Wall clock time and date at job start Wed Apr 1 2020 05:26:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 110.27478 * 2 1 4 4 C 1.54948 * 110.30838 * 122.09568 * 2 1 3 5 5 C 1.55309 * 100.94169 * 155.36041 * 4 2 1 6 6 H 1.08994 * 110.84592 * 84.05780 * 5 4 2 7 7 C 1.50698 * 110.84451 * 207.47079 * 5 4 2 8 8 O 1.20829 * 120.00272 * 357.22864 * 7 5 4 9 9 O 1.34233 * 119.99699 * 177.22608 * 7 5 4 10 10 C 1.45203 * 116.99907 * 180.02562 * 9 7 5 11 11 C 1.50695 * 109.47101 * 180.02562 * 10 9 7 12 12 O 1.21280 * 120.00022 * 359.97438 * 11 10 9 13 13 N 1.34780 * 119.99924 * 180.02562 * 11 10 9 14 14 C 1.46501 * 120.00010 * 355.25551 * 13 11 10 15 15 C 1.50705 * 109.46590 * 90.00751 * 14 13 11 16 16 H 1.08000 * 120.00141 * 0.02562 * 15 14 13 17 17 C 1.37877 * 119.99580 * 179.97438 * 15 14 13 18 18 N 1.31514 * 119.99710 * 179.97438 * 17 15 14 19 19 Si 1.86805 * 120.00065 * 0.02562 * 17 15 14 20 20 H 1.48496 * 109.46928 * 89.99903 * 19 17 15 21 21 H 1.48504 * 109.46794 * 209.99867 * 19 17 15 22 22 H 1.48500 * 109.47132 * 329.99766 * 19 17 15 23 23 C 1.39929 * 119.99995 * 175.26770 * 13 11 10 24 24 C 1.38873 * 120.06484 * 291.84576 * 23 13 11 25 25 C 1.38118 * 119.92427 * 179.72400 * 24 23 13 26 26 C 1.38280 * 120.06756 * 0.53022 * 25 24 23 27 27 C 1.38281 * 120.14705 * 359.76372 * 26 25 24 28 28 C 1.38110 * 120.06570 * 359.95990 * 27 26 25 29 29 C 1.54378 * 102.24942 * 325.86138 * 5 4 2 30 30 O 1.43238 * 107.58869 * 21.36211 * 29 5 4 31 31 H 1.09001 * 109.47195 * 297.90974 * 1 2 3 32 32 H 1.08997 * 109.47308 * 57.90549 * 1 2 3 33 33 H 1.09003 * 109.47223 * 177.90736 * 1 2 3 34 34 H 1.08995 * 111.12970 * 37.43563 * 4 2 1 35 35 H 1.09002 * 111.15721 * 273.29335 * 4 2 1 36 36 H 1.09002 * 109.46818 * 300.00038 * 10 9 7 37 37 H 1.09001 * 109.47083 * 59.99493 * 10 9 7 38 38 H 1.08996 * 109.47089 * 210.00387 * 14 13 11 39 39 H 1.08995 * 109.47368 * 330.00961 * 14 13 11 40 40 H 0.97002 * 119.99928 * 179.97438 * 18 17 15 41 41 H 1.07996 * 120.03549 * 359.97438 * 24 23 13 42 42 H 1.07998 * 119.96408 * 180.25253 * 25 24 23 43 43 H 1.08005 * 119.92455 * 179.74880 * 26 25 24 44 44 H 1.07995 * 119.96386 * 179.97438 * 27 26 25 45 45 H 1.08002 * 120.03688 * 180.02562 * 28 27 26 46 46 H 1.09003 * 109.82652 * 140.87060 * 29 5 4 47 47 H 1.09001 * 109.83090 * 261.84250 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9077 1.0225 0.0000 4 6 2.0677 -0.7721 1.2311 5 6 3.4699 -1.2020 0.7200 6 1 4.1973 -0.4034 0.8654 7 6 3.9236 -2.4679 1.4000 8 8 3.2374 -2.9728 2.2568 9 8 5.0902 -3.0347 1.0538 10 6 5.4635 -4.2529 1.7502 11 6 6.7925 -4.7399 1.2331 12 8 7.3682 -4.1215 0.3631 13 7 7.3410 -5.8633 1.7369 14 6 6.6977 -6.5536 2.8576 15 6 5.7202 -7.5704 2.3267 16 1 5.5913 -7.6906 1.2612 17 6 4.9911 -8.3478 3.2014 18 7 4.1377 -9.2347 2.7382 19 14 5.2146 -8.1403 5.0444 20 1 4.2605 -7.1193 5.5468 21 1 4.9563 -9.4356 5.7232 22 1 6.6045 -7.7012 5.3282 23 6 8.5249 -6.3701 1.1896 24 6 8.5275 -6.8976 -0.0950 25 6 9.6990 -7.3919 -0.6345 26 6 10.8658 -7.3719 0.1073 27 6 10.8652 -6.8530 1.3890 28 6 9.6983 -6.3520 1.9320 29 6 3.2111 -1.4427 -0.7828 30 8 2.0285 -0.7178 -1.1400 31 1 -0.3633 0.4810 0.9081 32 1 -0.3634 0.5460 -0.8706 33 1 -0.3634 -1.0270 -0.0375 34 1 1.4470 -1.6403 1.4522 35 1 2.1495 -0.1192 2.1000 36 1 5.5414 -4.0513 2.8186 37 1 4.7046 -5.0164 1.5789 38 1 7.4558 -7.0571 3.4575 39 1 6.1681 -5.8284 3.4753 40 1 3.6250 -9.7820 3.3535 41 1 7.6155 -6.9175 -0.6731 42 1 9.7027 -7.7984 -1.6350 43 1 11.7797 -7.7627 -0.3154 44 1 11.7781 -6.8392 1.9658 45 1 9.6984 -5.9464 2.9330 46 1 4.0574 -1.0803 -1.3664 47 1 3.0623 -2.5068 -0.9666 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000784281995.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:26:17 Heat of formation + Delta-G solvation = -147.678688 kcal Electronic energy + Delta-G solvation = -30472.049770 eV Core-core repulsion = 26198.673316 eV Total energy + Delta-G solvation = -4273.376454 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.17163 -41.45974 -40.24226 -39.37433 -37.67695 -36.91503 -34.67171 -33.65607 -32.93945 -31.87112 -31.79993 -30.11862 -29.04324 -27.12741 -25.18138 -24.73304 -23.61839 -23.30372 -22.24895 -21.57632 -20.67935 -19.23410 -19.08355 -18.48277 -18.17934 -18.13568 -17.51367 -17.36259 -16.96635 -16.58027 -16.33849 -16.02633 -15.66284 -15.41938 -15.20427 -14.89981 -14.75740 -14.50444 -14.33700 -14.12113 -14.03141 -13.81311 -13.50720 -13.44548 -13.40620 -13.17902 -12.94726 -12.62779 -12.48698 -12.40419 -12.25428 -12.19839 -12.04879 -11.98738 -11.92602 -11.77783 -11.74824 -11.09562 -10.85160 -10.58080 -10.24510 -9.86043 -9.33779 -8.37133 -6.46693 0.32227 0.47906 0.89784 1.05492 1.33887 1.36295 1.36587 1.45832 2.12097 2.28285 2.70122 2.83140 2.96799 3.07159 3.34260 3.50007 3.68517 3.82000 3.87592 3.97315 4.01972 4.07648 4.10553 4.15714 4.25978 4.38494 4.40240 4.54726 4.56565 4.58080 4.63456 4.69436 4.74199 4.78646 4.83558 4.91180 5.09611 5.11120 5.14290 5.29447 5.29655 5.41129 5.52213 5.57531 5.67257 5.93023 5.98581 6.12245 6.28858 6.44004 6.57987 6.96615 7.19229 8.78924 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.009675 B = 0.003169 C = 0.002577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2893.432612 B = 8834.735110 C =10860.987449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.073 3.927 3 H 0.102 0.898 4 C -0.134 4.134 5 C -0.110 4.110 6 H 0.158 0.842 7 C 0.469 3.531 8 O -0.524 6.524 9 O -0.340 6.340 10 C 0.059 3.941 11 C 0.524 3.476 12 O -0.554 6.554 13 N -0.550 5.550 14 C 0.214 3.786 15 C -0.548 4.548 16 H 0.031 0.969 17 C 0.023 3.977 18 N -0.937 5.937 19 Si 0.936 3.064 20 H -0.263 1.263 21 H -0.281 1.281 22 H -0.233 1.233 23 C 0.128 3.872 24 C -0.133 4.133 25 C -0.115 4.115 26 C -0.120 4.120 27 C -0.106 4.106 28 C -0.135 4.135 29 C 0.067 3.933 30 O -0.394 6.394 31 H 0.092 0.908 32 H 0.069 0.931 33 H 0.048 0.952 34 H 0.074 0.926 35 H 0.117 0.883 36 H 0.117 0.883 37 H 0.099 0.901 38 H 0.055 0.945 39 H 0.052 0.948 40 H 0.270 0.730 41 H 0.093 0.907 42 H 0.144 0.856 43 H 0.161 0.839 44 H 0.162 0.838 45 H 0.134 0.866 46 H 0.102 0.898 47 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.729 16.290 -0.727 16.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.016 3.984 3 H 0.120 0.880 4 C -0.172 4.172 5 C -0.129 4.129 6 H 0.175 0.825 7 C 0.312 3.688 8 O -0.412 6.412 9 O -0.255 6.255 10 C -0.017 4.017 11 C 0.312 3.688 12 O -0.433 6.433 13 N -0.278 5.278 14 C 0.094 3.906 15 C -0.586 4.586 16 H 0.049 0.951 17 C -0.176 4.176 18 N -0.576 5.576 19 Si 0.758 3.242 20 H -0.187 1.187 21 H -0.207 1.207 22 H -0.156 1.156 23 C 0.038 3.962 24 C -0.153 4.153 25 C -0.133 4.133 26 C -0.138 4.138 27 C -0.124 4.124 28 C -0.154 4.154 29 C -0.010 4.010 30 O -0.314 6.314 31 H 0.111 0.889 32 H 0.088 0.912 33 H 0.067 0.933 34 H 0.092 0.908 35 H 0.136 0.864 36 H 0.135 0.865 37 H 0.117 0.883 38 H 0.073 0.927 39 H 0.070 0.930 40 H 0.079 0.921 41 H 0.111 0.889 42 H 0.162 0.838 43 H 0.179 0.821 44 H 0.180 0.820 45 H 0.152 0.848 46 H 0.120 0.880 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.589 16.309 -1.056 16.976 hybrid contribution -0.720 -1.025 0.828 1.501 sum 3.869 15.284 -0.228 15.768 Atomic orbital electron populations 1.21927 0.92593 1.02595 1.03814 1.23257 0.96021 0.96220 0.82860 0.88019 1.23401 0.92015 1.01706 1.00046 1.22783 1.01269 0.92668 0.96199 0.82481 1.24046 0.77911 0.86105 0.80723 1.90707 1.54842 1.63562 1.32079 1.86500 1.38927 1.38687 1.61407 1.22670 0.95152 0.85872 0.98024 1.20145 0.86111 0.80487 0.82009 1.90652 1.63498 1.57048 1.32094 1.45408 1.23246 1.24217 1.34975 1.19882 0.93446 0.92600 0.84697 1.21398 1.22895 1.20492 0.93860 0.95063 1.25772 0.93739 0.93804 1.04328 1.70038 1.26254 1.23846 1.37442 0.85883 0.81033 0.78571 0.78719 1.18732 1.20682 1.15629 1.17905 0.86051 0.98324 0.93870 1.21305 0.99094 0.99287 0.95629 1.21309 0.91906 0.99061 1.01037 1.21567 0.98637 0.99178 0.94418 1.21407 0.97758 0.97217 0.96030 1.21429 0.91643 1.01501 1.00818 1.22990 0.89152 0.96875 0.91961 1.88441 1.42532 1.65162 1.35276 0.88930 0.91182 0.93256 0.90763 0.86419 0.86483 0.88281 0.92740 0.92972 0.92084 0.88879 0.83773 0.82115 0.82048 0.84813 0.88036 0.92674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.23 9.62 71.98 0.69 -1.54 16 2 C 0.07 1.21 4.08 31.26 0.13 1.34 16 3 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 4 C -0.13 -2.47 5.67 32.05 0.18 -2.29 16 5 C -0.11 -2.33 3.49 -10.28 -0.04 -2.37 16 6 H 0.16 2.30 8.14 -2.39 -0.02 2.28 16 7 C 0.47 14.40 7.14 71.24 0.51 14.91 16 8 O -0.52 -19.00 15.48 21.96 0.34 -18.66 16 9 O -0.34 -11.92 9.76 -45.09 -0.44 -12.36 16 10 C 0.06 2.29 4.61 71.23 0.33 2.61 16 11 C 0.52 22.20 7.61 87.65 0.67 22.86 16 12 O -0.55 -25.50 16.27 15.77 0.26 -25.24 16 13 N -0.55 -23.26 2.50 -635.31 -1.59 -24.85 16 14 C 0.21 9.33 3.95 85.63 0.34 9.66 16 15 C -0.55 -29.59 9.71 25.60 0.25 -29.34 16 16 H 0.03 1.94 8.06 -2.91 -0.02 1.92 16 17 C 0.02 1.28 5.47 84.65 0.46 1.74 16 18 N -0.94 -56.16 13.96 21.45 0.30 -55.86 16 19 Si 0.94 39.96 27.47 68.60 1.88 41.85 16 20 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 21 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 22 H -0.23 -8.78 6.54 99.48 0.65 -8.13 16 23 C 0.13 5.09 4.74 38.15 0.18 5.27 16 24 C -0.13 -5.20 9.56 22.39 0.21 -4.99 16 25 C -0.11 -3.42 10.04 22.25 0.22 -3.20 16 26 C -0.12 -2.90 10.04 22.29 0.22 -2.68 16 27 C -0.11 -2.64 10.04 22.25 0.22 -2.41 16 28 C -0.13 -4.31 9.69 22.39 0.22 -4.09 16 29 C 0.07 1.53 7.40 72.45 0.54 2.07 16 30 O -0.39 -9.14 11.04 -148.98 -1.64 -10.78 16 31 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.07 1.74 7.34 -2.39 -0.02 1.72 16 35 H 0.12 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.12 4.00 7.25 -2.39 -0.02 3.98 16 37 H 0.10 4.25 7.91 -2.39 -0.02 4.23 16 38 H 0.05 2.26 6.92 -2.39 -0.02 2.25 16 39 H 0.05 2.08 5.90 -2.39 -0.01 2.07 16 40 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 41 H 0.09 4.00 8.06 -2.91 -0.02 3.98 16 42 H 0.14 3.49 8.06 -2.91 -0.02 3.46 16 43 H 0.16 2.56 8.06 -2.91 -0.02 2.53 16 44 H 0.16 2.71 8.06 -2.91 -0.02 2.68 16 45 H 0.13 3.81 8.06 -2.91 -0.02 3.79 16 46 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 47 H 0.05 1.48 7.81 -2.39 -0.02 1.46 16 Total: -1.00 -75.17 396.86 5.36 -69.82 By element: Atomic # 1 Polarization: 27.60 SS G_CDS: 0.91 Total: 28.51 kcal Atomic # 6 Polarization: 2.23 SS G_CDS: 5.34 Total: 7.57 kcal Atomic # 7 Polarization: -79.41 SS G_CDS: -1.29 Total: -80.70 kcal Atomic # 8 Polarization: -65.55 SS G_CDS: -1.49 Total: -67.04 kcal Atomic # 14 Polarization: 39.96 SS G_CDS: 1.88 Total: 41.85 kcal Total: -75.17 5.36 -69.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784281995.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.860 kcal (2) G-P(sol) polarization free energy of solvation -75.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds