Wall clock time and date at job start Wed Apr 1 2020 05:26:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08993 * 110.27645 * 2 1 4 4 C 1.54948 * 110.39239 * 237.85305 * 2 1 3 5 5 C 1.55304 * 100.94183 * 204.59912 * 4 2 1 6 6 H 1.08991 * 111.02403 * 275.86139 * 5 4 2 7 7 C 1.50702 * 110.84722 * 152.32269 * 5 4 2 8 8 O 1.20836 * 119.99957 * 5.71405 * 7 5 4 9 9 O 1.34232 * 120.00307 * 185.71547 * 7 5 4 10 10 C 1.45197 * 117.00210 * 179.97438 * 9 7 5 11 11 C 1.50700 * 109.46934 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00322 * 354.74090 * 11 10 9 13 13 N 1.34775 * 119.99697 * 174.73937 * 11 10 9 14 14 C 1.46499 * 120.00178 * 184.45324 * 13 11 10 15 15 C 1.50699 * 109.47470 * 270.00151 * 14 13 11 16 16 H 1.08004 * 119.99459 * 359.97438 * 15 14 13 17 17 C 1.37876 * 120.00116 * 179.97438 * 15 14 13 18 18 N 1.31508 * 120.00113 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99674 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47342 * 0.02562 * 19 17 15 21 21 H 1.48496 * 109.47143 * 120.00287 * 19 17 15 22 22 H 1.48501 * 109.46933 * 239.99977 * 19 17 15 23 23 C 1.39929 * 120.00161 * 4.45222 * 13 11 10 24 24 C 1.38870 * 120.06855 * 246.72744 * 23 13 11 25 25 C 1.38119 * 119.92811 * 179.72550 * 24 23 13 26 26 C 1.38276 * 120.06634 * 0.27305 * 25 24 23 27 27 C 1.38284 * 120.14831 * 0.02562 * 26 25 24 28 28 C 1.38114 * 120.06556 * 359.97438 * 27 26 25 29 29 C 1.54382 * 102.25396 * 34.13737 * 5 4 2 30 30 O 1.43236 * 107.58513 * 338.64006 * 29 5 4 31 31 H 1.09000 * 109.46712 * 299.35953 * 1 2 3 32 32 H 1.09003 * 109.46949 * 59.36053 * 1 2 3 33 33 H 1.09002 * 109.47066 * 179.36386 * 1 2 3 34 34 H 1.09003 * 111.12411 * 86.67608 * 4 2 1 35 35 H 1.09001 * 111.12630 * 322.51723 * 4 2 1 36 36 H 1.09001 * 109.47039 * 59.99780 * 10 9 7 37 37 H 1.08997 * 109.47138 * 300.00251 * 10 9 7 38 38 H 1.09006 * 109.46709 * 30.00092 * 14 13 11 39 39 H 1.08998 * 109.47384 * 149.99848 * 14 13 11 40 40 H 0.97002 * 119.99794 * 179.97438 * 18 17 15 41 41 H 1.07997 * 120.03809 * 359.97438 * 24 23 13 42 42 H 1.07998 * 119.96505 * 180.25636 * 25 24 23 43 43 H 1.08006 * 119.92803 * 179.97438 * 26 25 24 44 44 H 1.07999 * 119.96810 * 179.97438 * 27 26 25 45 45 H 1.07997 * 120.03528 * 180.02562 * 28 27 26 46 46 H 1.08995 * 109.83398 * 98.15527 * 29 5 4 47 47 H 1.09002 * 109.82812 * 219.13362 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9077 1.0224 0.0000 4 6 2.0699 -0.7728 -1.2297 5 6 3.4722 -1.2002 -0.7169 6 1 4.2014 -0.4033 -0.8625 7 6 3.9261 -2.4691 -1.3914 8 8 3.2662 -2.9489 -2.2827 9 8 5.0634 -3.0664 -1.0021 10 6 5.4387 -4.2854 -1.6958 11 6 6.7329 -4.8085 -1.1278 12 8 7.3337 -4.1641 -0.2943 13 7 7.2226 -5.9924 -1.5460 14 6 8.4277 -6.5473 -0.9248 15 6 9.6450 -6.0660 -1.6716 16 1 9.5321 -5.4124 -2.5240 17 6 10.9027 -6.4599 -1.2666 18 7 11.0401 -7.2553 -0.2284 19 14 12.4114 -5.8638 -2.1928 20 1 11.9895 -4.9855 -3.3134 21 1 13.2893 -5.1005 -1.2698 22 1 13.1551 -7.0311 -2.7310 23 6 6.5799 -6.6917 -2.5736 24 6 5.9607 -7.9060 -2.3076 25 6 5.3223 -8.5910 -3.3228 26 6 5.3042 -8.0717 -4.6043 27 6 5.9251 -6.8659 -4.8738 28 6 6.5651 -6.1760 -3.8629 29 6 3.2125 -1.4396 0.7860 30 8 2.0286 -0.7158 1.1412 31 1 -0.3633 0.5039 0.8957 32 1 -0.3633 0.5237 -0.8842 33 1 -0.3633 -1.0276 -0.0114 34 1 2.1516 -0.1202 -2.0990 35 1 1.4506 -1.6422 -1.4503 36 1 5.5672 -4.0745 -2.7575 37 1 4.6561 -5.0329 -1.5661 38 1 8.4851 -6.2196 0.1132 39 1 8.3866 -7.6359 -0.9604 40 1 11.9249 -7.5327 0.0563 41 1 5.9749 -8.3122 -1.3070 42 1 4.8371 -9.5334 -3.1157 43 1 4.8046 -8.6095 -5.3966 44 1 5.9094 -6.4632 -5.8758 45 1 7.0495 -5.2341 -4.0739 46 1 3.0650 -2.5035 0.9709 47 1 4.0578 -1.0752 1.3699 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000784281994.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:26:15 Heat of formation + Delta-G solvation = -132.200188 kcal Electronic energy + Delta-G solvation = -30427.509230 eV Core-core repulsion = 26154.803974 eV Total energy + Delta-G solvation = -4272.705256 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.05886 -40.02798 -39.30010 -38.15552 -36.49562 -34.93620 -32.85941 -32.75986 -32.24311 -30.81146 -29.59189 -29.12198 -26.86740 -26.33172 -24.14946 -22.97008 -22.53821 -22.11296 -21.58430 -20.56174 -19.26622 -17.98352 -17.50792 -17.41779 -16.69387 -16.43666 -16.31014 -15.99714 -15.61516 -15.31039 -15.03942 -14.71926 -14.41037 -14.27376 -14.07443 -13.88657 -13.37042 -13.21779 -13.01483 -12.84083 -12.77840 -12.54429 -12.37154 -12.26682 -12.21012 -11.66063 -11.54900 -11.44940 -11.29488 -11.28508 -11.14166 -10.89349 -10.76410 -10.73697 -10.67754 -10.23339 -9.82352 -9.80324 -9.46970 -8.76543 -8.69144 -8.50262 -7.80363 -6.11941 -4.16465 1.46506 1.56876 1.95931 2.24577 3.03445 3.26601 3.34013 3.37254 3.40029 3.65985 3.86448 3.94211 4.37388 4.39773 4.47258 4.60232 4.69221 4.74312 4.80997 4.98957 5.07764 5.11262 5.15844 5.21252 5.23707 5.28085 5.28856 5.30806 5.38889 5.51766 5.58708 5.60171 5.73101 5.74088 5.83673 5.92838 6.18102 6.22637 6.52417 6.64897 6.65993 6.68926 6.85652 7.10786 7.23074 7.33809 7.52789 7.83091 8.09989 8.14763 8.66911 8.87389 9.48177 10.96605 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.011194 B = 0.002826 C = 0.002429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2500.650510 B = 9905.475299 C =11525.393331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.075 3.925 3 H 0.076 0.924 4 C -0.135 4.135 5 C -0.119 4.119 6 H 0.127 0.873 7 C 0.472 3.528 8 O -0.503 6.503 9 O -0.327 6.327 10 C 0.050 3.950 11 C 0.514 3.486 12 O -0.502 6.502 13 N -0.555 5.555 14 C 0.250 3.750 15 C -0.526 4.526 16 H 0.059 0.941 17 C 0.063 3.937 18 N -0.893 5.893 19 Si 0.900 3.100 20 H -0.273 1.273 21 H -0.282 1.282 22 H -0.283 1.283 23 C 0.153 3.847 24 C -0.122 4.122 25 C -0.108 4.108 26 C -0.131 4.131 27 C -0.108 4.108 28 C -0.127 4.127 29 C 0.067 3.933 30 O -0.375 6.375 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.064 0.936 34 H 0.093 0.907 35 H 0.095 0.905 36 H 0.099 0.901 37 H 0.096 0.904 38 H 0.049 0.951 39 H 0.039 0.961 40 H 0.264 0.736 41 H 0.126 0.874 42 H 0.123 0.877 43 H 0.120 0.880 44 H 0.122 0.878 45 H 0.123 0.877 46 H 0.077 0.923 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.754 7.941 -5.052 21.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.018 3.982 3 H 0.094 0.906 4 C -0.173 4.173 5 C -0.138 4.138 6 H 0.145 0.855 7 C 0.314 3.686 8 O -0.390 6.390 9 O -0.241 6.241 10 C -0.027 4.027 11 C 0.300 3.700 12 O -0.375 6.375 13 N -0.285 5.285 14 C 0.133 3.867 15 C -0.565 4.565 16 H 0.077 0.923 17 C -0.140 4.140 18 N -0.532 5.532 19 Si 0.727 3.273 20 H -0.198 1.198 21 H -0.208 1.208 22 H -0.209 1.209 23 C 0.061 3.939 24 C -0.142 4.142 25 C -0.127 4.127 26 C -0.150 4.150 27 C -0.126 4.126 28 C -0.146 4.146 29 C -0.010 4.010 30 O -0.295 6.295 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.083 0.917 34 H 0.111 0.889 35 H 0.114 0.886 36 H 0.117 0.883 37 H 0.114 0.886 38 H 0.067 0.933 39 H 0.057 0.943 40 H 0.074 0.926 41 H 0.144 0.856 42 H 0.141 0.859 43 H 0.138 0.862 44 H 0.140 0.860 45 H 0.141 0.859 46 H 0.095 0.905 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -19.508 8.046 -4.489 21.575 hybrid contribution 1.251 0.004 -0.973 1.585 sum -18.257 8.050 -5.462 20.687 Atomic orbital electron populations 1.21887 0.93258 1.03127 1.02589 1.23018 0.95351 0.95641 0.84209 0.90612 1.23342 0.93224 1.01922 0.98777 1.22627 0.99900 0.94201 0.97061 0.85549 1.23245 0.78605 0.85426 0.81327 1.90680 1.54735 1.64299 1.29326 1.86549 1.39785 1.38399 1.59413 1.22945 0.97221 0.85134 0.97405 1.19715 0.85462 0.81516 0.83322 1.90741 1.59567 1.55112 1.32097 1.45892 1.28464 1.19211 1.34897 1.19510 0.78629 0.94073 0.94516 1.21370 0.90611 1.30140 1.14372 0.92275 1.24909 0.98997 0.94946 0.95111 1.69928 1.23619 1.34459 1.25216 0.86409 0.82534 0.78550 0.79761 1.19763 1.20775 1.20887 1.17796 0.94476 0.93365 0.88270 1.21316 0.97602 0.95189 1.00088 1.20991 0.99361 0.99549 0.92807 1.21094 1.00763 0.96305 0.96791 1.20983 0.97723 0.95239 0.98676 1.21375 0.99977 1.01444 0.91829 1.23034 0.88702 0.97800 0.91485 1.88458 1.42252 1.64981 1.33829 0.91611 0.91024 0.91724 0.88875 0.88643 0.88289 0.88552 0.93299 0.94273 0.92629 0.85567 0.85914 0.86224 0.85978 0.85896 0.90506 0.89303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.63 37.16 0.36 -0.65 16 2 C 0.07 0.60 4.07 -25.70 -0.10 0.50 16 3 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 4 C -0.14 -1.14 5.65 -24.48 -0.14 -1.28 16 5 C -0.12 -1.18 3.50 -89.82 -0.31 -1.50 16 6 H 0.13 1.03 8.14 -51.93 -0.42 0.60 16 7 C 0.47 6.35 7.13 36.01 0.26 6.60 16 8 O -0.50 -7.56 15.51 -18.76 -0.29 -7.85 16 9 O -0.33 -5.22 9.74 -45.89 -0.45 -5.67 16 10 C 0.05 0.82 4.62 36.01 0.17 0.99 16 11 C 0.51 10.73 7.62 -10.99 -0.08 10.65 16 12 O -0.50 -12.46 16.13 -14.05 -0.23 -12.69 16 13 N -0.55 -11.76 2.51 -114.74 -0.29 -12.05 16 14 C 0.25 6.41 5.07 -5.19 -0.03 6.38 16 15 C -0.53 -14.74 9.39 -34.44 -0.32 -15.07 16 16 H 0.06 1.66 7.81 -52.48 -0.41 1.25 16 17 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 18 N -0.89 -26.16 13.29 55.43 0.74 -25.43 16 19 Si 0.90 21.77 29.54 -169.99 -5.02 16.75 16 20 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 23 C 0.15 2.72 4.42 -83.69 -0.37 2.35 16 24 C -0.12 -1.91 9.64 -39.39 -0.38 -2.29 16 25 C -0.11 -1.40 10.04 -39.61 -0.40 -1.79 16 26 C -0.13 -1.59 10.04 -39.55 -0.40 -1.99 16 27 C -0.11 -1.41 10.04 -39.61 -0.40 -1.81 16 28 C -0.13 -2.01 8.46 -39.39 -0.33 -2.35 16 29 C 0.07 0.69 7.38 37.88 0.28 0.97 16 30 O -0.38 -4.06 11.04 -35.23 -0.39 -4.45 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.10 0.92 7.39 -51.93 -0.38 0.53 16 36 H 0.10 1.50 6.99 -51.93 -0.36 1.14 16 37 H 0.10 1.44 8.02 -51.93 -0.42 1.03 16 38 H 0.05 1.39 7.49 -51.93 -0.39 1.00 16 39 H 0.04 1.02 7.83 -51.93 -0.41 0.61 16 40 H 0.26 7.28 8.31 -40.82 -0.34 6.95 16 41 H 0.13 1.91 8.06 -52.49 -0.42 1.49 16 42 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 43 H 0.12 1.12 8.06 -52.48 -0.42 0.69 16 44 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 45 H 0.12 1.95 7.92 -52.49 -0.42 1.53 16 46 H 0.08 0.85 7.81 -51.93 -0.41 0.44 16 47 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 400.02 15.07 6.03 6.03 Total: -1.00 -33.90 400.02 -9.18 -43.08 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: -6.98 Total: 0.88 kcal Atomic # 6 Polarization: 3.70 SS G_CDS: -2.30 Total: 1.40 kcal Atomic # 7 Polarization: -37.92 SS G_CDS: 0.45 Total: -37.47 kcal Atomic # 8 Polarization: -29.30 SS G_CDS: -1.35 Total: -30.66 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -33.90 -9.18 -43.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784281994.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.122 kcal (2) G-P(sol) polarization free energy of solvation -33.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds