Wall clock time and date at job start Wed Apr 1 2020 05:26:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 110.32507 * 2 1 4 4 C 1.54469 * 110.46500 * 237.68963 * 2 1 3 5 5 C 1.54513 * 104.06494 * 217.13807 * 4 2 1 6 6 H 1.08997 * 110.62948 * 118.69850 * 5 4 2 7 7 C 1.50696 * 110.51229 * 241.35709 * 5 4 2 8 8 O 1.20826 * 120.00048 * 356.09439 * 7 5 4 9 9 O 1.34232 * 119.99961 * 176.09549 * 7 5 4 10 10 C 1.45196 * 117.00092 * 180.02562 * 9 7 5 11 11 C 1.50704 * 109.47195 * 179.97438 * 10 9 7 12 12 O 1.21281 * 119.99776 * 354.72371 * 11 10 9 13 13 N 1.34773 * 119.99729 * 174.72952 * 11 10 9 14 14 C 1.46500 * 119.99507 * 184.69731 * 13 11 10 15 15 C 1.50702 * 109.47121 * 269.72075 * 14 13 11 16 16 H 1.07996 * 120.00028 * 359.97438 * 15 14 13 17 17 C 1.37881 * 120.00143 * 180.02562 * 15 14 13 18 18 N 1.31509 * 119.99956 * 179.97438 * 17 15 14 19 19 Si 1.86802 * 119.99756 * 359.97438 * 17 15 14 20 20 H 1.48497 * 109.46974 * 90.00422 * 19 17 15 21 21 H 1.48502 * 109.46874 * 210.00462 * 19 17 15 22 22 H 1.48498 * 109.47411 * 330.00300 * 19 17 15 23 23 C 1.39920 * 120.00422 * 4.41396 * 13 11 10 24 24 C 1.38878 * 120.06912 * 66.45462 * 23 13 11 25 25 C 1.38113 * 119.92649 * 179.69770 * 24 23 13 26 26 C 1.38280 * 120.07096 * 0.57590 * 25 24 23 27 27 C 1.38280 * 120.14095 * 359.72034 * 26 25 24 28 28 C 1.38109 * 120.07188 * 359.97438 * 27 26 25 29 29 C 1.54483 * 104.05989 * 0.02562 * 5 4 2 30 30 O 1.44419 * 110.37351 * 122.24942 * 2 1 3 31 31 H 1.09008 * 109.46897 * 299.20046 * 1 2 3 32 32 H 1.08998 * 109.47515 * 59.20019 * 1 2 3 33 33 H 1.08998 * 109.46878 * 179.20654 * 1 2 3 34 34 H 1.09004 * 110.51522 * 98.49236 * 4 2 1 35 35 H 1.08998 * 110.51455 * 335.78106 * 4 2 1 36 36 H 1.08996 * 109.47589 * 59.99233 * 10 9 7 37 37 H 1.09008 * 109.47091 * 299.99484 * 10 9 7 38 38 H 1.09000 * 109.47346 * 29.72148 * 14 13 11 39 39 H 1.09003 * 109.47251 * 149.72272 * 14 13 11 40 40 H 0.97005 * 119.99788 * 179.97438 * 18 17 15 41 41 H 1.08000 * 120.02957 * 359.97340 * 24 23 13 42 42 H 1.08006 * 119.95956 * 180.29192 * 25 24 23 43 43 H 1.08001 * 119.92532 * 179.70044 * 26 25 24 44 44 H 1.08003 * 119.95850 * 180.02562 * 27 26 25 45 45 H 1.08006 * 120.03405 * 180.02562 * 28 27 26 46 46 H 1.08996 * 110.37288 * 142.80744 * 29 5 4 47 47 H 1.09000 * 110.37340 * 265.14978 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9086 1.0221 0.0000 4 6 2.0701 -0.7735 -1.2231 5 6 3.3208 -1.5031 -0.6837 6 1 3.2028 -2.5831 -0.7707 7 6 4.5555 -1.0473 -1.4176 8 8 4.4589 -0.2720 -2.3393 9 8 5.7628 -1.5027 -1.0475 10 6 6.9079 -1.0207 -1.7988 11 6 8.1674 -1.6348 -1.2440 12 8 8.1173 -2.3268 -0.2493 13 7 9.3493 -1.4149 -1.8533 14 6 10.5567 -2.0936 -1.3761 15 6 11.2308 -1.2433 -0.3303 16 1 10.8028 -0.2923 -0.0495 17 6 12.3945 -1.6789 0.2674 18 7 12.9829 -0.9366 1.1796 19 14 13.1350 -3.3235 -0.2188 20 1 14.0812 -3.1264 -1.3462 21 1 13.8603 -3.9019 0.9409 22 1 12.0523 -4.2496 -0.6373 23 6 9.4220 -0.5431 -2.9452 24 6 9.1828 0.8136 -2.7695 25 6 9.2615 1.6725 -3.8483 26 6 9.5665 1.1812 -5.1043 27 6 9.7992 -0.1700 -5.2837 28 6 9.7282 -1.0333 -4.2079 29 6 3.3880 -1.0844 0.8018 30 8 2.0328 -0.7224 1.1450 31 1 -0.3633 0.5014 0.8971 32 1 -0.3634 0.5262 -0.8827 33 1 -0.3633 -1.0276 -0.0142 34 1 2.3449 -0.0833 -2.0207 35 1 1.3314 -1.4927 -1.5768 36 1 6.9662 0.0645 -1.7160 37 1 6.7984 -1.2997 -2.8469 38 1 10.2852 -3.0559 -0.9422 39 1 11.2391 -2.2512 -2.2113 40 1 13.8014 -1.2433 1.6003 41 1 8.9398 1.1972 -1.7896 42 1 9.0802 2.7284 -3.7114 43 1 9.6227 1.8542 -5.9471 44 1 10.0375 -0.5506 -6.2659 45 1 9.9104 -2.0885 -4.3486 46 1 3.7255 -1.9190 1.4163 47 1 4.0514 -0.2285 0.9252 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000784281996.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:26:19 Heat of formation + Delta-G solvation = -147.095529 kcal Electronic energy + Delta-G solvation = -30518.145425 eV Core-core repulsion = 26244.794259 eV Total energy + Delta-G solvation = -4273.351166 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.22709 -41.44513 -40.19842 -39.53778 -37.74548 -36.63149 -34.81342 -33.59533 -32.91202 -32.02493 -31.50507 -30.45176 -28.89284 -27.05589 -25.23966 -24.35945 -23.82776 -23.34380 -22.53532 -21.34399 -20.72020 -19.34252 -19.17365 -18.86149 -18.04565 -17.88897 -17.36059 -17.10940 -16.85719 -16.67053 -16.33915 -16.15582 -15.90509 -15.57497 -15.34175 -14.90226 -14.48785 -14.46348 -14.33314 -14.10904 -14.01372 -13.78871 -13.58474 -13.46825 -13.22775 -13.19962 -13.00465 -12.57377 -12.52212 -12.46930 -12.20635 -12.07348 -12.02637 -11.99575 -11.89690 -11.79872 -11.62048 -11.18160 -10.90287 -10.86007 -10.24694 -9.88475 -9.31889 -8.37411 -6.43747 0.26442 0.44827 0.88430 1.03042 1.29996 1.34799 1.37123 1.44506 2.12512 2.28023 2.77743 2.82033 2.96355 3.18209 3.24063 3.53657 3.58354 3.82185 3.82825 3.88909 4.02626 4.06689 4.07600 4.12484 4.28230 4.39124 4.50381 4.54632 4.55224 4.62099 4.65179 4.75178 4.80479 4.81089 4.86111 4.89570 5.06123 5.09508 5.13983 5.27804 5.28316 5.34525 5.48042 5.58180 5.62856 5.73337 5.98233 6.14878 6.35858 6.47876 6.56346 6.99412 7.20225 8.79595 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.011164 B = 0.002931 C = 0.002486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2507.385244 B = 9549.588304 C =11261.919654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.060 3.940 3 H 0.067 0.933 4 C -0.138 4.138 5 C -0.112 4.112 6 H 0.147 0.853 7 C 0.471 3.529 8 O -0.518 6.518 9 O -0.343 6.343 10 C 0.066 3.934 11 C 0.510 3.490 12 O -0.552 6.552 13 N -0.551 5.551 14 C 0.230 3.770 15 C -0.538 4.538 16 H 0.027 0.973 17 C 0.013 3.987 18 N -0.943 5.943 19 Si 0.946 3.054 20 H -0.252 1.252 21 H -0.280 1.280 22 H -0.250 1.250 23 C 0.112 3.888 24 C -0.142 4.142 25 C -0.106 4.106 26 C -0.116 4.116 27 C -0.101 4.101 28 C -0.132 4.132 29 C 0.058 3.942 30 O -0.380 6.380 31 H 0.063 0.937 32 H 0.090 0.910 33 H 0.070 0.930 34 H 0.095 0.905 35 H 0.112 0.888 36 H 0.108 0.892 37 H 0.119 0.881 38 H 0.033 0.967 39 H 0.052 0.948 40 H 0.270 0.730 41 H 0.104 0.896 42 H 0.148 0.852 43 H 0.160 0.840 44 H 0.160 0.840 45 H 0.132 0.868 46 H 0.117 0.883 47 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.444 1.719 -14.531 25.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.002 3.998 3 H 0.085 0.915 4 C -0.175 4.175 5 C -0.131 4.131 6 H 0.165 0.835 7 C 0.315 3.685 8 O -0.406 6.406 9 O -0.258 6.258 10 C -0.010 4.010 11 C 0.298 3.702 12 O -0.430 6.430 13 N -0.279 5.279 14 C 0.110 3.890 15 C -0.576 4.576 16 H 0.045 0.955 17 C -0.185 4.185 18 N -0.582 5.582 19 Si 0.768 3.232 20 H -0.176 1.176 21 H -0.205 1.205 22 H -0.174 1.174 23 C 0.022 3.978 24 C -0.161 4.161 25 C -0.124 4.124 26 C -0.134 4.134 27 C -0.119 4.119 28 C -0.151 4.151 29 C -0.019 4.019 30 O -0.299 6.299 31 H 0.082 0.918 32 H 0.108 0.892 33 H 0.089 0.911 34 H 0.113 0.887 35 H 0.130 0.870 36 H 0.126 0.874 37 H 0.136 0.864 38 H 0.051 0.949 39 H 0.070 0.930 40 H 0.079 0.921 41 H 0.122 0.878 42 H 0.165 0.835 43 H 0.178 0.822 44 H 0.178 0.822 45 H 0.150 0.850 46 H 0.135 0.865 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -20.434 1.523 -13.932 24.778 hybrid contribution 1.248 -0.216 0.571 1.390 sum -19.185 1.307 -13.361 23.416 Atomic orbital electron populations 1.21811 0.90952 1.03653 1.03487 1.23254 0.97135 0.95373 0.83999 0.91453 1.23147 0.94595 1.00680 0.99089 1.22594 0.88950 1.05500 0.96093 0.83523 1.24022 0.84720 0.77703 0.82089 1.90639 1.86899 1.33613 1.29489 1.86561 1.15323 1.66065 1.57880 1.22675 0.81561 1.00288 0.96515 1.20466 0.84888 0.81345 0.83483 1.90698 1.86658 1.40267 1.25359 1.45387 1.07906 1.44219 1.30391 1.19514 0.82079 0.92740 0.94702 1.21411 1.08790 1.05170 1.22250 0.95474 1.25838 0.96900 1.01517 0.94257 1.70043 1.19982 1.40163 1.28048 0.85736 0.79392 0.79095 0.78962 1.17580 1.20493 1.17398 1.18040 1.03223 0.89566 0.87010 1.21394 1.02600 0.92340 0.99787 1.21331 0.98634 1.00253 0.92212 1.21606 0.98183 0.96021 0.97594 1.21416 0.98128 0.93313 0.99019 1.21454 1.01213 1.01351 0.91101 1.23320 0.84883 1.01200 0.92490 1.89169 1.26540 1.74829 1.39375 0.91826 0.89170 0.91139 0.88695 0.86985 0.87444 0.86362 0.94948 0.92968 0.92130 0.87761 0.83456 0.82217 0.82213 0.85008 0.86509 0.92642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 9.53 71.98 0.69 -0.96 16 2 C 0.06 0.99 3.92 31.09 0.12 1.11 16 3 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 4 C -0.14 -2.14 6.21 31.61 0.20 -1.95 16 5 C -0.11 -2.14 3.62 -10.52 -0.04 -2.18 16 6 H 0.15 2.17 8.14 -2.39 -0.02 2.15 16 7 C 0.47 12.30 7.15 71.23 0.51 12.81 16 8 O -0.52 -14.83 15.04 21.96 0.33 -14.50 16 9 O -0.34 -10.95 9.74 -45.10 -0.44 -11.39 16 10 C 0.07 2.18 4.61 71.24 0.33 2.51 16 11 C 0.51 21.78 7.61 87.66 0.67 22.44 16 12 O -0.55 -28.36 16.13 15.71 0.25 -28.11 16 13 N -0.55 -23.46 2.51 -635.30 -1.60 -25.05 16 14 C 0.23 11.32 4.14 85.63 0.35 11.68 16 15 C -0.54 -32.04 9.94 25.60 0.25 -31.78 16 16 H 0.03 1.82 8.06 -2.91 -0.02 1.79 16 17 C 0.01 0.79 5.47 84.66 0.46 1.25 16 18 N -0.94 -59.87 13.96 21.45 0.30 -59.57 16 19 Si 0.95 44.01 27.47 68.60 1.88 45.89 16 20 H -0.25 -10.75 7.11 99.48 0.71 -10.05 16 21 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 22 H -0.25 -11.02 6.54 99.48 0.65 -10.37 16 23 C 0.11 3.89 4.44 38.15 0.17 4.06 16 24 C -0.14 -4.55 8.43 22.39 0.19 -4.36 16 25 C -0.11 -2.54 10.04 22.25 0.22 -2.31 16 26 C -0.12 -2.26 10.04 22.29 0.22 -2.03 16 27 C -0.10 -2.07 10.04 22.25 0.22 -1.84 16 28 C -0.13 -3.65 9.63 22.39 0.22 -3.43 16 29 C 0.06 1.22 7.16 72.49 0.52 1.74 16 30 O -0.38 -8.17 11.34 -148.98 -1.69 -9.86 16 31 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 32 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.07 0.76 8.13 -2.39 -0.02 0.74 16 34 H 0.09 1.67 6.51 -2.39 -0.02 1.65 16 35 H 0.11 1.23 7.86 -2.39 -0.02 1.21 16 36 H 0.11 3.35 6.94 -2.39 -0.02 3.34 16 37 H 0.12 3.35 8.02 -2.38 -0.02 3.33 16 38 H 0.03 1.68 6.54 -2.39 -0.02 1.67 16 39 H 0.05 2.35 7.24 -2.39 -0.02 2.33 16 40 H 0.27 15.86 8.31 -92.70 -0.77 15.09 16 41 H 0.10 3.66 7.88 -2.91 -0.02 3.64 16 42 H 0.15 2.75 8.06 -2.91 -0.02 2.73 16 43 H 0.16 1.92 8.06 -2.91 -0.02 1.89 16 44 H 0.16 2.14 8.06 -2.91 -0.02 2.11 16 45 H 0.13 3.38 8.06 -2.91 -0.02 3.36 16 46 H 0.12 2.28 8.14 -2.39 -0.02 2.26 16 47 H 0.06 1.29 7.86 -2.39 -0.02 1.27 16 Total: -1.00 -80.50 395.23 5.27 -75.23 By element: Atomic # 1 Polarization: 19.69 SS G_CDS: 0.92 Total: 20.61 kcal Atomic # 6 Polarization: 1.44 SS G_CDS: 5.31 Total: 6.75 kcal Atomic # 7 Polarization: -83.33 SS G_CDS: -1.30 Total: -84.62 kcal Atomic # 8 Polarization: -62.31 SS G_CDS: -1.55 Total: -63.86 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 1.88 Total: 45.89 kcal Total: -80.50 5.27 -75.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784281996.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.862 kcal (2) G-P(sol) polarization free energy of solvation -80.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds