Wall clock time and date at job start Wed Apr 1 2020 05:26:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08993 * 110.27645 * 2 1 4 4 C 1.54948 * 110.39239 * 237.85305 * 2 1 3 5 5 C 1.55304 * 100.94183 * 204.59912 * 4 2 1 6 6 H 1.08991 * 111.02403 * 275.86139 * 5 4 2 7 7 C 1.50702 * 110.84722 * 152.32269 * 5 4 2 8 8 O 1.20836 * 119.99957 * 5.71405 * 7 5 4 9 9 O 1.34232 * 120.00307 * 185.71547 * 7 5 4 10 10 C 1.45197 * 117.00210 * 179.97438 * 9 7 5 11 11 C 1.50700 * 109.46934 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00322 * 354.74090 * 11 10 9 13 13 N 1.34775 * 119.99697 * 174.73937 * 11 10 9 14 14 C 1.46499 * 120.00178 * 184.45324 * 13 11 10 15 15 C 1.50699 * 109.47470 * 270.00151 * 14 13 11 16 16 H 1.08004 * 119.99459 * 359.97438 * 15 14 13 17 17 C 1.37876 * 120.00116 * 179.97438 * 15 14 13 18 18 N 1.31508 * 120.00113 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99674 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47342 * 0.02562 * 19 17 15 21 21 H 1.48496 * 109.47143 * 120.00287 * 19 17 15 22 22 H 1.48501 * 109.46933 * 239.99977 * 19 17 15 23 23 C 1.39929 * 120.00161 * 4.45222 * 13 11 10 24 24 C 1.38870 * 120.06855 * 246.72744 * 23 13 11 25 25 C 1.38119 * 119.92811 * 179.72550 * 24 23 13 26 26 C 1.38276 * 120.06634 * 0.27305 * 25 24 23 27 27 C 1.38284 * 120.14831 * 0.02562 * 26 25 24 28 28 C 1.38114 * 120.06556 * 359.97438 * 27 26 25 29 29 C 1.54382 * 102.25396 * 34.13737 * 5 4 2 30 30 O 1.43236 * 107.58513 * 338.64006 * 29 5 4 31 31 H 1.09000 * 109.46712 * 299.35953 * 1 2 3 32 32 H 1.09003 * 109.46949 * 59.36053 * 1 2 3 33 33 H 1.09002 * 109.47066 * 179.36386 * 1 2 3 34 34 H 1.09003 * 111.12411 * 86.67608 * 4 2 1 35 35 H 1.09001 * 111.12630 * 322.51723 * 4 2 1 36 36 H 1.09001 * 109.47039 * 59.99780 * 10 9 7 37 37 H 1.08997 * 109.47138 * 300.00251 * 10 9 7 38 38 H 1.09006 * 109.46709 * 30.00092 * 14 13 11 39 39 H 1.08998 * 109.47384 * 149.99848 * 14 13 11 40 40 H 0.97002 * 119.99794 * 179.97438 * 18 17 15 41 41 H 1.07997 * 120.03809 * 359.97438 * 24 23 13 42 42 H 1.07998 * 119.96505 * 180.25636 * 25 24 23 43 43 H 1.08006 * 119.92803 * 179.97438 * 26 25 24 44 44 H 1.07999 * 119.96810 * 179.97438 * 27 26 25 45 45 H 1.07997 * 120.03528 * 180.02562 * 28 27 26 46 46 H 1.08995 * 109.83398 * 98.15527 * 29 5 4 47 47 H 1.09002 * 109.82812 * 219.13362 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9077 1.0224 0.0000 4 6 2.0699 -0.7728 -1.2297 5 6 3.4722 -1.2002 -0.7169 6 1 4.2014 -0.4033 -0.8625 7 6 3.9261 -2.4691 -1.3914 8 8 3.2662 -2.9489 -2.2827 9 8 5.0634 -3.0664 -1.0021 10 6 5.4387 -4.2854 -1.6958 11 6 6.7329 -4.8085 -1.1278 12 8 7.3337 -4.1641 -0.2943 13 7 7.2226 -5.9924 -1.5460 14 6 8.4277 -6.5473 -0.9248 15 6 9.6450 -6.0660 -1.6716 16 1 9.5321 -5.4124 -2.5240 17 6 10.9027 -6.4599 -1.2666 18 7 11.0401 -7.2553 -0.2284 19 14 12.4114 -5.8638 -2.1928 20 1 11.9895 -4.9855 -3.3134 21 1 13.2893 -5.1005 -1.2698 22 1 13.1551 -7.0311 -2.7310 23 6 6.5799 -6.6917 -2.5736 24 6 5.9607 -7.9060 -2.3076 25 6 5.3223 -8.5910 -3.3228 26 6 5.3042 -8.0717 -4.6043 27 6 5.9251 -6.8659 -4.8738 28 6 6.5651 -6.1760 -3.8629 29 6 3.2125 -1.4396 0.7860 30 8 2.0286 -0.7158 1.1412 31 1 -0.3633 0.5039 0.8957 32 1 -0.3633 0.5237 -0.8842 33 1 -0.3633 -1.0276 -0.0114 34 1 2.1516 -0.1202 -2.0990 35 1 1.4506 -1.6422 -1.4503 36 1 5.5672 -4.0745 -2.7575 37 1 4.6561 -5.0329 -1.5661 38 1 8.4851 -6.2196 0.1132 39 1 8.3866 -7.6359 -0.9604 40 1 11.9249 -7.5327 0.0563 41 1 5.9749 -8.3122 -1.3070 42 1 4.8371 -9.5334 -3.1157 43 1 4.8046 -8.6095 -5.3966 44 1 5.9094 -6.4632 -5.8758 45 1 7.0495 -5.2341 -4.0739 46 1 3.0650 -2.5035 0.9709 47 1 4.0578 -1.0752 1.3699 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000784281994.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:26:14 Heat of formation + Delta-G solvation = -151.198204 kcal Electronic energy + Delta-G solvation = -30428.333046 eV Core-core repulsion = 26154.803974 eV Total energy + Delta-G solvation = -4273.529072 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.18608 -41.38985 -40.22235 -39.51623 -37.72443 -36.58644 -34.85487 -33.64559 -32.92486 -31.95727 -31.16462 -30.43705 -28.57455 -27.11007 -25.41448 -24.60543 -23.78467 -23.37610 -22.23936 -21.58954 -20.72887 -19.04348 -18.91051 -18.67198 -18.40084 -17.55391 -17.49595 -17.31045 -17.04442 -16.49081 -16.37624 -16.06130 -15.65000 -15.45119 -15.22060 -14.83977 -14.62839 -14.53190 -14.33407 -14.13060 -13.88972 -13.64076 -13.47798 -13.40782 -13.39381 -13.06920 -12.93629 -12.71123 -12.49281 -12.39958 -12.22917 -12.19733 -12.16845 -12.03656 -11.92216 -11.75329 -11.74581 -11.12160 -10.69851 -10.57342 -10.22324 -9.87465 -9.32567 -8.28075 -6.42253 0.28507 0.45798 0.88236 1.05130 1.33359 1.35744 1.41584 1.48967 2.15279 2.36274 2.71386 2.81025 3.02497 3.07337 3.26648 3.49026 3.67960 3.82153 3.84882 3.88668 4.00154 4.04875 4.08029 4.16650 4.28780 4.40871 4.55703 4.58465 4.60078 4.64650 4.67586 4.75866 4.84993 4.91648 4.94858 5.03782 5.10227 5.12063 5.14901 5.30817 5.33136 5.49399 5.58693 5.61072 5.68694 5.93990 5.95628 6.00921 6.37705 6.52849 6.63957 7.05200 7.28273 8.79858 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.011194 B = 0.002826 C = 0.002429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2500.650510 B = 9905.475299 C =11525.393331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.070 3.930 3 H 0.095 0.905 4 C -0.129 4.129 5 C -0.115 4.115 6 H 0.150 0.850 7 C 0.473 3.527 8 O -0.518 6.518 9 O -0.344 6.344 10 C 0.067 3.933 11 C 0.508 3.492 12 O -0.556 6.556 13 N -0.555 5.555 14 C 0.267 3.733 15 C -0.542 4.542 16 H 0.052 0.948 17 C 0.011 3.989 18 N -0.925 5.925 19 Si 0.968 3.032 20 H -0.268 1.268 21 H -0.278 1.278 22 H -0.269 1.269 23 C 0.114 3.886 24 C -0.137 4.137 25 C -0.103 4.103 26 C -0.117 4.117 27 C -0.103 4.103 28 C -0.139 4.139 29 C 0.066 3.934 30 O -0.394 6.394 31 H 0.066 0.934 32 H 0.092 0.908 33 H 0.054 0.946 34 H 0.115 0.885 35 H 0.081 0.919 36 H 0.114 0.886 37 H 0.112 0.888 38 H 0.009 0.991 39 H 0.028 0.972 40 H 0.269 0.731 41 H 0.118 0.882 42 H 0.155 0.845 43 H 0.161 0.839 44 H 0.154 0.846 45 H 0.115 0.885 46 H 0.063 0.937 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.208 8.304 -8.012 24.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.014 3.986 3 H 0.113 0.887 4 C -0.166 4.166 5 C -0.134 4.134 6 H 0.168 0.832 7 C 0.317 3.683 8 O -0.406 6.406 9 O -0.260 6.260 10 C -0.009 4.009 11 C 0.296 3.704 12 O -0.433 6.433 13 N -0.283 5.283 14 C 0.147 3.853 15 C -0.580 4.580 16 H 0.070 0.930 17 C -0.189 4.189 18 N -0.565 5.565 19 Si 0.792 3.208 20 H -0.192 1.192 21 H -0.204 1.204 22 H -0.194 1.194 23 C 0.023 3.977 24 C -0.156 4.156 25 C -0.121 4.121 26 C -0.135 4.135 27 C -0.121 4.121 28 C -0.159 4.159 29 C -0.011 4.011 30 O -0.314 6.314 31 H 0.085 0.915 32 H 0.111 0.889 33 H 0.073 0.927 34 H 0.134 0.866 35 H 0.100 0.900 36 H 0.132 0.868 37 H 0.129 0.871 38 H 0.027 0.973 39 H 0.046 0.954 40 H 0.078 0.922 41 H 0.136 0.864 42 H 0.173 0.827 43 H 0.179 0.821 44 H 0.172 0.828 45 H 0.133 0.867 46 H 0.081 0.919 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -21.011 8.390 -7.487 23.831 hybrid contribution 1.587 -0.176 -0.089 1.599 sum -19.424 8.214 -7.576 22.409 Atomic orbital electron populations 1.21913 0.92283 1.02851 1.03701 1.23267 0.96197 0.96125 0.83032 0.88691 1.23366 0.91665 1.01839 0.99764 1.22794 1.01358 0.92812 0.96401 0.83247 1.23909 0.77444 0.85869 0.81094 1.90663 1.54868 1.64879 1.30193 1.86567 1.41233 1.38255 1.59901 1.22675 0.94860 0.85912 0.97490 1.20472 0.86523 0.80951 0.82422 1.90695 1.61410 1.56716 1.34504 1.45675 1.27459 1.19612 1.35537 1.18937 0.80463 0.93237 0.92627 1.21597 0.91855 1.30179 1.14369 0.92995 1.25818 1.02140 0.94955 0.95959 1.70038 1.24614 1.35355 1.26489 0.85362 0.78517 0.78439 0.78489 1.19214 1.20417 1.19386 1.18067 0.96732 0.94711 0.88161 1.21417 0.98491 0.94805 1.00931 1.21375 0.98105 1.00227 0.92392 1.21600 0.99021 0.95566 0.97297 1.21364 0.96333 0.95241 0.99162 1.21423 1.00987 1.01726 0.91752 1.22990 0.88953 0.97164 0.91951 1.88447 1.42313 1.65327 1.35320 0.91496 0.88895 0.92733 0.86636 0.89986 0.86796 0.87063 0.97327 0.95365 0.92221 0.86362 0.82742 0.82147 0.82841 0.86725 0.91915 0.88855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 9.63 71.98 0.69 -1.06 16 2 C 0.07 1.01 4.07 31.26 0.13 1.14 16 3 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 4 C -0.13 -1.94 5.65 32.05 0.18 -1.76 16 5 C -0.11 -2.17 3.50 -10.28 -0.04 -2.20 16 6 H 0.15 2.15 8.14 -2.39 -0.02 2.13 16 7 C 0.47 12.56 7.13 71.24 0.51 13.06 16 8 O -0.52 -15.13 15.51 21.93 0.34 -14.79 16 9 O -0.34 -11.23 9.74 -45.10 -0.44 -11.67 16 10 C 0.07 2.27 4.62 71.24 0.33 2.60 16 11 C 0.51 22.49 7.62 87.66 0.67 23.15 16 12 O -0.56 -29.58 16.13 15.70 0.25 -29.32 16 13 N -0.55 -24.88 2.51 -635.31 -1.59 -26.48 16 14 C 0.27 14.62 5.07 85.63 0.43 15.05 16 15 C -0.54 -31.62 9.39 25.60 0.24 -31.38 16 16 H 0.05 3.03 7.81 -2.91 -0.02 3.01 16 17 C 0.01 0.62 5.46 84.66 0.46 1.08 16 18 N -0.93 -55.88 13.29 21.45 0.28 -55.60 16 19 Si 0.97 45.21 29.54 68.60 2.03 47.24 16 20 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 21 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 22 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 23 C 0.11 4.13 4.42 38.15 0.17 4.30 16 24 C -0.14 -4.27 9.64 22.39 0.22 -4.05 16 25 C -0.10 -2.36 10.04 22.25 0.22 -2.13 16 26 C -0.12 -2.34 10.04 22.29 0.22 -2.12 16 27 C -0.10 -2.37 10.04 22.25 0.22 -2.15 16 28 C -0.14 -4.34 8.46 22.39 0.19 -4.15 16 29 C 0.07 1.37 7.38 72.45 0.53 1.91 16 30 O -0.39 -8.27 11.04 -148.98 -1.64 -9.92 16 31 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.08 1.48 7.39 -2.39 -0.02 1.46 16 36 H 0.11 3.47 6.99 -2.39 -0.02 3.46 16 37 H 0.11 3.38 8.02 -2.39 -0.02 3.36 16 38 H 0.01 0.54 7.49 -2.38 -0.02 0.52 16 39 H 0.03 1.58 7.83 -2.39 -0.02 1.56 16 40 H 0.27 15.14 8.31 -92.71 -0.77 14.36 16 41 H 0.12 3.75 8.06 -2.91 -0.02 3.73 16 42 H 0.15 2.54 8.06 -2.91 -0.02 2.52 16 43 H 0.16 1.99 8.06 -2.91 -0.02 1.97 16 44 H 0.15 2.57 8.06 -2.91 -0.02 2.54 16 45 H 0.11 3.67 7.92 -2.91 -0.02 3.64 16 46 H 0.06 1.45 7.81 -2.39 -0.02 1.43 16 47 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 Total: -1.00 -77.74 400.02 5.58 -72.16 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: 0.97 Total: 17.09 kcal Atomic # 6 Polarization: 5.90 SS G_CDS: 5.39 Total: 11.28 kcal Atomic # 7 Polarization: -80.76 SS G_CDS: -1.31 Total: -82.07 kcal Atomic # 8 Polarization: -64.21 SS G_CDS: -1.49 Total: -65.70 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.24 kcal Total: -77.74 5.58 -72.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784281994.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.038 kcal (2) G-P(sol) polarization free energy of solvation -77.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds