Wall clock time and date at job start Wed Apr 1 2020 05:12:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50699 * 109.46866 * 2 1 4 4 O 1.21226 * 120.00285 * 359.97438 * 3 2 1 5 5 C 1.47401 * 120.00104 * 180.02562 * 3 2 1 6 6 C 1.39806 * 120.02116 * 359.71872 * 5 3 2 7 7 C 1.37775 * 119.97520 * 179.71841 * 6 5 3 8 8 C 1.39614 * 120.02188 * 0.56695 * 7 6 5 9 9 C 1.47959 * 119.97580 * 179.73942 * 8 7 6 10 10 O 1.21442 * 120.00250 * 179.97438 * 9 8 7 11 11 O 1.34690 * 119.99881 * 359.97438 * 9 8 7 12 12 C 1.45202 * 116.99823 * 180.02562 * 11 9 8 13 13 H 1.09000 * 109.47509 * 330.00190 * 12 11 9 14 14 C 1.53009 * 109.47156 * 89.99992 * 12 11 9 15 15 C 1.50699 * 109.47010 * 209.99556 * 12 11 9 16 16 O 1.21275 * 120.00150 * 0.02562 * 15 12 11 17 17 N 1.34782 * 119.99961 * 179.97438 * 15 12 11 18 18 C 1.46506 * 119.99858 * 0.02562 * 17 15 12 19 19 C 1.46495 * 120.00169 * 180.02562 * 17 15 12 20 20 C 1.50693 * 109.47656 * 89.99745 * 19 17 15 21 21 H 1.08005 * 119.99965 * 359.97438 * 20 19 17 22 22 C 1.37876 * 120.00251 * 180.02562 * 20 19 17 23 23 N 1.31517 * 119.99842 * 180.02562 * 22 20 19 24 24 Si 1.86798 * 120.00007 * 359.97438 * 22 20 19 25 25 H 1.48495 * 109.47075 * 90.00226 * 24 22 20 26 26 H 1.48497 * 109.47134 * 210.00543 * 24 22 20 27 27 H 1.48501 * 109.46992 * 330.00209 * 24 22 20 28 28 C 1.39608 * 120.04389 * 359.70829 * 8 7 6 29 29 C 1.37762 * 120.02780 * 0.02562 * 28 8 7 30 30 H 1.09000 * 109.47050 * 299.99952 * 1 2 3 31 31 H 1.09001 * 109.46801 * 60.00064 * 1 2 3 32 32 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 33 33 H 1.08993 * 109.46955 * 120.00219 * 2 1 3 34 34 H 1.09000 * 109.47050 * 240.00048 * 2 1 3 35 35 H 1.08003 * 120.01157 * 359.97438 * 6 5 3 36 36 H 1.07998 * 119.98443 * 180.27516 * 7 6 5 37 37 H 1.08991 * 109.46949 * 59.99563 * 14 12 11 38 38 H 1.08999 * 109.46779 * 180.02562 * 14 12 11 39 39 H 1.08999 * 109.46439 * 300.00057 * 14 12 11 40 40 H 1.08995 * 109.47228 * 89.99683 * 18 17 15 41 41 H 1.09000 * 109.46937 * 209.99932 * 18 17 15 42 42 H 1.09003 * 109.47176 * 329.99834 * 18 17 15 43 43 H 1.09003 * 109.47288 * 210.00245 * 19 17 15 44 44 H 1.09001 * 109.46539 * 329.99355 * 19 17 15 45 45 H 0.97001 * 119.99882 * 179.97438 * 23 22 20 46 46 H 1.08004 * 119.98249 * 179.97438 * 28 8 7 47 47 H 1.08002 * 120.01475 * 179.97438 * 29 28 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2446 2.3422 -0.0005 5 6 3.4815 1.6903 -0.0006 6 6 4.3905 0.6280 0.0048 7 6 5.7448 0.8809 -0.0016 8 6 6.2096 2.1974 -0.0015 9 6 7.6643 2.4678 -0.0025 10 8 8.0691 3.6128 -0.0029 11 8 8.5395 1.4441 -0.0031 12 6 9.9512 1.7838 -0.0035 13 1 10.0961 2.7342 -0.5172 14 6 10.4476 1.9029 1.4389 15 6 10.7272 0.7051 -0.7143 16 8 10.1476 -0.2551 -1.1755 17 7 12.0654 0.8080 -0.8384 18 6 12.7655 1.9683 -0.2817 19 6 12.8197 -0.2403 -1.5298 20 6 12.9112 0.0912 -2.9970 21 1 12.4528 0.9924 -3.3766 22 6 13.5791 -0.7566 -3.8550 23 7 13.6593 -0.4670 -5.1354 24 14 14.3713 -2.3158 -3.1986 25 1 13.3922 -3.4307 -3.2568 26 1 15.5571 -2.6545 -4.0257 27 1 14.7943 -2.1014 -1.7913 28 6 5.3027 3.2588 -0.0011 29 6 3.9481 3.0082 -0.0002 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 0.8899 34 1 1.8934 -0.5138 -0.8900 35 1 4.0311 -0.3905 0.0098 36 1 6.4471 0.0604 -0.0019 37 1 10.3027 0.9526 1.9526 38 1 11.5073 2.1583 1.4385 39 1 9.8863 2.6830 1.9530 40 1 13.0601 1.7563 0.7461 41 1 13.6534 2.1775 -0.8783 42 1 12.1040 2.8345 -0.2987 43 1 13.8230 -0.3040 -1.1085 44 1 12.3116 -1.1964 -1.4042 45 1 14.1296 -1.0633 -5.7389 46 1 5.6633 4.2769 -0.0006 47 1 3.2467 3.8295 0.0005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000761518964.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:12:26 Heat of formation + Delta-G solvation = -143.638821 kcal Electronic energy + Delta-G solvation = -29526.344728 eV Core-core repulsion = 25253.143455 eV Total energy + Delta-G solvation = -4273.201272 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.10939 -41.18663 -40.59760 -39.20655 -37.70276 -36.78135 -34.88897 -34.07424 -33.41587 -32.44808 -32.11092 -30.12471 -27.83708 -27.35951 -25.90851 -25.03002 -23.81387 -23.48602 -22.27672 -20.64827 -20.49481 -19.54468 -19.15033 -18.45630 -18.02877 -17.52332 -17.28773 -17.06779 -16.58654 -16.53470 -16.45649 -15.89657 -15.59382 -15.31219 -15.09679 -14.83922 -14.66258 -14.48736 -14.39437 -14.28347 -13.80120 -13.78883 -13.68969 -13.51804 -13.44019 -13.13431 -13.05527 -12.83265 -12.67112 -12.58033 -12.36875 -12.20237 -12.03357 -12.01243 -11.98590 -11.87597 -11.75272 -10.83728 -10.81699 -10.70073 -10.30069 -10.19270 -9.50992 -8.34383 -6.40814 -0.95919 0.20002 0.79737 1.11420 1.34858 1.38872 1.47316 1.53525 1.59115 2.27476 2.31588 2.63418 2.85387 2.99901 3.32765 3.37718 3.61459 3.72729 3.78987 3.81614 3.98047 4.10341 4.13453 4.28905 4.29509 4.33287 4.49305 4.57476 4.60691 4.63073 4.75952 4.78223 4.84641 4.87608 4.90995 5.00525 5.03108 5.07300 5.09113 5.09758 5.15181 5.21293 5.34389 5.42940 5.50699 5.58765 6.19796 6.39116 6.42400 6.52889 6.60921 7.12871 7.26823 8.82580 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.014996 B = 0.002102 C = 0.001943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1866.683411 B =13319.212355 C =14406.352411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.169 4.169 3 C 0.397 3.603 4 O -0.482 6.482 5 C -0.142 4.142 6 C -0.069 4.069 7 C -0.076 4.076 8 C -0.109 4.109 9 C 0.505 3.495 10 O -0.521 6.521 11 O -0.332 6.332 12 C 0.078 3.922 13 H 0.110 0.890 14 C -0.166 4.166 15 C 0.503 3.497 16 O -0.573 6.573 17 N -0.596 5.596 18 C 0.065 3.935 19 C 0.224 3.776 20 C -0.541 4.541 21 H 0.025 0.975 22 C 0.009 3.991 23 N -0.946 5.946 24 Si 0.951 3.049 25 H -0.275 1.275 26 H -0.277 1.277 27 H -0.232 1.232 28 C -0.069 4.069 29 C -0.080 4.080 30 H 0.049 0.951 31 H 0.046 0.954 32 H 0.082 0.918 33 H 0.129 0.871 34 H 0.125 0.875 35 H 0.181 0.819 36 H 0.149 0.851 37 H 0.075 0.925 38 H 0.115 0.885 39 H 0.084 0.916 40 H 0.097 0.903 41 H 0.074 0.926 42 H 0.083 0.917 43 H 0.061 0.939 44 H 0.024 0.976 45 H 0.269 0.731 46 H 0.146 0.854 47 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.799 2.456 18.481 26.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.206 4.206 3 C 0.277 3.723 4 O -0.359 6.359 5 C -0.144 4.144 6 C -0.087 4.087 7 C -0.094 4.094 8 C -0.111 4.111 9 C 0.350 3.650 10 O -0.412 6.412 11 O -0.248 6.248 12 C 0.019 3.981 13 H 0.128 0.872 14 C -0.223 4.223 15 C 0.290 3.710 16 O -0.452 6.452 17 N -0.328 5.328 18 C -0.076 4.076 19 C 0.103 3.897 20 C -0.579 4.579 21 H 0.044 0.956 22 C -0.189 4.189 23 N -0.586 5.586 24 Si 0.773 3.227 25 H -0.201 1.201 26 H -0.202 1.202 27 H -0.155 1.155 28 C -0.088 4.088 29 C -0.098 4.098 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.101 0.899 33 H 0.147 0.853 34 H 0.143 0.857 35 H 0.198 0.802 36 H 0.167 0.833 37 H 0.094 0.906 38 H 0.133 0.867 39 H 0.103 0.897 40 H 0.115 0.885 41 H 0.093 0.907 42 H 0.101 0.899 43 H 0.079 0.921 44 H 0.042 0.958 45 H 0.078 0.922 46 H 0.164 0.836 47 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -19.257 2.720 18.091 26.561 hybrid contribution 0.711 -0.123 -0.824 1.095 sum -18.546 2.597 17.267 25.472 Atomic orbital electron populations 1.21625 0.94002 1.02881 1.01905 1.22124 0.98042 0.93178 1.07231 1.23116 0.86886 0.92708 0.69598 1.90522 1.58812 1.49187 1.37364 1.21043 0.95994 0.94457 1.02857 1.21776 0.91011 1.00707 0.95179 1.21705 0.97288 0.95492 0.94888 1.19393 0.87902 0.96337 1.07428 1.21725 0.88414 0.82804 0.72008 1.90794 1.80467 1.22999 1.46893 1.86622 1.17256 1.37573 1.83335 1.22585 0.77402 0.97358 1.00707 0.87213 1.22425 1.04873 1.04410 0.90590 1.20559 0.83003 0.87332 0.80141 1.90658 1.69424 1.34975 1.50143 1.47791 1.05739 1.24178 1.55068 1.22301 0.98503 0.86829 1.00000 1.19439 0.92233 0.87451 0.90619 1.21554 1.34861 1.08274 0.93252 0.95640 1.25915 0.96434 1.01813 0.94774 1.70062 1.44089 1.39657 1.04757 0.85666 0.78134 0.78482 0.80371 1.20108 1.20190 1.15510 1.21287 0.92255 0.99226 0.95991 1.21480 0.94736 0.97339 0.96291 0.93193 0.93488 0.89904 0.85304 0.85741 0.80201 0.83306 0.90601 0.86680 0.89711 0.88530 0.90702 0.89858 0.92096 0.95782 0.92237 0.83633 0.83410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.20 71.98 0.66 -0.74 16 2 C -0.17 -1.24 5.03 29.85 0.15 -1.09 16 3 C 0.40 5.88 7.12 28.10 0.20 6.08 16 4 O -0.48 -10.50 15.96 -2.86 -0.05 -10.54 16 5 C -0.14 -2.20 5.87 -20.11 -0.12 -2.32 16 6 C -0.07 -0.90 9.46 22.54 0.21 -0.68 16 7 C -0.08 -1.43 9.60 22.49 0.22 -1.22 16 8 C -0.11 -2.55 5.88 -20.04 -0.12 -2.66 16 9 C 0.50 14.65 7.88 70.40 0.55 15.21 16 10 O -0.52 -16.51 15.59 20.02 0.31 -16.19 16 11 O -0.33 -10.62 8.65 -49.61 -0.43 -11.05 16 12 C 0.08 2.40 2.18 29.85 0.07 2.47 16 13 H 0.11 3.37 6.42 -2.39 -0.02 3.36 16 14 C -0.17 -3.52 9.19 71.99 0.66 -2.86 16 15 C 0.50 20.49 7.15 87.66 0.63 21.12 16 16 O -0.57 -28.86 16.08 15.79 0.25 -28.61 16 17 N -0.60 -23.32 2.86 -851.14 -2.43 -25.75 16 18 C 0.07 1.73 8.80 127.77 1.12 2.85 16 19 C 0.22 10.53 4.23 85.63 0.36 10.89 16 20 C -0.54 -31.46 9.94 25.60 0.25 -31.21 16 21 H 0.03 1.67 8.06 -2.91 -0.02 1.65 16 22 C 0.01 0.50 5.47 84.65 0.46 0.97 16 23 N -0.95 -59.55 13.96 21.45 0.30 -59.26 16 24 Si 0.95 43.31 27.47 68.60 1.88 45.19 16 25 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 26 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 27 H -0.23 -9.25 6.54 99.48 0.65 -8.60 16 28 C -0.07 -1.41 9.58 22.49 0.22 -1.19 16 29 C -0.08 -1.43 9.58 22.54 0.22 -1.22 16 30 H 0.05 0.58 8.10 -2.39 -0.02 0.56 16 31 H 0.05 0.58 8.10 -2.39 -0.02 0.56 16 32 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 33 H 0.13 0.33 8.08 -2.39 -0.02 0.31 16 34 H 0.12 0.46 8.09 -2.39 -0.02 0.44 16 35 H 0.18 0.91 7.03 -2.91 -0.02 0.89 16 36 H 0.15 2.90 7.60 -2.91 -0.02 2.88 16 37 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.11 1.92 4.53 -2.39 -0.01 1.91 16 39 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 40 H 0.10 1.77 6.95 -2.39 -0.02 1.76 16 41 H 0.07 2.11 8.07 -2.39 -0.02 2.09 16 42 H 0.08 1.87 6.01 -2.39 -0.01 1.85 16 43 H 0.06 2.54 7.13 -2.39 -0.02 2.53 16 44 H 0.02 1.21 6.85 -2.39 -0.02 1.19 16 45 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 46 H 0.15 2.83 7.64 -2.91 -0.02 2.81 16 47 H 0.15 2.43 7.64 -2.91 -0.02 2.41 16 Total: -1.00 -84.60 396.50 6.53 -78.07 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: 0.94 Total: 13.75 kcal Atomic # 6 Polarization: 8.64 SS G_CDS: 5.75 Total: 14.39 kcal Atomic # 7 Polarization: -82.87 SS G_CDS: -2.13 Total: -85.00 kcal Atomic # 8 Polarization: -66.48 SS G_CDS: 0.09 Total: -66.39 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 1.88 Total: 45.19 kcal Total: -84.60 6.53 -78.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000761518964.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.566 kcal (2) G-P(sol) polarization free energy of solvation -84.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds