Wall clock time and date at job start Wed Apr 1 2020 05:26:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.86844 * 2 1 4 4 C 1.54100 * 110.00543 * 121.08346 * 2 1 3 5 5 C 1.54801 * 104.18889 * 121.52399 * 4 2 1 6 6 H 1.08992 * 110.90907 * 262.68189 * 5 4 2 7 7 C 1.50704 * 110.93616 * 139.08934 * 5 4 2 8 8 O 1.20830 * 120.00225 * 2.95535 * 7 5 4 9 9 O 1.34231 * 120.00199 * 182.94560 * 7 5 4 10 10 C 1.45200 * 117.00455 * 180.02562 * 9 7 5 11 11 C 1.50698 * 109.47213 * 180.02562 * 10 9 7 12 12 O 1.21284 * 120.00222 * 5.12611 * 11 10 9 13 13 N 1.34777 * 119.99735 * 185.12921 * 11 10 9 14 14 C 1.46503 * 119.99808 * 185.21985 * 13 11 10 15 15 C 1.50704 * 109.46959 * 89.99652 * 14 13 11 16 16 H 1.08004 * 120.00051 * 0.02562 * 15 14 13 17 17 C 1.37872 * 120.00078 * 179.97438 * 15 14 13 18 18 N 1.31516 * 119.99876 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00478 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47223 * 89.99979 * 19 17 15 21 21 H 1.48496 * 109.47542 * 210.00250 * 19 17 15 22 22 H 1.48507 * 109.46988 * 330.00577 * 19 17 15 23 23 C 1.39921 * 120.00002 * 5.21799 * 13 11 10 24 24 C 1.38873 * 120.07312 * 292.47200 * 23 13 11 25 25 C 1.38116 * 119.93139 * 179.74610 * 24 23 13 26 26 C 1.38279 * 120.06680 * 0.53853 * 25 24 23 27 27 C 1.38279 * 120.14372 * 359.73863 * 26 25 24 28 28 C 1.38119 * 120.07272 * 359.97438 * 27 26 25 29 29 C 1.54995 * 102.09158 * 20.88283 * 5 4 2 30 30 O 1.43736 * 109.87864 * 238.98974 * 2 1 3 31 31 H 1.09004 * 109.46923 * 179.55899 * 1 2 3 32 32 H 1.09000 * 109.47205 * 299.55169 * 1 2 3 33 33 H 1.08992 * 109.47157 * 59.55598 * 1 2 3 34 34 H 1.09002 * 110.48835 * 2.84635 * 4 2 1 35 35 H 1.09008 * 110.48682 * 240.20381 * 4 2 1 36 36 H 1.09001 * 109.46956 * 300.00912 * 10 9 7 37 37 H 1.08997 * 109.46624 * 59.99888 * 10 9 7 38 38 H 1.08998 * 109.47266 * 209.99618 * 14 13 11 39 39 H 1.08996 * 109.47009 * 329.99840 * 14 13 11 40 40 H 0.97005 * 120.00210 * 180.02562 * 18 17 15 41 41 H 1.08000 * 120.03559 * 0.02985 * 24 23 13 42 42 H 1.07998 * 119.96828 * 180.27732 * 25 24 23 43 43 H 1.08001 * 119.93056 * 179.77177 * 26 25 24 44 44 H 1.08003 * 119.97150 * 180.02562 * 27 26 25 45 45 H 1.07995 * 120.04017 * 180.02562 * 28 27 26 46 46 H 1.09004 * 110.62167 * 81.47876 * 29 5 4 47 47 H 1.09007 * 110.61825 * 204.31271 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0252 0.0000 4 6 2.0572 -0.7476 1.2401 5 6 2.9244 -1.8887 0.6551 6 1 2.3608 -2.8204 0.6077 7 6 4.1890 -2.0681 1.4548 8 8 4.3796 -1.3984 2.4423 9 8 5.1038 -2.9721 1.0702 10 6 6.2974 -3.0914 1.8883 11 6 7.2021 -4.1467 1.3062 12 8 6.9185 -4.6739 0.2514 13 7 8.3263 -4.5045 1.9577 14 6 9.2635 -5.4454 1.3390 15 6 10.2781 -4.6826 0.5266 16 1 10.2299 -3.6048 0.4766 17 6 11.2685 -5.3606 -0.1519 18 7 11.3275 -6.6730 -0.0905 19 14 12.5266 -4.4152 -1.1583 20 1 13.6910 -4.0748 -0.3018 21 1 12.9787 -5.2523 -2.2984 22 1 11.9102 -3.1666 -1.6747 23 6 8.5984 -3.9775 3.2250 24 6 8.8847 -2.6263 3.3700 25 6 9.1476 -2.1082 4.6229 26 6 9.1369 -2.9354 5.7310 27 6 8.8579 -4.2823 5.5893 28 6 8.5883 -4.8056 4.3398 29 6 3.2398 -1.3601 -0.7674 30 8 2.0187 -0.6964 -1.1585 31 1 -0.3633 -1.0277 -0.0079 32 1 -0.3633 0.5068 0.8940 33 1 -0.3633 0.5207 -0.8859 34 1 1.2294 -1.1562 1.8198 35 1 2.6645 -0.0842 1.8560 36 1 6.8208 -2.1355 1.9089 37 1 6.0157 -3.3731 2.9029 38 1 9.7738 -6.0141 2.1163 39 1 8.7167 -6.1282 0.6889 40 1 12.0245 -7.1500 -0.5676 41 1 8.8972 -1.9805 2.5044 42 1 9.3659 -1.0566 4.7369 43 1 9.3465 -2.5286 6.7092 44 1 8.8499 -4.9258 6.4566 45 1 8.3700 -5.8575 4.2298 46 1 4.0690 -0.6531 -0.7391 47 1 3.4641 -2.1859 -1.4428 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000784281993.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:26:12 Heat of formation + Delta-G solvation = -150.658466 kcal Electronic energy + Delta-G solvation = -30448.485659 eV Core-core repulsion = 26174.979992 eV Total energy + Delta-G solvation = -4273.505667 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.18524 -41.39575 -40.23198 -39.51641 -37.72296 -36.58868 -34.85537 -33.61991 -32.88519 -31.97572 -31.15907 -30.40800 -28.58478 -26.99648 -25.42746 -24.63222 -23.78602 -23.38887 -22.42590 -21.39284 -20.72998 -19.31356 -18.91494 -18.65818 -18.03209 -17.86314 -17.34493 -17.12020 -16.86784 -16.48621 -16.34435 -16.27375 -15.83172 -15.51582 -15.29790 -14.72414 -14.62345 -14.43963 -14.34120 -14.02810 -13.91705 -13.66040 -13.46322 -13.42232 -13.40151 -13.09314 -12.99647 -12.68564 -12.49224 -12.44104 -12.24422 -12.16154 -12.02651 -11.97527 -11.86241 -11.77347 -11.66301 -11.14188 -10.79447 -10.69370 -10.19549 -9.87276 -9.33341 -8.28197 -6.43063 0.29327 0.46019 0.88936 1.05929 1.33687 1.36939 1.40889 1.48624 2.15071 2.36251 2.77861 2.82422 3.02366 3.15331 3.26743 3.56522 3.60779 3.83422 3.84226 3.90104 4.04596 4.06202 4.08250 4.08675 4.29153 4.41949 4.55188 4.55947 4.60156 4.64631 4.67688 4.80291 4.87927 4.90497 4.95127 5.05560 5.09340 5.11300 5.14551 5.31160 5.33498 5.49651 5.58915 5.60712 5.68463 5.81076 5.95022 6.01003 6.38537 6.53151 6.63358 7.04702 7.27840 8.79574 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.010274 B = 0.002939 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2724.690497 B = 9523.307146 C =11346.825059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.065 3.935 3 H 0.077 0.923 4 C -0.134 4.134 5 C -0.114 4.114 6 H 0.143 0.857 7 C 0.474 3.526 8 O -0.517 6.517 9 O -0.344 6.344 10 C 0.067 3.933 11 C 0.510 3.490 12 O -0.558 6.558 13 N -0.555 5.555 14 C 0.266 3.734 15 C -0.546 4.546 16 H 0.054 0.946 17 C 0.012 3.988 18 N -0.925 5.925 19 Si 0.968 3.032 20 H -0.265 1.265 21 H -0.278 1.278 22 H -0.271 1.271 23 C 0.113 3.887 24 C -0.139 4.139 25 C -0.103 4.103 26 C -0.117 4.117 27 C -0.103 4.103 28 C -0.137 4.137 29 C 0.061 3.939 30 O -0.382 6.382 31 H 0.064 0.936 32 H 0.089 0.911 33 H 0.062 0.938 34 H 0.108 0.892 35 H 0.089 0.911 36 H 0.114 0.886 37 H 0.113 0.887 38 H 0.027 0.973 39 H 0.010 0.990 40 H 0.269 0.731 41 H 0.117 0.883 42 H 0.154 0.846 43 H 0.161 0.839 44 H 0.155 0.845 45 H 0.117 0.883 46 H 0.064 0.936 47 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.286 13.761 10.961 23.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.007 3.993 3 H 0.095 0.905 4 C -0.172 4.172 5 C -0.133 4.133 6 H 0.160 0.840 7 C 0.318 3.682 8 O -0.406 6.406 9 O -0.259 6.259 10 C -0.010 4.010 11 C 0.298 3.702 12 O -0.436 6.436 13 N -0.283 5.283 14 C 0.147 3.853 15 C -0.584 4.584 16 H 0.072 0.928 17 C -0.188 4.188 18 N -0.564 5.564 19 Si 0.792 3.208 20 H -0.190 1.190 21 H -0.203 1.203 22 H -0.196 1.196 23 C 0.023 3.977 24 C -0.158 4.158 25 C -0.121 4.121 26 C -0.135 4.135 27 C -0.121 4.121 28 C -0.157 4.157 29 C -0.015 4.015 30 O -0.302 6.302 31 H 0.083 0.917 32 H 0.108 0.892 33 H 0.082 0.918 34 H 0.127 0.873 35 H 0.107 0.893 36 H 0.131 0.869 37 H 0.131 0.869 38 H 0.045 0.955 39 H 0.028 0.972 40 H 0.078 0.922 41 H 0.135 0.865 42 H 0.172 0.828 43 H 0.178 0.822 44 H 0.172 0.828 45 H 0.135 0.865 46 H 0.083 0.917 47 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -16.359 13.483 10.398 23.612 hybrid contribution 1.254 -0.267 -0.682 1.452 sum -15.106 13.216 9.716 22.299 Atomic orbital electron populations 1.21951 0.91782 1.03341 1.03470 1.22991 0.96711 0.95998 0.83553 0.90500 1.23090 0.99887 0.95680 0.98527 1.22738 0.90480 1.04216 0.95861 0.83964 1.23873 0.84750 0.75815 0.83806 1.90650 1.77843 1.45087 1.26995 1.86565 1.28974 1.56573 1.53790 1.22716 0.84149 0.99455 0.94656 1.20466 0.81662 0.83488 0.84580 1.90687 1.73532 1.55516 1.23835 1.45658 1.20747 1.45408 1.16472 1.18935 0.86260 0.87649 0.92506 1.21594 1.12556 0.93511 1.30732 0.92780 1.25825 0.99764 0.95868 0.97340 1.70040 1.34816 1.07955 1.43626 0.85404 0.78744 0.78363 0.78277 1.18977 1.20341 1.19569 1.18071 1.02080 0.93553 0.84015 1.21437 1.01066 0.94025 0.99295 1.21368 0.98216 1.01472 0.91042 1.21598 0.98705 0.93171 1.00013 1.21369 0.97968 0.96477 0.96282 1.21408 1.01811 0.99852 0.92608 1.23467 0.87978 0.97257 0.92847 1.88926 1.39181 1.67863 1.34188 0.91665 0.89185 0.91844 0.87311 0.89262 0.86856 0.86909 0.95523 0.97178 0.92200 0.86539 0.82846 0.82157 0.82755 0.86482 0.91749 0.87012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.37 71.98 0.67 -0.99 16 2 C 0.06 1.00 4.05 30.97 0.13 1.12 16 3 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 4 C -0.13 -2.07 6.04 31.58 0.19 -1.88 16 5 C -0.11 -2.21 3.63 -10.24 -0.04 -2.25 16 6 H 0.14 2.30 8.14 -2.39 -0.02 2.28 16 7 C 0.47 12.48 7.27 71.24 0.52 13.00 16 8 O -0.52 -14.86 15.23 21.95 0.33 -14.53 16 9 O -0.34 -11.15 9.76 -45.08 -0.44 -11.59 16 10 C 0.07 2.24 4.46 71.24 0.32 2.56 16 11 C 0.51 22.48 7.65 87.66 0.67 23.15 16 12 O -0.56 -29.54 16.06 15.70 0.25 -29.29 16 13 N -0.55 -24.81 2.51 -635.30 -1.59 -26.40 16 14 C 0.27 14.56 5.15 85.63 0.44 15.00 16 15 C -0.55 -31.62 9.39 25.60 0.24 -31.38 16 16 H 0.05 3.10 7.81 -2.91 -0.02 3.08 16 17 C 0.01 0.67 5.46 84.65 0.46 1.13 16 18 N -0.93 -55.75 13.29 21.45 0.28 -55.47 16 19 Si 0.97 44.90 29.54 68.60 2.03 46.93 16 20 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 21 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 22 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 23 C 0.11 4.09 4.43 38.15 0.17 4.26 16 24 C -0.14 -4.27 8.45 22.39 0.19 -4.08 16 25 C -0.10 -2.34 10.04 22.25 0.22 -2.12 16 26 C -0.12 -2.32 10.04 22.29 0.22 -2.10 16 27 C -0.10 -2.34 10.04 22.25 0.22 -2.12 16 28 C -0.14 -4.28 9.66 22.39 0.22 -4.06 16 29 C 0.06 1.27 7.16 72.66 0.52 1.79 16 30 O -0.38 -8.00 11.19 -148.98 -1.67 -9.67 16 31 H 0.06 0.73 8.14 -2.39 -0.02 0.72 16 32 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.11 1.25 7.70 -2.39 -0.02 1.23 16 35 H 0.09 1.55 6.90 -2.38 -0.02 1.53 16 36 H 0.11 3.47 6.88 -2.39 -0.02 3.45 16 37 H 0.11 3.37 7.86 -2.39 -0.02 3.35 16 38 H 0.03 1.50 7.84 -2.39 -0.02 1.48 16 39 H 0.01 0.63 7.36 -2.39 -0.02 0.61 16 40 H 0.27 15.16 8.31 -92.70 -0.77 14.39 16 41 H 0.12 3.64 7.55 -2.91 -0.02 3.62 16 42 H 0.15 2.54 8.06 -2.91 -0.02 2.51 16 43 H 0.16 1.96 8.06 -2.91 -0.02 1.94 16 44 H 0.15 2.52 8.06 -2.91 -0.02 2.50 16 45 H 0.12 3.73 8.06 -2.91 -0.02 3.71 16 46 H 0.06 1.36 8.04 -2.38 -0.02 1.34 16 47 H 0.11 2.29 8.14 -2.38 -0.02 2.27 16 Total: -1.00 -76.48 398.53 5.54 -70.95 By element: Atomic # 1 Polarization: 17.06 SS G_CDS: 0.97 Total: 18.03 kcal Atomic # 6 Polarization: 5.66 SS G_CDS: 5.37 Total: 11.03 kcal Atomic # 7 Polarization: -80.56 SS G_CDS: -1.31 Total: -81.87 kcal Atomic # 8 Polarization: -63.55 SS G_CDS: -1.52 Total: -65.07 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Total: -76.48 5.54 -70.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784281993.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.712 kcal (2) G-P(sol) polarization free energy of solvation -76.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds