Wall clock time and date at job start Wed Apr 1 2020 05:26:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 110.32507 * 2 1 4 4 C 1.54469 * 110.46500 * 237.68963 * 2 1 3 5 5 C 1.54513 * 104.06494 * 217.13807 * 4 2 1 6 6 H 1.08997 * 110.62948 * 118.69850 * 5 4 2 7 7 C 1.50696 * 110.51229 * 241.35709 * 5 4 2 8 8 O 1.20826 * 120.00048 * 356.09439 * 7 5 4 9 9 O 1.34232 * 119.99961 * 176.09549 * 7 5 4 10 10 C 1.45196 * 117.00092 * 180.02562 * 9 7 5 11 11 C 1.50704 * 109.47195 * 179.97438 * 10 9 7 12 12 O 1.21281 * 119.99776 * 354.72371 * 11 10 9 13 13 N 1.34773 * 119.99729 * 174.72952 * 11 10 9 14 14 C 1.46500 * 119.99507 * 184.69731 * 13 11 10 15 15 C 1.50702 * 109.47121 * 269.72075 * 14 13 11 16 16 H 1.07996 * 120.00028 * 359.97438 * 15 14 13 17 17 C 1.37881 * 120.00143 * 180.02562 * 15 14 13 18 18 N 1.31509 * 119.99956 * 179.97438 * 17 15 14 19 19 Si 1.86802 * 119.99756 * 359.97438 * 17 15 14 20 20 H 1.48497 * 109.46974 * 90.00422 * 19 17 15 21 21 H 1.48502 * 109.46874 * 210.00462 * 19 17 15 22 22 H 1.48498 * 109.47411 * 330.00300 * 19 17 15 23 23 C 1.39920 * 120.00422 * 4.41396 * 13 11 10 24 24 C 1.38878 * 120.06912 * 66.45462 * 23 13 11 25 25 C 1.38113 * 119.92649 * 179.69770 * 24 23 13 26 26 C 1.38280 * 120.07096 * 0.57590 * 25 24 23 27 27 C 1.38280 * 120.14095 * 359.72034 * 26 25 24 28 28 C 1.38109 * 120.07188 * 359.97438 * 27 26 25 29 29 C 1.54483 * 104.05989 * 0.02562 * 5 4 2 30 30 O 1.44419 * 110.37351 * 122.24942 * 2 1 3 31 31 H 1.09008 * 109.46897 * 299.20046 * 1 2 3 32 32 H 1.08998 * 109.47515 * 59.20019 * 1 2 3 33 33 H 1.08998 * 109.46878 * 179.20654 * 1 2 3 34 34 H 1.09004 * 110.51522 * 98.49236 * 4 2 1 35 35 H 1.08998 * 110.51455 * 335.78106 * 4 2 1 36 36 H 1.08996 * 109.47589 * 59.99233 * 10 9 7 37 37 H 1.09008 * 109.47091 * 299.99484 * 10 9 7 38 38 H 1.09000 * 109.47346 * 29.72148 * 14 13 11 39 39 H 1.09003 * 109.47251 * 149.72272 * 14 13 11 40 40 H 0.97005 * 119.99788 * 179.97438 * 18 17 15 41 41 H 1.08000 * 120.02957 * 359.97340 * 24 23 13 42 42 H 1.08006 * 119.95956 * 180.29192 * 25 24 23 43 43 H 1.08001 * 119.92532 * 179.70044 * 26 25 24 44 44 H 1.08003 * 119.95850 * 180.02562 * 27 26 25 45 45 H 1.08006 * 120.03405 * 180.02562 * 28 27 26 46 46 H 1.08996 * 110.37288 * 142.80744 * 29 5 4 47 47 H 1.09000 * 110.37340 * 265.14978 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9086 1.0221 0.0000 4 6 2.0701 -0.7735 -1.2231 5 6 3.3208 -1.5031 -0.6837 6 1 3.2028 -2.5831 -0.7707 7 6 4.5555 -1.0473 -1.4176 8 8 4.4589 -0.2720 -2.3393 9 8 5.7628 -1.5027 -1.0475 10 6 6.9079 -1.0207 -1.7988 11 6 8.1674 -1.6348 -1.2440 12 8 8.1173 -2.3268 -0.2493 13 7 9.3493 -1.4149 -1.8533 14 6 10.5567 -2.0936 -1.3761 15 6 11.2308 -1.2433 -0.3303 16 1 10.8028 -0.2923 -0.0495 17 6 12.3945 -1.6789 0.2674 18 7 12.9829 -0.9366 1.1796 19 14 13.1350 -3.3235 -0.2188 20 1 14.0812 -3.1264 -1.3462 21 1 13.8603 -3.9019 0.9409 22 1 12.0523 -4.2496 -0.6373 23 6 9.4220 -0.5431 -2.9452 24 6 9.1828 0.8136 -2.7695 25 6 9.2615 1.6725 -3.8483 26 6 9.5665 1.1812 -5.1043 27 6 9.7992 -0.1700 -5.2837 28 6 9.7282 -1.0333 -4.2079 29 6 3.3880 -1.0844 0.8018 30 8 2.0328 -0.7224 1.1450 31 1 -0.3633 0.5014 0.8971 32 1 -0.3634 0.5262 -0.8827 33 1 -0.3633 -1.0276 -0.0142 34 1 2.3449 -0.0833 -2.0207 35 1 1.3314 -1.4927 -1.5768 36 1 6.9662 0.0645 -1.7160 37 1 6.7984 -1.2997 -2.8469 38 1 10.2852 -3.0559 -0.9422 39 1 11.2391 -2.2512 -2.2113 40 1 13.8014 -1.2433 1.6003 41 1 8.9398 1.1972 -1.7896 42 1 9.0802 2.7284 -3.7114 43 1 9.6227 1.8542 -5.9471 44 1 10.0375 -0.5506 -6.2659 45 1 9.9104 -2.0885 -4.3486 46 1 3.7255 -1.9190 1.4163 47 1 4.0514 -0.2285 0.9252 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000784281996.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:26:20 Heat of formation + Delta-G solvation = -126.438570 kcal Electronic energy + Delta-G solvation = -30517.249673 eV Core-core repulsion = 26244.794259 eV Total energy + Delta-G solvation = -4272.455413 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.11471 -40.11315 -39.26992 -38.22700 -36.54642 -35.04716 -32.78971 -32.68513 -32.20380 -30.87876 -29.92996 -29.18644 -27.25322 -26.32069 -24.09783 -22.78615 -22.60863 -22.04935 -21.73154 -20.38997 -19.30175 -18.28767 -17.55570 -17.09811 -16.85109 -16.69035 -16.13556 -15.96806 -15.78058 -15.54061 -15.21516 -14.97665 -14.44557 -14.21756 -14.08500 -13.56233 -13.46928 -13.27267 -13.06474 -12.78680 -12.66629 -12.52201 -12.46022 -12.40286 -12.37482 -11.88581 -11.70908 -11.46425 -11.32146 -11.24812 -11.17274 -10.94437 -10.80416 -10.64950 -10.59800 -10.26887 -10.11591 -9.65716 -9.57573 -8.81568 -8.76999 -8.65403 -7.86504 -6.14595 -4.14375 1.40518 1.51941 1.94649 2.21035 2.94644 3.22593 3.29996 3.32821 3.45202 3.65015 3.88735 3.99109 4.31054 4.33532 4.50963 4.59656 4.62691 4.80972 4.83196 5.00842 5.02824 5.07127 5.11798 5.16252 5.18212 5.24319 5.28572 5.31995 5.46178 5.53656 5.54939 5.62235 5.65933 5.68933 5.79341 5.85771 6.13015 6.20451 6.43591 6.47274 6.53866 6.61034 6.61979 6.79713 6.94205 7.16014 7.48513 7.50490 7.97015 8.35527 8.61124 8.87636 9.43573 10.98590 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.011164 B = 0.002931 C = 0.002486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2507.385244 B = 9549.588304 C =11261.919654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.067 3.933 3 H 0.072 0.928 4 C -0.145 4.145 5 C -0.117 4.117 6 H 0.125 0.875 7 C 0.469 3.531 8 O -0.504 6.504 9 O -0.326 6.326 10 C 0.051 3.949 11 C 0.517 3.483 12 O -0.500 6.500 13 N -0.550 5.550 14 C 0.220 3.780 15 C -0.530 4.530 16 H 0.076 0.924 17 C 0.075 3.925 18 N -0.893 5.893 19 Si 0.873 3.127 20 H -0.274 1.274 21 H -0.282 1.282 22 H -0.263 1.263 23 C 0.150 3.850 24 C -0.122 4.122 25 C -0.105 4.105 26 C -0.129 4.129 27 C -0.109 4.109 28 C -0.125 4.125 29 C 0.060 3.940 30 O -0.366 6.366 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.064 0.936 34 H 0.102 0.898 35 H 0.088 0.912 36 H 0.101 0.899 37 H 0.097 0.903 38 H 0.046 0.954 39 H 0.032 0.968 40 H 0.266 0.734 41 H 0.125 0.875 42 H 0.124 0.876 43 H 0.121 0.879 44 H 0.123 0.877 45 H 0.125 0.875 46 H 0.112 0.888 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.568 2.275 -10.954 22.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.009 3.991 3 H 0.090 0.910 4 C -0.183 4.183 5 C -0.136 4.136 6 H 0.143 0.857 7 C 0.312 3.688 8 O -0.392 6.392 9 O -0.241 6.241 10 C -0.026 4.026 11 C 0.302 3.698 12 O -0.373 6.373 13 N -0.279 5.279 14 C 0.102 3.898 15 C -0.569 4.569 16 H 0.094 0.906 17 C -0.128 4.128 18 N -0.531 5.531 19 Si 0.699 3.301 20 H -0.200 1.200 21 H -0.207 1.207 22 H -0.188 1.188 23 C 0.059 3.941 24 C -0.142 4.142 25 C -0.124 4.124 26 C -0.148 4.148 27 C -0.127 4.127 28 C -0.145 4.145 29 C -0.017 4.017 30 O -0.285 6.285 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.121 0.879 35 H 0.107 0.893 36 H 0.119 0.881 37 H 0.115 0.885 38 H 0.064 0.936 39 H 0.050 0.950 40 H 0.076 0.924 41 H 0.143 0.857 42 H 0.142 0.858 43 H 0.139 0.861 44 H 0.141 0.859 45 H 0.143 0.857 46 H 0.130 0.870 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -19.532 2.038 -10.302 22.176 hybrid contribution 1.024 -0.578 -0.505 1.279 sum -18.508 1.460 -10.807 21.482 Atomic orbital electron populations 1.21800 0.92774 1.03044 1.02679 1.23063 0.95673 0.95764 0.84551 0.90959 1.23137 0.94979 1.00522 0.99627 1.22436 0.90162 1.04055 0.96942 0.85732 1.23411 0.84944 0.78270 0.82211 1.90653 1.86871 1.32987 1.28661 1.86545 1.14636 1.65511 1.57399 1.22907 0.83124 1.00565 0.96026 1.19725 0.83611 0.82205 0.84233 1.90744 1.85725 1.37775 1.23072 1.45502 1.08898 1.44070 1.29456 1.19862 0.80568 0.94014 0.95361 1.21212 1.08403 1.06339 1.20905 0.90574 1.24814 0.96446 0.97007 0.94505 1.69881 1.19142 1.37690 1.26418 0.86897 0.79871 0.84671 0.78644 1.19984 1.20743 1.18800 1.17762 0.99822 0.89518 0.87034 1.21398 1.01140 0.92162 0.99450 1.21011 0.99481 0.99467 0.92448 1.21113 1.00888 0.95516 0.97245 1.20978 0.99962 0.93439 0.98366 1.21278 1.01360 1.00345 0.91534 1.23332 0.84982 1.01451 0.91918 1.89175 1.26599 1.74523 1.38207 0.91638 0.90971 0.91643 0.87932 0.89339 0.88117 0.88460 0.93576 0.95040 0.92424 0.85675 0.85809 0.86128 0.85890 0.85701 0.87032 0.91337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.53 37.16 0.35 -0.62 16 2 C 0.07 0.59 3.92 -25.96 -0.10 0.49 16 3 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 4 C -0.15 -1.24 6.21 -25.17 -0.16 -1.40 16 5 C -0.12 -1.16 3.62 -90.20 -0.33 -1.49 16 6 H 0.12 1.03 8.14 -51.93 -0.42 0.61 16 7 C 0.47 6.18 7.15 36.00 0.26 6.44 16 8 O -0.50 -7.37 15.04 -18.75 -0.28 -7.65 16 9 O -0.33 -5.09 9.74 -45.89 -0.45 -5.54 16 10 C 0.05 0.81 4.61 36.01 0.17 0.98 16 11 C 0.52 10.50 7.61 -10.99 -0.08 10.42 16 12 O -0.50 -12.11 16.13 -14.05 -0.23 -12.33 16 13 N -0.55 -11.29 2.51 -114.74 -0.29 -11.58 16 14 C 0.22 5.29 4.14 -5.19 -0.02 5.27 16 15 C -0.53 -15.04 9.94 -34.44 -0.34 -15.38 16 16 H 0.08 2.37 8.06 -52.49 -0.42 1.95 16 17 C 0.08 2.17 5.47 -17.82 -0.10 2.07 16 18 N -0.89 -27.29 13.96 55.43 0.77 -26.51 16 19 Si 0.87 21.15 27.47 -169.99 -4.67 16.49 16 20 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 21 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.26 -6.16 6.54 56.52 0.37 -5.79 16 23 C 0.15 2.60 4.44 -83.69 -0.37 2.23 16 24 C -0.12 -1.93 8.43 -39.39 -0.33 -2.26 16 25 C -0.11 -1.37 10.04 -39.61 -0.40 -1.77 16 26 C -0.13 -1.52 10.04 -39.55 -0.40 -1.92 16 27 C -0.11 -1.34 10.04 -39.61 -0.40 -1.73 16 28 C -0.13 -1.86 9.63 -39.39 -0.38 -2.24 16 29 C 0.06 0.63 7.16 37.94 0.27 0.90 16 30 O -0.37 -4.02 11.34 -35.23 -0.40 -4.42 16 31 H 0.06 0.44 8.14 -51.92 -0.42 0.01 16 32 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.06 0.42 8.13 -51.93 -0.42 0.00 16 34 H 0.10 0.97 6.51 -51.93 -0.34 0.63 16 35 H 0.09 0.61 7.86 -51.93 -0.41 0.20 16 36 H 0.10 1.50 6.94 -51.93 -0.36 1.14 16 37 H 0.10 1.39 8.02 -51.92 -0.42 0.97 16 38 H 0.05 1.17 6.54 -51.93 -0.34 0.83 16 39 H 0.03 0.72 7.24 -51.93 -0.38 0.34 16 40 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 41 H 0.13 2.02 7.88 -52.49 -0.41 1.61 16 42 H 0.12 1.31 8.06 -52.48 -0.42 0.89 16 43 H 0.12 1.09 8.06 -52.49 -0.42 0.66 16 44 H 0.12 1.17 8.06 -52.48 -0.42 0.75 16 45 H 0.13 1.73 8.06 -52.48 -0.42 1.30 16 46 H 0.11 1.07 8.14 -51.93 -0.42 0.65 16 47 H 0.07 0.75 7.86 -51.93 -0.41 0.34 16 LS Contribution 395.23 15.07 5.96 5.96 Total: -1.00 -34.72 395.23 -8.82 -43.54 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: -6.88 Total: 2.07 kcal Atomic # 6 Polarization: 2.33 SS G_CDS: -2.36 Total: -0.02 kcal Atomic # 7 Polarization: -38.58 SS G_CDS: 0.49 Total: -38.09 kcal Atomic # 8 Polarization: -28.58 SS G_CDS: -1.36 Total: -29.94 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -4.67 Total: 16.49 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -34.72 -8.82 -43.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784281996.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.899 kcal (2) G-P(sol) polarization free energy of solvation -34.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds