26 26 H 1.48495 * 109.47099 * 300.00275 * 23 21 19 27 27 C 1.39601 * 120.04680 * 359.78542 * 8 7 6 28 28 C 1.37772 * 120.02517 * 0.02562 * 27 8 7 29 29 H 1.09000 * 109.47050 * 299.99952 * 1 2 3 30 30 H 1.09001 * 109.46801 * 60.00064 * 1 2 3 31 31 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.46955 * 120.00219 * 2 1 3 33 33 H 1.09000 * 109.47050 * 240.00048 * 2 1 3 34 34 H 1.07994 * 120.01311 * 0.02567 * 6 5 3 35 35 H 1.08003 * 119.98770 * 180.18935 * 7 6 5 36 36 H 1.08998 * 109.46492 * 299.99258 * 12 11 9 37 37 H 1.08995 * 109.47445 * 60.00085 * 12 11 9 38 38 H 1.08995 * 109.47398 * 210.00518 * 16 15 13 39 39 H 1.09005 * 109.47099 * 330.00731 * 16 15 13 40 40 H 1.08993 * 109.47399 * 60.00037 * 17 16 15 41 41 H 1.09003 * 109.47107 * 180.02562 * 17 16 15 42 42 H 1.09004 * 109.47028 * 299.99600 * 17 16 15 43 43 H 1.09000 * 109.46945 * 209.99850 * 18 15 13 44 44 H 1.09005 * 109.47103 * 329.99175 * 18 15 13 45 45 H 0.96996 * 120.00463 * 179.97438 * 22 21 19 46 46 H 1.08000 * 119.99033 * 179.97438 * 27 8 7 47 47 H 1.08002 * 120.01524 * 179.97438 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2446 2.3422 -0.0005 5 6 3.4816 1.6903 -0.0006 6 6 4.3905 0.6280 0.0048 7 6 5.7448 0.8809 0.0004 8 6 6.2096 2.1974 0.0000 9 6 7.6643 2.4679 0.0005 10 8 8.0691 3.6127 0.0006 11 8 8.5396 1.4441 0.0007 12 6 9.9513 1.7839 0.0018 13 6 10.7720 0.5200 0.0013 14 8 10.2215 -0.5607 0.0007 15 7 12.1180 0.5906 0.0016 16 6 12.7831 1.8959 0.0017 17 6 13.0144 2.3502 1.4443 18 6 12.9160 -0.6380 0.0006 19 6 13.1897 -1.0582 -1.4205 20 1 12.8078 -0.4687 -2.2410 21 6 13.9285 -2.1945 -1.6733 22 7 14.3939 -2.9121 -0.6743 23 14 14.2684 -2.7149 -3.4349 24 1 15.0155 -1.6385 -4.1336 25 1 15.0782 -3.9597 -3.4358 26 1 12.9822 -2.9599 -4.1355 27 6 5.3028 3.2588 -0.0005 28 6 3.9481 3.0082 0.0000 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 0.8899 33 1 1.8934 -0.5138 -0.8900 34 1 4.0311 -0.3904 0.0090 35 1 6.4472 0.0605 0.0015 36 1 10.1848 2.3686 -0.8880 37 1 10.1838 2.3682 0.8920 38 1 13.7410 1.8157 -0.5120 39 1 12.1550 2.6237 -0.5121 40 1 13.6423 1.6224 1.9581 41 1 13.5088 3.3216 1.4445 42 1 12.0563 2.4305 1.9580 43 1 13.8602 -0.4584 0.5147 44 1 12.3674 -1.4280 0.5137 45 1 14.9133 -3.7117 -0.8520 46 1 5.6633 4.2769 -0.0004 47 1 3.2467 3.8295 0.0000 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000761507768.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:12:22 Heat of formation + Delta-G solvation = -152.814499 kcal Electronic energy + Delta-G solvation = -29152.126077 eV Core-core repulsion = 24878.526917 eV Total energy + Delta-G solvation = -4273.599160 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.96912 -41.11548 -40.55561 -39.18738 -37.66352 -36.97432 -34.93303 -34.05910 -32.83555 -32.11389 -31.73026 -30.62983 -28.52122 -27.10886 -25.15284 -24.63460 -24.06852 -23.47427 -22.40946 -20.64168 -20.31863 -19.41182 -18.63466 -18.43173 -17.98034 -17.82415 -17.48036 -17.07832 -16.59307 -16.46583 -16.27029 -16.05334 -15.67848 -15.27346 -14.92297 -14.77995 -14.65547 -14.58238 -14.33250 -14.12268 -13.99242 -13.62262 -13.57011 -13.45675 -13.27437 -13.13267 -13.08431 -12.66749 -12.65634 -12.51733 -12.22755 -12.19243 -12.07010 -12.01192 -11.90732 -11.81523 -11.73172 -10.81085 -10.73613 -10.63572 -10.28707 -10.17854 -9.54293 -8.22417 -6.36799 -0.94600 0.21418 0.81394 1.12159 1.38218 1.41882 1.49092 1.57251 1.62618 2.29509 2.43500 2.64787 2.86290 3.07609 3.38844 3.44636 3.63177 3.80136 3.88235 3.95564 4.00074 4.12549 4.14808 4.15106 4.29518 4.34089 4.38061 4.58896 4.59083 4.75617 4.85707 4.89565 4.94812 4.99229 5.03017 5.03883 5.07340 5.09156 5.15597 5.19761 5.22463 5.34416 5.36316 5.54416 5.60193 5.79752 6.04749 6.41487 6.42919 6.61898 6.72156 7.20960 7.36864 8.84698 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.013563 B = 0.002037 C = 0.001843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2064.018028 B =13741.691834 C =15187.090740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.170 4.170 3 C 0.398 3.602 4 O -0.481 6.481 5 C -0.142 4.142 6 C -0.070 4.070 7 C -0.077 4.077 8 C -0.108 4.108 9 C 0.507 3.493 10 O -0.519 6.519 11 O -0.339 6.339 12 C 0.062 3.938 13 C 0.500 3.500 14 O -0.574 6.574 15 N -0.594 5.594 16 C 0.093 3.907 17 C -0.163 4.163 18 C 0.263 3.737 19 C -0.545 4.545 20 H 0.055 0.945 21 C 0.009 3.991 22 N -0.926 5.926 23 Si 0.967 3.033 24 H -0.261 1.261 25 H -0.279 1.279 26 H -0.277 1.277 27 C -0.067 4.067 28 C -0.080 4.080 29 H 0.048 0.952 30 H 0.048 0.952 31 H 0.081 0.919 32 H 0.126 0.874 33 H 0.126 0.874 34 H 0.178 0.822 35 H 0.146 0.854 36 H 0.119 0.881 37 H 0.124 0.876 38 H 0.081 0.919 39 H 0.098 0.902 40 H 0.044 0.956 41 H 0.097 0.903 42 H 0.057 0.943 43 H 0.029 0.971 44 H 0.001 0.999 45 H 0.268 0.732 46 H 0.149 0.851 47 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.167 11.273 2.611 24.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.207 4.207 3 C 0.277 3.723 4 O -0.358 6.358 5 C -0.143 4.143 6 C -0.088 4.088 7 C -0.095 4.095 8 C -0.110 4.110 9 C 0.353 3.647 10 O -0.409 6.409 11 O -0.254 6.254 12 C -0.015 4.015 13 C 0.288 3.712 14 O -0.454 6.454 15 N -0.327 5.327 16 C -0.028 4.028 17 C -0.222 4.222 18 C 0.142 3.858 19 C -0.584 4.584 20 H 0.073 0.927 21 C -0.191 4.191 22 N -0.566 5.566 23 Si 0.791 3.209 24 H -0.186 1.186 25 H -0.204 1.204 26 H -0.203 1.203 27 C -0.085 4.085 28 C -0.098 4.098 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.100 0.900 32 H 0.144 0.856 33 H 0.143 0.857 34 H 0.195 0.805 35 H 0.164 0.836 36 H 0.137 0.863 37 H 0.141 0.859 38 H 0.100 0.900 39 H 0.116 0.884 40 H 0.063 0.937 41 H 0.115 0.885 42 H 0.076 0.924 43 H 0.047 0.953 44 H 0.019 0.981 45 H 0.076 0.924 46 H 0.167 0.833 47 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -21.571 11.364 2.663 24.527 hybrid contribution 0.897 -0.399 -0.681 1.194 sum -20.674 10.965 1.983 23.486 Atomic orbital electron populations 1.21623 0.93987 1.02852 1.01933 1.22124 0.98059 0.93304 1.07172 1.23098 0.86947 0.92632 0.69603 1.90521 1.58814 1.49135 1.37362 1.21026 0.95888 0.94511 1.02909 1.21754 0.91095 1.00666 0.95286 1.21701 0.97228 0.95632 0.94966 1.19378 0.88001 0.96171 1.07404 1.21641 0.88186 0.82581 0.72291 1.90805 1.80525 1.22870 1.46684 1.86586 1.17405 1.37780 1.83653 1.22890 0.76922 0.95014 1.06678 1.20466 0.83149 0.90319 0.77311 1.90674 1.71729 1.31838 1.51171 1.48197 1.04630 1.09162 1.70687 1.21867 0.99439 0.82733 0.98809 1.22177 1.02227 1.02406 0.95345 1.18790 0.89389 0.81455 0.96135 1.21671 1.33476 1.10195 0.93011 0.92705 1.25839 0.95323 0.96014 1.01900 1.70032 1.36575 1.16946 1.33045 0.85483 0.78145 0.78025 0.79262 1.18571 1.20413 1.20280 1.21292 0.92123 0.99257 0.95833 1.21490 0.94846 0.97220 0.96244 0.93268 0.93327 0.89988 0.85575 0.85654 0.80489 0.83591 0.86312 0.85856 0.90025 0.88384 0.93672 0.88469 0.92380 0.95302 0.98075 0.92361 0.83333 0.83328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.20 71.98 0.66 -0.73 16 2 C -0.17 -1.25 5.03 29.85 0.15 -1.10 16 3 C 0.40 5.73 7.12 28.10 0.20 5.93 16 4 O -0.48 -10.21 15.96 -2.86 -0.05 -10.25 16 5 C -0.14 -2.11 5.87 -20.10 -0.12 -2.23 16 6 C -0.07 -0.91 9.46 22.54 0.21 -0.69 16 7 C -0.08 -1.44 9.60 22.49 0.22 -1.22 16 8 C -0.11 -2.38 5.88 -20.04 -0.12 -2.49 16 9 C 0.51 13.76 7.90 70.40 0.56 14.31 16 10 O -0.52 -15.10 16.12 20.06 0.32 -14.77 16 11 O -0.34 -10.56 8.99 -49.60 -0.45 -11.01 16 12 C 0.06 1.84 4.51 71.24 0.32 2.16 16 13 C 0.50 20.60 7.75 87.66 0.68 21.28 16 14 O -0.57 -29.51 16.08 15.78 0.25 -29.25 16 15 N -0.59 -24.39 2.46 -826.15 -2.03 -26.42 16 16 C 0.09 2.71 5.93 86.38 0.51 3.23 16 17 C -0.16 -3.87 10.24 71.98 0.74 -3.13 16 18 C 0.26 13.82 5.16 85.63 0.44 14.26 16 19 C -0.54 -30.74 9.39 25.60 0.24 -30.50 16 20 H 0.05 3.05 7.81 -2.91 -0.02 3.02 16 21 C 0.01 0.48 5.46 84.66 0.46 0.94 16 22 N -0.93 -55.08 13.29 21.45 0.28 -54.79 16 23 Si 0.97 44.12 29.54 68.60 2.03 46.15 16 24 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 25 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 26 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 27 C -0.07 -1.25 9.58 22.49 0.22 -1.03 16 28 C -0.08 -1.33 9.58 22.54 0.22 -1.11 16 29 H 0.05 0.58 8.10 -2.39 -0.02 0.56 16 30 H 0.05 0.58 8.10 -2.39 -0.02 0.56 16 31 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.13 0.41 8.08 -2.39 -0.02 0.39 16 33 H 0.13 0.43 8.09 -2.39 -0.02 0.41 16 34 H 0.18 0.98 7.03 -2.91 -0.02 0.96 16 35 H 0.15 2.95 7.60 -2.91 -0.02 2.93 16 36 H 0.12 3.05 7.39 -2.39 -0.02 3.03 16 37 H 0.12 3.03 7.18 -2.39 -0.02 3.01 16 38 H 0.08 2.49 8.07 -2.39 -0.02 2.47 16 39 H 0.10 2.20 6.44 -2.38 -0.02 2.19 16 40 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 42 H 0.06 1.29 7.22 -2.38 -0.02 1.27 16 43 H 0.03 1.53 8.07 -2.39 -0.02 1.51 16 44 H 0.00 0.07 7.42 -2.38 -0.02 0.05 16 45 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16 46 H 0.15 2.57 7.64 -2.91 -0.02 2.55 16 47 H 0.15 2.25 7.64 -2.91 -0.02 2.23 16 Total: -1.00 -78.82 406.02 6.94 -71.89 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: 0.98 Total: 10.60 kcal Atomic # 6 Polarization: 12.28 SS G_CDS: 5.59 Total: 17.86 kcal Atomic # 7 Polarization: -79.46 SS G_CDS: -1.74 Total: -81.21 kcal Atomic # 8 Polarization: -65.37 SS G_CDS: 0.09 Total: -65.29 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Total: -78.82 6.94 -71.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000761507768.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.927 kcal (2) G-P(sol) polarization free energy of solvation -78.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds