Wall clock time and date at job start Wed Apr 1 2020 05:26:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.86844 * 2 1 4 4 C 1.54100 * 110.00543 * 121.08346 * 2 1 3 5 5 C 1.54801 * 104.18889 * 121.52399 * 4 2 1 6 6 H 1.08992 * 110.90907 * 262.68189 * 5 4 2 7 7 C 1.50704 * 110.93616 * 139.08934 * 5 4 2 8 8 O 1.20830 * 120.00225 * 2.95535 * 7 5 4 9 9 O 1.34231 * 120.00199 * 182.94560 * 7 5 4 10 10 C 1.45200 * 117.00455 * 180.02562 * 9 7 5 11 11 C 1.50698 * 109.47213 * 180.02562 * 10 9 7 12 12 O 1.21284 * 120.00222 * 5.12611 * 11 10 9 13 13 N 1.34777 * 119.99735 * 185.12921 * 11 10 9 14 14 C 1.46503 * 119.99808 * 185.21985 * 13 11 10 15 15 C 1.50704 * 109.46959 * 89.99652 * 14 13 11 16 16 H 1.08004 * 120.00051 * 0.02562 * 15 14 13 17 17 C 1.37872 * 120.00078 * 179.97438 * 15 14 13 18 18 N 1.31516 * 119.99876 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00478 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47223 * 89.99979 * 19 17 15 21 21 H 1.48496 * 109.47542 * 210.00250 * 19 17 15 22 22 H 1.48507 * 109.46988 * 330.00577 * 19 17 15 23 23 C 1.39921 * 120.00002 * 5.21799 * 13 11 10 24 24 C 1.38873 * 120.07312 * 292.47200 * 23 13 11 25 25 C 1.38116 * 119.93139 * 179.74610 * 24 23 13 26 26 C 1.38279 * 120.06680 * 0.53853 * 25 24 23 27 27 C 1.38279 * 120.14372 * 359.73863 * 26 25 24 28 28 C 1.38119 * 120.07272 * 359.97438 * 27 26 25 29 29 C 1.54995 * 102.09158 * 20.88283 * 5 4 2 30 30 O 1.43736 * 109.87864 * 238.98974 * 2 1 3 31 31 H 1.09004 * 109.46923 * 179.55899 * 1 2 3 32 32 H 1.09000 * 109.47205 * 299.55169 * 1 2 3 33 33 H 1.08992 * 109.47157 * 59.55598 * 1 2 3 34 34 H 1.09002 * 110.48835 * 2.84635 * 4 2 1 35 35 H 1.09008 * 110.48682 * 240.20381 * 4 2 1 36 36 H 1.09001 * 109.46956 * 300.00912 * 10 9 7 37 37 H 1.08997 * 109.46624 * 59.99888 * 10 9 7 38 38 H 1.08998 * 109.47266 * 209.99618 * 14 13 11 39 39 H 1.08996 * 109.47009 * 329.99840 * 14 13 11 40 40 H 0.97005 * 120.00210 * 180.02562 * 18 17 15 41 41 H 1.08000 * 120.03559 * 0.02985 * 24 23 13 42 42 H 1.07998 * 119.96828 * 180.27732 * 25 24 23 43 43 H 1.08001 * 119.93056 * 179.77177 * 26 25 24 44 44 H 1.08003 * 119.97150 * 180.02562 * 27 26 25 45 45 H 1.07995 * 120.04017 * 180.02562 * 28 27 26 46 46 H 1.09004 * 110.62167 * 81.47876 * 29 5 4 47 47 H 1.09007 * 110.61825 * 204.31271 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0252 0.0000 4 6 2.0572 -0.7476 1.2401 5 6 2.9244 -1.8887 0.6551 6 1 2.3608 -2.8204 0.6077 7 6 4.1890 -2.0681 1.4548 8 8 4.3796 -1.3984 2.4423 9 8 5.1038 -2.9721 1.0702 10 6 6.2974 -3.0914 1.8883 11 6 7.2021 -4.1467 1.3062 12 8 6.9185 -4.6739 0.2514 13 7 8.3263 -4.5045 1.9577 14 6 9.2635 -5.4454 1.3390 15 6 10.2781 -4.6826 0.5266 16 1 10.2299 -3.6048 0.4766 17 6 11.2685 -5.3606 -0.1519 18 7 11.3275 -6.6730 -0.0905 19 14 12.5266 -4.4152 -1.1583 20 1 13.6910 -4.0748 -0.3018 21 1 12.9787 -5.2523 -2.2984 22 1 11.9102 -3.1666 -1.6747 23 6 8.5984 -3.9775 3.2250 24 6 8.8847 -2.6263 3.3700 25 6 9.1476 -2.1082 4.6229 26 6 9.1369 -2.9354 5.7310 27 6 8.8579 -4.2823 5.5893 28 6 8.5883 -4.8056 4.3398 29 6 3.2398 -1.3601 -0.7674 30 8 2.0187 -0.6964 -1.1585 31 1 -0.3633 -1.0277 -0.0079 32 1 -0.3633 0.5068 0.8940 33 1 -0.3633 0.5207 -0.8859 34 1 1.2294 -1.1562 1.8198 35 1 2.6645 -0.0842 1.8560 36 1 6.8208 -2.1355 1.9089 37 1 6.0157 -3.3731 2.9029 38 1 9.7738 -6.0141 2.1163 39 1 8.7167 -6.1282 0.6889 40 1 12.0245 -7.1500 -0.5676 41 1 8.8972 -1.9805 2.5044 42 1 9.3659 -1.0566 4.7369 43 1 9.3465 -2.5286 6.7092 44 1 8.8499 -4.9258 6.4566 45 1 8.3700 -5.8575 4.2298 46 1 4.0690 -0.6531 -0.7391 47 1 3.4641 -2.1859 -1.4428 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000784281993.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:26:13 Heat of formation + Delta-G solvation = -132.072832 kcal Electronic energy + Delta-G solvation = -30447.679726 eV Core-core repulsion = 26174.979992 eV Total energy + Delta-G solvation = -4272.699733 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.05498 -40.03880 -39.29966 -38.16034 -36.49825 -34.94454 -32.84064 -32.76268 -32.17823 -30.83223 -29.60117 -29.09706 -26.85364 -26.24523 -24.20030 -22.97603 -22.55052 -22.14788 -21.65034 -20.44271 -19.27615 -18.24919 -17.51777 -16.95618 -16.67523 -16.53706 -16.05868 -16.02430 -15.66447 -15.45443 -15.02753 -14.98717 -14.39737 -14.23990 -14.12685 -13.73922 -13.26351 -13.22918 -13.09681 -12.84607 -12.67138 -12.58475 -12.40743 -12.35008 -12.20304 -11.66268 -11.54207 -11.30612 -11.28630 -11.16878 -11.14489 -10.91723 -10.74855 -10.70669 -10.60591 -10.24482 -10.04647 -9.83142 -9.49894 -8.77059 -8.67536 -8.50752 -7.81703 -6.12977 -4.18226 1.46440 1.56438 1.96768 2.25462 3.02593 3.26460 3.32950 3.36572 3.46088 3.71286 3.93496 3.97140 4.33504 4.37967 4.53737 4.60723 4.68893 4.75963 4.82533 5.00379 5.05903 5.10864 5.16087 5.22155 5.22626 5.28615 5.29325 5.32076 5.41940 5.57622 5.59747 5.60737 5.65612 5.73816 5.82441 5.92483 6.17791 6.23891 6.52076 6.52977 6.65571 6.69130 6.85374 7.10576 7.23247 7.33999 7.53710 7.81788 8.08740 8.14270 8.65538 8.85778 9.46650 10.95415 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.010274 B = 0.002939 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2724.690497 B = 9523.307146 C =11346.825059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.070 3.930 3 H 0.072 0.928 4 C -0.142 4.142 5 C -0.117 4.117 6 H 0.126 0.874 7 C 0.471 3.529 8 O -0.504 6.504 9 O -0.326 6.326 10 C 0.050 3.950 11 C 0.517 3.483 12 O -0.505 6.505 13 N -0.555 5.555 14 C 0.249 3.751 15 C -0.530 4.530 16 H 0.058 0.942 17 C 0.064 3.936 18 N -0.892 5.892 19 Si 0.900 3.100 20 H -0.279 1.279 21 H -0.284 1.284 22 H -0.273 1.273 23 C 0.153 3.847 24 C -0.127 4.127 25 C -0.107 4.107 26 C -0.131 4.131 27 C -0.109 4.109 28 C -0.122 4.122 29 C 0.063 3.937 30 O -0.367 6.367 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.064 0.936 34 H 0.089 0.911 35 H 0.097 0.903 36 H 0.100 0.900 37 H 0.096 0.904 38 H 0.039 0.961 39 H 0.051 0.949 40 H 0.265 0.735 41 H 0.123 0.877 42 H 0.122 0.878 43 H 0.120 0.880 44 H 0.123 0.877 45 H 0.126 0.874 46 H 0.068 0.932 47 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.092 11.368 8.704 21.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.013 3.987 3 H 0.090 0.910 4 C -0.179 4.179 5 C -0.137 4.137 6 H 0.144 0.856 7 C 0.313 3.687 8 O -0.392 6.392 9 O -0.241 6.241 10 C -0.027 4.027 11 C 0.302 3.698 12 O -0.378 6.378 13 N -0.285 5.285 14 C 0.132 3.868 15 C -0.569 4.569 16 H 0.077 0.923 17 C -0.139 4.139 18 N -0.531 5.531 19 Si 0.727 3.273 20 H -0.206 1.206 21 H -0.210 1.210 22 H -0.198 1.198 23 C 0.061 3.939 24 C -0.147 4.147 25 C -0.126 4.126 26 C -0.150 4.150 27 C -0.127 4.127 28 C -0.142 4.142 29 C -0.014 4.014 30 O -0.286 6.286 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.083 0.917 34 H 0.107 0.893 35 H 0.115 0.885 36 H 0.118 0.882 37 H 0.114 0.886 38 H 0.057 0.943 39 H 0.069 0.931 40 H 0.075 0.925 41 H 0.141 0.859 42 H 0.140 0.860 43 H 0.138 0.862 44 H 0.141 0.859 45 H 0.144 0.856 46 H 0.087 0.913 47 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -16.156 11.058 8.087 21.182 hybrid contribution 1.219 0.456 -0.102 1.306 sum -14.937 11.514 7.985 20.480 Atomic orbital electron populations 1.21940 0.93360 1.03019 1.02534 1.22797 0.95453 0.96054 0.84435 0.90962 1.23081 0.99807 0.96535 0.98491 1.22599 0.91871 1.02726 0.96457 0.85610 1.23291 0.84703 0.76876 0.83792 1.90665 1.77558 1.44758 1.26230 1.86548 1.28780 1.55409 1.53359 1.22980 0.84331 1.00844 0.94588 1.19700 0.81530 0.83288 0.85236 1.90731 1.72248 1.53415 1.21456 1.45877 1.21380 1.46190 1.15011 1.19516 0.86366 0.87414 0.93532 1.21344 1.11820 0.93615 1.30113 0.92327 1.24907 0.97719 0.94919 0.96334 1.69924 1.33940 1.06431 1.42798 0.86463 0.81203 0.79842 0.79754 1.20553 1.20959 1.19805 1.17798 0.98636 0.92158 0.85327 1.21385 1.00295 0.95067 0.97924 1.20984 0.99734 0.99723 0.92148 1.21093 1.01431 0.93870 0.98574 1.20991 0.99592 0.95367 0.96765 1.21309 1.00880 1.00261 0.91705 1.23490 0.87955 0.97300 0.92683 1.88933 1.39218 1.67572 1.32906 0.91703 0.91126 0.91731 0.89286 0.88495 0.88197 0.88618 0.94311 0.93058 0.92542 0.85876 0.85963 0.86221 0.85915 0.85578 0.91332 0.86870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.37 37.16 0.35 -0.65 16 2 C 0.07 0.59 4.05 -26.16 -0.11 0.49 16 3 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 4 C -0.14 -1.22 6.04 -25.21 -0.15 -1.37 16 5 C -0.12 -1.19 3.63 -89.77 -0.33 -1.52 16 6 H 0.13 1.10 8.14 -51.93 -0.42 0.68 16 7 C 0.47 6.32 7.27 36.01 0.26 6.58 16 8 O -0.50 -7.51 15.23 -18.75 -0.29 -7.80 16 9 O -0.33 -5.20 9.76 -45.89 -0.45 -5.65 16 10 C 0.05 0.82 4.46 36.00 0.16 0.98 16 11 C 0.52 10.77 7.65 -10.99 -0.08 10.69 16 12 O -0.50 -12.47 16.06 -14.05 -0.23 -12.70 16 13 N -0.55 -11.74 2.51 -114.74 -0.29 -12.03 16 14 C 0.25 6.38 5.15 -5.19 -0.03 6.35 16 15 C -0.53 -14.77 9.39 -34.44 -0.32 -15.09 16 16 H 0.06 1.63 7.81 -52.48 -0.41 1.22 16 17 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 18 N -0.89 -26.06 13.29 55.43 0.74 -25.33 16 19 Si 0.90 21.63 29.54 -169.99 -5.02 16.61 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 23 C 0.15 2.71 4.43 -83.69 -0.37 2.34 16 24 C -0.13 -2.00 8.45 -39.39 -0.33 -2.34 16 25 C -0.11 -1.40 10.04 -39.61 -0.40 -1.80 16 26 C -0.13 -1.59 10.04 -39.55 -0.40 -1.98 16 27 C -0.11 -1.39 10.04 -39.61 -0.40 -1.79 16 28 C -0.12 -1.91 9.66 -39.39 -0.38 -2.29 16 29 C 0.06 0.65 7.16 38.21 0.27 0.92 16 30 O -0.37 -3.98 11.19 -35.23 -0.39 -4.37 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.09 0.63 7.70 -51.93 -0.40 0.23 16 35 H 0.10 0.92 6.90 -51.92 -0.36 0.56 16 36 H 0.10 1.52 6.88 -51.93 -0.36 1.16 16 37 H 0.10 1.43 7.86 -51.93 -0.41 1.02 16 38 H 0.04 1.01 7.84 -51.93 -0.41 0.60 16 39 H 0.05 1.46 7.36 -51.93 -0.38 1.08 16 40 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 41 H 0.12 1.92 7.55 -52.49 -0.40 1.52 16 42 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 43 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 44 H 0.12 1.24 8.06 -52.48 -0.42 0.82 16 45 H 0.13 1.92 8.06 -52.49 -0.42 1.50 16 46 H 0.07 0.71 8.04 -51.93 -0.42 0.30 16 47 H 0.11 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 398.53 15.07 6.01 6.01 Total: -1.00 -33.51 398.53 -9.17 -42.68 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: -6.90 Total: 1.36 kcal Atomic # 6 Polarization: 3.57 SS G_CDS: -2.35 Total: 1.22 kcal Atomic # 7 Polarization: -37.81 SS G_CDS: 0.45 Total: -37.36 kcal Atomic # 8 Polarization: -29.16 SS G_CDS: -1.35 Total: -30.52 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -33.51 -9.17 -42.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784281993.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.394 kcal (2) G-P(sol) polarization free energy of solvation -33.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds