Wall clock time and date at job start Wed Apr 1 2020 05:31:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.89818 * 2 1 4 4 O 1.43240 * 109.83027 * 120.93077 * 2 1 3 5 5 C 1.43648 * 109.96601 * 117.80186 * 4 2 1 6 6 C 1.54947 * 105.13822 * 24.43404 * 5 4 2 7 7 C 1.54379 * 109.83378 * 239.06786 * 2 1 3 8 8 H 1.09005 * 110.84578 * 337.32150 * 7 2 1 9 9 C 1.50703 * 111.02517 * 100.85653 * 7 2 1 10 10 O 1.20825 * 119.99515 * 354.39376 * 9 7 2 11 11 O 1.34226 * 120.00013 * 174.38257 * 9 7 2 12 12 C 1.45205 * 116.99689 * 180.02562 * 11 9 7 13 13 C 1.50703 * 109.47003 * 180.02562 * 12 11 9 14 14 O 1.21293 * 120.00021 * 5.12324 * 13 12 11 15 15 N 1.34771 * 120.00295 * 185.13126 * 13 12 11 16 16 C 1.46498 * 120.00403 * 185.21861 * 15 13 12 17 17 C 1.50697 * 109.47361 * 89.99381 * 16 15 13 18 18 H 1.08000 * 120.00027 * 0.02562 * 17 16 15 19 19 C 1.37874 * 120.00341 * 180.02562 * 17 16 15 20 20 N 1.31520 * 119.99517 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 120.00563 * 180.02562 * 19 17 16 22 22 H 1.48508 * 109.46675 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.47346 * 119.99564 * 21 19 17 24 24 H 1.48497 * 109.47370 * 240.00471 * 21 19 17 25 25 C 1.39927 * 119.99887 * 5.21246 * 15 13 12 26 26 C 1.38871 * 120.07192 * 292.47597 * 25 15 13 27 27 C 1.38119 * 119.92954 * 179.67405 * 26 25 15 28 28 C 1.38276 * 120.06714 * 0.62021 * 27 26 25 29 29 C 1.38278 * 120.14592 * 359.67366 * 28 27 26 30 30 C 1.38120 * 120.06947 * 0.02562 * 29 28 27 31 31 H 1.08993 * 109.47521 * 300.52005 * 1 2 3 32 32 H 1.09000 * 109.47100 * 60.51842 * 1 2 3 33 33 H 1.09003 * 109.46932 * 180.51900 * 1 2 3 34 34 H 1.09009 * 110.30477 * 143.34766 * 5 4 2 35 35 H 1.08995 * 110.31171 * 265.50759 * 5 4 2 36 36 H 1.08992 * 111.12502 * 81.47105 * 6 5 4 37 37 H 1.09005 * 111.11920 * 205.59353 * 6 5 4 38 38 H 1.08999 * 109.47220 * 300.00426 * 12 11 9 39 39 H 1.08993 * 109.47005 * 60.00506 * 12 11 9 40 40 H 1.09001 * 109.47206 * 210.00120 * 16 15 13 41 41 H 1.09006 * 109.46855 * 329.99318 * 16 15 13 42 42 H 0.97000 * 119.99710 * 179.97438 * 20 19 17 43 43 H 1.08001 * 120.03213 * 359.96989 * 26 25 15 44 44 H 1.07997 * 119.96536 * 180.33368 * 27 26 25 45 45 H 1.08003 * 119.92904 * 179.70176 * 28 27 26 46 46 H 1.07996 * 119.97189 * 180.02562 * 29 28 27 47 47 H 1.07997 * 120.03845 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9009 1.0249 0.0000 4 8 2.0159 -0.6926 1.1558 5 6 2.7747 -1.8444 0.7545 6 6 3.2730 -1.5221 -0.6768 7 6 2.0537 -0.7465 -1.2457 8 1 1.3012 -1.4349 -1.6303 9 6 2.4864 0.2233 -2.3150 10 8 2.3018 1.4081 -2.1664 11 8 3.0771 -0.2291 -3.4322 12 6 3.4679 0.7620 -4.4188 13 6 4.1094 0.0732 -5.5958 14 8 4.1424 -1.1382 -5.6454 15 7 4.6466 0.8033 -6.5932 16 6 5.1673 0.1377 -7.7898 17 6 4.0683 0.0119 -8.8131 18 1 3.0807 0.3902 -8.5943 19 6 4.3235 -0.5863 -10.0289 20 7 5.5263 -1.0466 -10.2956 21 14 2.9614 -0.7417 -11.2977 22 1 1.7118 -0.1481 -10.7576 23 1 3.3547 -0.0236 -12.5366 24 1 2.7348 -2.1762 -11.6076 25 6 4.7067 2.1972 -6.4858 26 6 3.5380 2.9472 -6.4987 27 6 3.6005 4.3223 -6.3857 28 6 4.8257 4.9533 -6.2728 29 6 5.9916 4.2099 -6.2658 30 6 5.9357 2.8339 -6.3722 31 1 -0.3634 0.5218 0.8852 32 1 -0.3633 0.5058 -0.8946 33 1 -0.3633 -1.0277 0.0093 34 1 3.6209 -1.9924 1.4255 35 1 2.1401 -2.7305 0.7437 36 1 4.1620 -0.8920 -0.6505 37 1 3.4579 -2.4349 -1.2432 38 1 2.5862 1.3081 -4.7542 39 1 4.1786 1.4578 -3.9731 40 1 5.9855 0.7258 -8.2056 41 1 5.5317 -0.8546 -7.5240 42 1 5.7057 -1.4678 -11.1508 43 1 2.5811 2.4553 -6.5921 44 1 2.6916 4.9057 -6.3902 45 1 4.8721 6.0291 -6.1895 46 1 6.9470 4.7055 -6.1771 47 1 6.8465 2.2537 -6.3662 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000771080164.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:31:17 Heat of formation + Delta-G solvation = -131.970154 kcal Electronic energy + Delta-G solvation = -30647.024429 eV Core-core repulsion = 26374.329148 eV Total energy + Delta-G solvation = -4272.695281 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.10956 -40.05525 -39.27386 -38.15521 -36.48300 -34.94943 -33.01213 -32.78537 -31.78875 -30.83415 -29.62452 -29.16336 -27.24435 -26.44782 -23.53121 -22.87390 -22.52740 -22.16952 -21.92699 -20.44555 -19.28290 -18.31229 -17.52259 -16.99265 -16.69773 -16.62929 -16.32835 -15.98089 -15.49550 -15.26853 -14.99108 -14.70826 -14.43068 -14.26450 -14.06636 -13.91863 -13.47356 -13.23319 -13.05541 -12.88280 -12.70950 -12.42270 -12.34825 -12.30273 -12.19166 -11.79426 -11.55340 -11.33729 -11.29948 -11.24614 -11.15075 -10.90592 -10.75343 -10.73199 -10.62362 -10.25467 -9.83922 -9.82126 -9.50416 -8.76858 -8.67925 -8.51754 -7.82134 -6.14061 -4.19210 1.46595 1.56648 1.97398 2.24593 3.01803 3.25028 3.32466 3.36035 3.40023 3.64069 3.93841 4.00713 4.31168 4.36707 4.43499 4.68223 4.68705 4.80222 4.85791 5.04853 5.06326 5.11100 5.14920 5.21456 5.22713 5.26080 5.29228 5.30797 5.39323 5.54742 5.59953 5.60996 5.74011 5.80295 5.89221 5.92525 6.17976 6.22891 6.52252 6.65838 6.65865 6.69103 6.85002 7.10380 7.22436 7.33379 7.53321 7.81015 8.07884 8.13606 8.64725 8.85170 9.45743 10.94368 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.010614 B = 0.002986 C = 0.002590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2637.468169 B = 9375.470075 C =10808.859460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.089 3.911 3 H 0.101 0.899 4 O -0.375 6.375 5 C 0.051 3.949 6 C -0.145 4.145 7 C -0.116 4.116 8 H 0.127 0.873 9 C 0.473 3.527 10 O -0.504 6.504 11 O -0.325 6.325 12 C 0.050 3.950 13 C 0.517 3.483 14 O -0.505 6.505 15 N -0.555 5.555 16 C 0.249 3.751 17 C -0.530 4.530 18 H 0.059 0.941 19 C 0.063 3.937 20 N -0.892 5.892 21 Si 0.900 3.100 22 H -0.273 1.273 23 H -0.282 1.282 24 H -0.282 1.282 25 C 0.152 3.848 26 C -0.127 4.127 27 C -0.107 4.107 28 C -0.131 4.131 29 C -0.108 4.108 30 C -0.122 4.122 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.061 0.939 34 H 0.091 0.909 35 H 0.066 0.934 36 H 0.085 0.915 37 H 0.102 0.898 38 H 0.100 0.900 39 H 0.096 0.904 40 H 0.039 0.961 41 H 0.051 0.949 42 H 0.264 0.736 43 H 0.123 0.877 44 H 0.122 0.878 45 H 0.120 0.880 46 H 0.123 0.877 47 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.322 6.181 18.213 19.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.032 3.968 3 H 0.118 0.882 4 O -0.295 6.295 5 C -0.025 4.025 6 C -0.182 4.182 7 C -0.135 4.135 8 H 0.144 0.856 9 C 0.316 3.684 10 O -0.391 6.391 11 O -0.240 6.240 12 C -0.027 4.027 13 C 0.303 3.697 14 O -0.380 6.380 15 N -0.284 5.284 16 C 0.132 3.868 17 C -0.569 4.569 18 H 0.077 0.923 19 C -0.139 4.139 20 N -0.531 5.531 21 Si 0.728 3.272 22 H -0.197 1.197 23 H -0.208 1.208 24 H -0.207 1.207 25 C 0.061 3.939 26 C -0.147 4.147 27 C -0.126 4.126 28 C -0.149 4.149 29 C -0.127 4.127 30 C -0.142 4.142 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.080 0.920 34 H 0.110 0.890 35 H 0.085 0.915 36 H 0.104 0.896 37 H 0.121 0.879 38 H 0.118 0.882 39 H 0.114 0.886 40 H 0.057 0.943 41 H 0.069 0.931 42 H 0.074 0.926 43 H 0.141 0.859 44 H 0.140 0.860 45 H 0.138 0.862 46 H 0.141 0.859 47 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -4.263 5.779 18.238 19.601 hybrid contribution -0.681 0.031 -1.372 1.532 sum -4.944 5.810 16.866 18.511 Atomic orbital electron populations 1.22137 0.94006 1.02719 1.03026 1.22688 0.94912 0.96996 0.82240 0.88172 1.88470 1.71008 1.40516 1.29479 1.23412 0.95407 0.89090 0.94605 1.23291 0.96791 1.01798 0.96353 1.22660 1.00602 0.97082 0.93151 0.85554 1.23190 0.74493 0.88705 0.82058 1.90675 1.52139 1.17852 1.78481 1.86542 1.69904 1.40068 1.27489 1.22981 1.01572 0.90107 0.88084 1.19702 0.79483 0.87692 0.82855 1.90729 1.55968 1.13127 1.78130 1.45873 1.59540 1.03424 1.19588 1.19517 0.94805 0.93760 0.78764 1.21388 0.96840 1.39215 0.99427 0.92263 1.24911 0.95857 0.94964 0.98171 1.69936 1.20169 1.39195 1.23775 0.86407 0.81885 0.77942 0.81012 1.19745 1.20847 1.20749 1.17795 0.93311 0.83937 0.98899 1.21385 0.98081 0.94150 1.01046 1.20985 0.97900 0.93901 0.99785 1.21094 0.92566 0.99659 1.01617 1.20990 0.98374 0.93322 1.00022 1.21305 0.97330 0.94871 1.00644 0.91312 0.91134 0.91989 0.89042 0.91537 0.89592 0.87945 0.88172 0.88617 0.94295 0.93082 0.92601 0.85885 0.85953 0.86211 0.85912 0.85589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.39 9.44 37.16 0.35 -1.04 16 2 C 0.09 0.91 3.58 -26.01 -0.09 0.82 16 3 H 0.10 1.15 6.88 -51.93 -0.36 0.80 16 4 O -0.38 -3.96 11.02 -35.23 -0.39 -4.35 16 5 C 0.05 0.41 7.78 38.19 0.30 0.70 16 6 C -0.14 -1.28 6.59 -24.48 -0.16 -1.44 16 7 C -0.12 -1.19 3.02 -89.83 -0.27 -1.46 16 8 H 0.13 1.10 7.85 -51.93 -0.41 0.69 16 9 C 0.47 6.42 7.27 36.01 0.26 6.68 16 10 O -0.50 -7.60 15.24 -18.75 -0.29 -7.89 16 11 O -0.33 -5.20 9.75 -45.88 -0.45 -5.65 16 12 C 0.05 0.82 4.46 36.01 0.16 0.98 16 13 C 0.52 10.76 7.65 -10.99 -0.08 10.68 16 14 O -0.51 -12.46 16.06 -14.06 -0.23 -12.68 16 15 N -0.55 -11.72 2.51 -114.74 -0.29 -12.01 16 16 C 0.25 6.36 5.15 -5.20 -0.03 6.33 16 17 C -0.53 -14.74 9.39 -34.44 -0.32 -15.06 16 18 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 19 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16 20 N -0.89 -25.98 13.29 55.43 0.74 -25.24 16 21 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 16 22 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 23 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 24 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 25 C 0.15 2.71 4.43 -83.69 -0.37 2.34 16 26 C -0.13 -2.01 8.45 -39.39 -0.33 -2.34 16 27 C -0.11 -1.40 10.04 -39.61 -0.40 -1.80 16 28 C -0.13 -1.59 10.04 -39.55 -0.40 -1.99 16 29 C -0.11 -1.40 10.04 -39.61 -0.40 -1.79 16 30 C -0.12 -1.91 9.66 -39.39 -0.38 -2.29 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.09 0.60 8.14 -51.92 -0.42 0.17 16 35 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.09 0.80 8.04 -51.93 -0.42 0.38 16 37 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.10 1.53 6.89 -51.93 -0.36 1.17 16 39 H 0.10 1.44 7.86 -51.93 -0.41 1.03 16 40 H 0.04 1.01 7.84 -51.93 -0.41 0.61 16 41 H 0.05 1.45 7.36 -51.93 -0.38 1.07 16 42 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 43 H 0.12 1.93 7.55 -52.49 -0.40 1.53 16 44 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 45 H 0.12 1.12 8.06 -52.48 -0.42 0.69 16 46 H 0.12 1.25 8.06 -52.49 -0.42 0.82 16 47 H 0.13 1.92 8.06 -52.49 -0.42 1.49 16 LS Contribution 398.62 15.07 6.01 6.01 Total: -1.00 -33.50 398.62 -9.08 -42.58 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: -6.91 Total: 1.67 kcal Atomic # 6 Polarization: 3.27 SS G_CDS: -2.26 Total: 1.00 kcal Atomic # 7 Polarization: -37.70 SS G_CDS: 0.45 Total: -37.25 kcal Atomic # 8 Polarization: -29.22 SS G_CDS: -1.35 Total: -30.57 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -33.50 -9.08 -42.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771080164.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.387 kcal (2) G-P(sol) polarization free energy of solvation -33.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds