Wall clock time and date at job start Wed Apr 1 2020 05:26:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 110.27478 * 2 1 4 4 C 1.54948 * 110.30838 * 122.09568 * 2 1 3 5 5 C 1.55309 * 100.94169 * 155.36041 * 4 2 1 6 6 H 1.08994 * 110.84592 * 84.05780 * 5 4 2 7 7 C 1.50698 * 110.84451 * 207.47079 * 5 4 2 8 8 O 1.20829 * 120.00272 * 357.22864 * 7 5 4 9 9 O 1.34233 * 119.99699 * 177.22608 * 7 5 4 10 10 C 1.45203 * 116.99907 * 180.02562 * 9 7 5 11 11 C 1.50695 * 109.47101 * 180.02562 * 10 9 7 12 12 O 1.21280 * 120.00022 * 359.97438 * 11 10 9 13 13 N 1.34780 * 119.99924 * 180.02562 * 11 10 9 14 14 C 1.46501 * 120.00010 * 355.25551 * 13 11 10 15 15 C 1.50705 * 109.46590 * 90.00751 * 14 13 11 16 16 H 1.08000 * 120.00141 * 0.02562 * 15 14 13 17 17 C 1.37877 * 119.99580 * 179.97438 * 15 14 13 18 18 N 1.31514 * 119.99710 * 179.97438 * 17 15 14 19 19 Si 1.86805 * 120.00065 * 0.02562 * 17 15 14 20 20 H 1.48496 * 109.46928 * 89.99903 * 19 17 15 21 21 H 1.48504 * 109.46794 * 209.99867 * 19 17 15 22 22 H 1.48500 * 109.47132 * 329.99766 * 19 17 15 23 23 C 1.39929 * 119.99995 * 175.26770 * 13 11 10 24 24 C 1.38873 * 120.06484 * 291.84576 * 23 13 11 25 25 C 1.38118 * 119.92427 * 179.72400 * 24 23 13 26 26 C 1.38280 * 120.06756 * 0.53022 * 25 24 23 27 27 C 1.38281 * 120.14705 * 359.76372 * 26 25 24 28 28 C 1.38110 * 120.06570 * 359.95990 * 27 26 25 29 29 C 1.54378 * 102.24942 * 325.86138 * 5 4 2 30 30 O 1.43238 * 107.58869 * 21.36211 * 29 5 4 31 31 H 1.09001 * 109.47195 * 297.90974 * 1 2 3 32 32 H 1.08997 * 109.47308 * 57.90549 * 1 2 3 33 33 H 1.09003 * 109.47223 * 177.90736 * 1 2 3 34 34 H 1.08995 * 111.12970 * 37.43563 * 4 2 1 35 35 H 1.09002 * 111.15721 * 273.29335 * 4 2 1 36 36 H 1.09002 * 109.46818 * 300.00038 * 10 9 7 37 37 H 1.09001 * 109.47083 * 59.99493 * 10 9 7 38 38 H 1.08996 * 109.47089 * 210.00387 * 14 13 11 39 39 H 1.08995 * 109.47368 * 330.00961 * 14 13 11 40 40 H 0.97002 * 119.99928 * 179.97438 * 18 17 15 41 41 H 1.07996 * 120.03549 * 359.97438 * 24 23 13 42 42 H 1.07998 * 119.96408 * 180.25253 * 25 24 23 43 43 H 1.08005 * 119.92455 * 179.74880 * 26 25 24 44 44 H 1.07995 * 119.96386 * 179.97438 * 27 26 25 45 45 H 1.08002 * 120.03688 * 180.02562 * 28 27 26 46 46 H 1.09003 * 109.82652 * 140.87060 * 29 5 4 47 47 H 1.09001 * 109.83090 * 261.84250 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9077 1.0225 0.0000 4 6 2.0677 -0.7721 1.2311 5 6 3.4699 -1.2020 0.7200 6 1 4.1973 -0.4034 0.8654 7 6 3.9236 -2.4679 1.4000 8 8 3.2374 -2.9728 2.2568 9 8 5.0902 -3.0347 1.0538 10 6 5.4635 -4.2529 1.7502 11 6 6.7925 -4.7399 1.2331 12 8 7.3682 -4.1215 0.3631 13 7 7.3410 -5.8633 1.7369 14 6 6.6977 -6.5536 2.8576 15 6 5.7202 -7.5704 2.3267 16 1 5.5913 -7.6906 1.2612 17 6 4.9911 -8.3478 3.2014 18 7 4.1377 -9.2347 2.7382 19 14 5.2146 -8.1403 5.0444 20 1 4.2605 -7.1193 5.5468 21 1 4.9563 -9.4356 5.7232 22 1 6.6045 -7.7012 5.3282 23 6 8.5249 -6.3701 1.1896 24 6 8.5275 -6.8976 -0.0950 25 6 9.6990 -7.3919 -0.6345 26 6 10.8658 -7.3719 0.1073 27 6 10.8652 -6.8530 1.3890 28 6 9.6983 -6.3520 1.9320 29 6 3.2111 -1.4427 -0.7828 30 8 2.0285 -0.7178 -1.1400 31 1 -0.3633 0.4810 0.9081 32 1 -0.3634 0.5460 -0.8706 33 1 -0.3634 -1.0270 -0.0375 34 1 1.4470 -1.6403 1.4522 35 1 2.1495 -0.1192 2.1000 36 1 5.5414 -4.0513 2.8186 37 1 4.7046 -5.0164 1.5789 38 1 7.4558 -7.0571 3.4575 39 1 6.1681 -5.8284 3.4753 40 1 3.6250 -9.7820 3.3535 41 1 7.6155 -6.9175 -0.6731 42 1 9.7027 -7.7984 -1.6350 43 1 11.7797 -7.7627 -0.3154 44 1 11.7781 -6.8392 1.9658 45 1 9.6984 -5.9464 2.9330 46 1 4.0574 -1.0803 -1.3664 47 1 3.0623 -2.5068 -0.9666 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000784281995.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:26:17 Heat of formation + Delta-G solvation = -129.659568 kcal Electronic energy + Delta-G solvation = -30471.268402 eV Core-core repulsion = 26198.673316 eV Total energy + Delta-G solvation = -4272.595086 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.90949 -40.05447 -39.21560 -38.01968 -36.31273 -35.26733 -32.73455 -32.68804 -32.14890 -30.62215 -30.38895 -28.41562 -27.52231 -26.32465 -24.04018 -22.95729 -22.30186 -21.95524 -21.48648 -20.41122 -19.20555 -17.91170 -17.33314 -17.20155 -16.84902 -16.74092 -16.20119 -16.02006 -15.72791 -15.32463 -15.07892 -14.63731 -14.30509 -14.12755 -13.99689 -13.85618 -13.40011 -13.11082 -12.93460 -12.75813 -12.64098 -12.55282 -12.33959 -12.32906 -12.16229 -11.97032 -11.54586 -11.49295 -11.32893 -11.20108 -11.18438 -10.86612 -10.83865 -10.57871 -10.53089 -10.39835 -9.77069 -9.73401 -9.46025 -8.82627 -8.75987 -8.61042 -7.85981 -6.30908 -4.35032 1.60782 1.73038 2.13553 2.36211 2.94286 3.12707 3.18622 3.21606 3.45006 3.64114 3.97354 4.09649 4.18561 4.48860 4.57607 4.70560 4.84277 4.89286 4.92429 4.99187 5.09684 5.20972 5.23745 5.33110 5.37980 5.38691 5.40381 5.46216 5.61525 5.65960 5.68442 5.71380 5.83898 5.86315 5.87966 5.95020 6.25697 6.33070 6.39172 6.46671 6.65293 6.73775 6.78694 6.85771 7.00637 7.28280 7.41346 7.69704 7.77364 8.22662 8.56323 8.73140 9.26250 10.81228 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.009675 B = 0.003169 C = 0.002577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2893.432612 B = 8834.735110 C =10860.987449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.076 3.924 3 H 0.075 0.925 4 C -0.137 4.137 5 C -0.117 4.117 6 H 0.124 0.876 7 C 0.470 3.530 8 O -0.495 6.495 9 O -0.334 6.334 10 C 0.054 3.946 11 C 0.527 3.473 12 O -0.532 6.532 13 N -0.551 5.551 14 C 0.206 3.794 15 C -0.550 4.550 16 H 0.081 0.919 17 C 0.082 3.918 18 N -0.884 5.884 19 Si 0.868 3.132 20 H -0.270 1.270 21 H -0.280 1.280 22 H -0.263 1.263 23 C 0.171 3.829 24 C -0.100 4.100 25 C -0.112 4.112 26 C -0.131 4.131 27 C -0.115 4.115 28 C -0.124 4.124 29 C 0.067 3.933 30 O -0.376 6.376 31 H 0.071 0.929 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.097 0.903 35 H 0.092 0.908 36 H 0.100 0.900 37 H 0.122 0.878 38 H 0.042 0.958 39 H 0.033 0.967 40 H 0.269 0.731 41 H 0.122 0.878 42 H 0.122 0.878 43 H 0.119 0.881 44 H 0.121 0.879 45 H 0.121 0.879 46 H 0.087 0.913 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.216 14.420 -2.452 14.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.019 3.981 3 H 0.093 0.907 4 C -0.175 4.175 5 C -0.136 4.136 6 H 0.141 0.859 7 C 0.311 3.689 8 O -0.382 6.382 9 O -0.249 6.249 10 C -0.023 4.023 11 C 0.315 3.685 12 O -0.409 6.409 13 N -0.280 5.280 14 C 0.086 3.914 15 C -0.588 4.588 16 H 0.099 0.901 17 C -0.123 4.123 18 N -0.520 5.520 19 Si 0.694 3.306 20 H -0.195 1.195 21 H -0.206 1.206 22 H -0.188 1.188 23 C 0.080 3.920 24 C -0.120 4.120 25 C -0.131 4.131 26 C -0.149 4.149 27 C -0.133 4.133 28 C -0.144 4.144 29 C -0.010 4.010 30 O -0.295 6.295 31 H 0.090 0.910 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.116 0.884 35 H 0.111 0.889 36 H 0.118 0.882 37 H 0.140 0.860 38 H 0.060 0.940 39 H 0.051 0.949 40 H 0.079 0.921 41 H 0.140 0.860 42 H 0.140 0.860 43 H 0.137 0.863 44 H 0.139 0.861 45 H 0.139 0.861 46 H 0.105 0.895 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.055 14.424 -2.765 14.830 hybrid contribution 0.039 -0.410 1.529 1.584 sum 2.094 14.014 -1.235 14.223 Atomic orbital electron populations 1.21891 0.93283 1.03295 1.02454 1.23001 0.95365 0.95486 0.84283 0.90711 1.23364 0.93400 1.02026 0.98672 1.22589 0.99805 0.94254 0.96995 0.85854 1.23158 0.79056 0.85506 0.81178 1.90724 1.54364 1.62558 1.30525 1.86466 1.37757 1.39415 1.61273 1.22867 0.96827 0.85580 0.96996 1.19861 0.85767 0.80567 0.82354 1.90690 1.62707 1.56290 1.31188 1.45440 1.22685 1.24554 1.35306 1.20045 0.94032 0.93131 0.84176 1.21268 1.22010 1.19454 0.96048 0.90099 1.24834 0.94318 0.94391 0.98759 1.69872 1.24549 1.22174 1.35415 0.86971 0.79390 0.78531 0.85727 1.19543 1.20573 1.18804 1.17485 0.85429 0.96162 0.92876 1.21275 0.98563 0.96842 0.95274 1.20978 0.92424 0.99887 0.99766 1.21057 0.98023 1.01003 0.94830 1.20895 0.97373 0.99347 0.95704 1.21169 0.91772 1.01119 1.00330 1.23020 0.88606 0.97919 0.91434 1.88452 1.42397 1.64818 1.33862 0.91041 0.91723 0.91568 0.88412 0.88946 0.88239 0.85999 0.93965 0.94940 0.92129 0.85970 0.86043 0.86338 0.86117 0.86106 0.89514 0.90359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.62 37.16 0.36 -0.85 16 2 C 0.08 0.70 4.08 -25.71 -0.10 0.59 16 3 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 4 C -0.14 -1.35 5.67 -24.48 -0.14 -1.49 16 5 C -0.12 -1.30 3.49 -89.83 -0.31 -1.61 16 6 H 0.12 1.07 8.14 -51.93 -0.42 0.65 16 7 C 0.47 7.12 7.14 36.00 0.26 7.38 16 8 O -0.49 -8.78 15.48 -18.75 -0.29 -9.07 16 9 O -0.33 -5.70 9.76 -45.91 -0.45 -6.15 16 10 C 0.05 0.99 4.61 36.00 0.17 1.16 16 11 C 0.53 10.73 7.61 -10.99 -0.08 10.65 16 12 O -0.53 -11.80 16.27 -14.10 -0.23 -12.03 16 13 N -0.55 -11.31 2.50 -114.74 -0.29 -11.60 16 14 C 0.21 4.46 3.95 -5.19 -0.02 4.44 16 15 C -0.55 -14.19 9.71 -34.44 -0.33 -14.52 16 16 H 0.08 2.32 8.06 -52.49 -0.42 1.90 16 17 C 0.08 2.18 5.47 -17.82 -0.10 2.08 16 18 N -0.88 -25.34 13.96 55.43 0.77 -24.57 16 19 Si 0.87 19.54 27.47 -169.99 -4.67 14.87 16 20 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 21 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 22 H -0.26 -5.57 6.54 56.52 0.37 -5.20 16 23 C 0.17 3.34 4.74 -83.69 -0.40 2.94 16 24 C -0.10 -1.87 9.56 -39.39 -0.38 -2.24 16 25 C -0.11 -1.72 10.04 -39.61 -0.40 -2.12 16 26 C -0.13 -1.81 10.04 -39.55 -0.40 -2.21 16 27 C -0.11 -1.63 10.04 -39.61 -0.40 -2.03 16 28 C -0.12 -2.09 9.69 -39.40 -0.38 -2.48 16 29 C 0.07 0.77 7.40 37.88 0.28 1.05 16 30 O -0.38 -4.47 11.04 -35.23 -0.39 -4.85 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.10 1.13 7.34 -51.93 -0.38 0.75 16 35 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.10 1.69 7.25 -51.93 -0.38 1.31 16 37 H 0.12 2.42 7.91 -51.93 -0.41 2.01 16 38 H 0.04 0.91 6.92 -51.93 -0.36 0.55 16 39 H 0.03 0.66 5.90 -51.93 -0.31 0.36 16 40 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 41 H 0.12 2.36 8.06 -52.49 -0.42 1.94 16 42 H 0.12 1.54 8.06 -52.49 -0.42 1.12 16 43 H 0.12 1.27 8.06 -52.48 -0.42 0.84 16 44 H 0.12 1.35 8.06 -52.49 -0.42 0.92 16 45 H 0.12 1.86 8.06 -52.49 -0.42 1.44 16 46 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 47 H 0.08 0.98 7.81 -51.93 -0.41 0.58 16 LS Contribution 396.86 15.07 5.98 5.98 Total: -1.00 -32.17 396.86 -8.84 -41.02 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: -6.90 Total: 5.66 kcal Atomic # 6 Polarization: 3.12 SS G_CDS: -2.38 Total: 0.74 kcal Atomic # 7 Polarization: -36.66 SS G_CDS: 0.49 Total: -36.17 kcal Atomic # 8 Polarization: -30.75 SS G_CDS: -1.36 Total: -32.10 kcal Atomic # 14 Polarization: 19.54 SS G_CDS: -4.67 Total: 14.87 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -32.17 -8.84 -41.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784281995.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.642 kcal (2) G-P(sol) polarization free energy of solvation -32.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds