Wall clock time and date at job start Wed Apr 1 2020 05:30:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34230 * 116.99975 * 2 1 4 4 O 1.20824 * 119.99685 * 359.97438 * 3 2 1 5 5 C 1.50692 * 120.00027 * 179.97438 * 3 2 1 6 6 H 1.09002 * 110.37344 * 60.73084 * 5 3 2 7 7 C 1.54624 * 110.32844 * 298.54581 * 5 3 2 8 8 C 1.54938 * 103.00126 * 219.17017 * 7 5 3 9 9 N 1.48594 * 103.03215 * 37.35732 * 8 7 5 10 10 C 1.34780 * 126.98184 * 140.70913 * 9 8 7 11 11 O 1.21284 * 119.99739 * 180.02562 * 10 9 8 12 12 C 1.50695 * 120.00103 * 0.03924 * 10 9 8 13 13 C 1.50701 * 109.47151 * 180.02562 * 12 10 9 14 14 C 1.38306 * 119.92739 * 269.72587 * 13 12 10 15 15 C 1.38098 * 120.06471 * 179.72415 * 14 13 12 16 16 C 1.38886 * 119.93102 * 0.55280 * 15 14 13 17 17 O 1.35755 * 120.06934 * 179.74696 * 16 15 14 18 18 C 1.34822 * 116.99659 * 174.44333 * 17 16 15 19 19 H 1.07998 * 120.00690 * 5.05382 * 18 17 16 20 20 C 1.38653 * 119.99964 * 185.05730 * 18 17 16 21 21 N 1.31554 * 120.00650 * 179.97438 * 20 18 17 22 22 Si 1.86805 * 119.99775 * 359.97438 * 20 18 17 23 23 H 1.48503 * 109.47046 * 90.00131 * 22 20 18 24 24 H 1.48501 * 109.47212 * 210.00035 * 22 20 18 25 25 H 1.48497 * 109.47174 * 329.99962 * 22 20 18 26 26 C 1.38873 * 119.86076 * 359.72294 * 16 15 14 27 27 C 1.38102 * 119.93604 * 0.02562 * 26 16 15 28 28 C 1.47484 * 105.98411 * 320.74326 * 9 8 7 29 29 H 1.09009 * 110.07442 * 144.89983 * 28 9 8 30 30 C 1.52996 * 109.91277 * 266.08882 * 28 9 8 31 31 H 1.09008 * 109.46872 * 60.00152 * 1 2 3 32 32 H 1.08998 * 109.47105 * 179.97438 * 1 2 3 33 33 H 1.08994 * 109.47533 * 300.00453 * 1 2 3 34 34 H 1.09007 * 110.73439 * 337.59844 * 7 5 3 35 35 H 1.08996 * 110.73782 * 100.73651 * 7 5 3 36 36 H 1.09010 * 110.65922 * 155.90879 * 8 7 5 37 37 H 1.08998 * 110.66078 * 279.01712 * 8 7 5 38 38 H 1.09000 * 109.47419 * 300.00724 * 12 10 9 39 39 H 1.09003 * 109.46909 * 60.00263 * 12 10 9 40 40 H 1.07993 * 119.96584 * 0.02562 * 14 13 12 41 41 H 1.08000 * 120.03449 * 180.27363 * 15 14 13 42 42 H 0.97001 * 120.00380 * 180.02562 * 21 20 18 43 43 H 1.08003 * 120.03715 * 180.02562 * 26 16 15 44 44 H 1.07996 * 119.96978 * 180.02562 * 27 26 16 45 45 H 1.09006 * 109.46752 * 177.61545 * 30 28 9 46 46 H 1.08995 * 109.47407 * 297.61619 * 30 28 9 47 47 H 1.08993 * 109.47205 * 57.62037 * 30 28 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9718 0.7957 -0.8905 7 6 4.1385 0.6113 1.2746 8 6 5.3094 1.5497 1.6605 9 7 4.7802 2.8987 1.3315 10 6 4.9544 4.0327 2.0388 11 8 4.4618 5.0709 1.6510 12 6 5.7614 4.0106 3.3112 13 6 5.8027 5.3955 3.9040 14 6 6.8186 6.2661 3.5536 15 6 6.8559 7.5378 4.0907 16 6 5.8785 7.9382 4.9924 17 8 5.9154 9.1859 5.5261 18 6 4.8758 9.5500 6.3036 19 1 4.1042 8.8336 6.5439 20 6 4.7973 10.8443 6.7946 21 7 3.7827 11.1999 7.5528 22 14 6.1322 12.0833 6.3794 23 1 5.7708 12.8004 5.1303 24 1 6.2640 13.0599 7.4904 25 1 7.4230 11.3747 6.1876 26 6 4.8629 7.0597 5.3466 27 6 4.8281 5.7910 4.8021 28 6 4.0251 2.7431 0.0742 29 1 3.1578 3.4035 0.0745 30 6 4.9265 3.0679 -1.1186 31 1 -0.3633 0.5139 -0.8901 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3634 0.5139 0.8899 34 1 3.3888 0.5841 2.0655 35 1 4.5037 -0.3921 1.0564 36 1 5.5323 1.4691 2.7245 37 1 6.1936 1.3270 1.0634 38 1 5.3003 3.3250 4.0221 39 1 6.7762 3.6784 3.0921 40 1 7.5806 5.9528 2.8555 41 1 7.6470 8.2188 3.8133 42 1 3.7276 12.1055 7.8960 43 1 4.1011 7.3682 6.0473 44 1 4.0384 5.1075 5.0768 45 1 4.3743 2.9099 -2.0450 46 1 5.2468 4.1080 -1.0594 47 1 5.8006 2.4170 -1.1012 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787505829.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:30:21 Heat of formation + Delta-G solvation = -114.289864 kcal Electronic energy + Delta-G solvation = -29924.449878 eV Core-core repulsion = 25652.521272 eV Total energy + Delta-G solvation = -4271.928606 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.30881 -39.99138 -39.07136 -37.84029 -36.78087 -36.45055 -32.74388 -32.34956 -31.70945 -31.06016 -30.17896 -28.59099 -26.97584 -26.73129 -24.95122 -23.16674 -22.82710 -22.04157 -21.00216 -20.20387 -19.14154 -18.14185 -17.83324 -17.39860 -17.20913 -17.02237 -16.44725 -16.25560 -15.32382 -14.85929 -14.64716 -14.41092 -14.23102 -13.94776 -13.90618 -13.69364 -13.55407 -13.45754 -13.25983 -13.08508 -12.82361 -12.62470 -12.55218 -12.38633 -12.21221 -12.15746 -11.91314 -11.62839 -11.48379 -11.24942 -11.22941 -11.21531 -10.88059 -10.72316 -10.69238 -10.62587 -10.10987 -9.70536 -9.32929 -8.87837 -8.80937 -8.17724 -7.25253 -6.36486 -4.02731 1.77687 2.11748 2.21713 2.25066 2.74397 2.87637 3.25838 3.30210 3.44312 3.83275 3.98353 4.23445 4.28432 4.48392 4.63289 4.68577 4.70709 4.76327 4.79779 4.88003 4.91849 5.08638 5.09591 5.11275 5.14581 5.16390 5.17198 5.27842 5.31231 5.40163 5.52663 5.62460 5.70973 5.78400 5.80917 5.92911 5.96809 6.14049 6.19367 6.38732 6.62205 6.85231 7.07993 7.27647 7.31116 7.36449 7.42988 7.67488 7.86147 8.09430 8.27483 8.98934 9.61816 10.71274 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.018570 B = 0.002066 C = 0.001972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.447242 B =13549.258376 C =14194.963825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.358 6.358 3 C 0.466 3.534 4 O -0.494 6.494 5 C -0.093 4.093 6 H 0.125 0.875 7 C -0.121 4.121 8 C 0.098 3.902 9 N -0.628 5.628 10 C 0.530 3.470 11 O -0.512 6.512 12 C -0.075 4.075 13 C -0.163 4.163 14 C -0.061 4.061 15 C -0.191 4.191 16 C 0.162 3.838 17 O -0.218 6.218 18 C -0.388 4.388 19 H 0.106 0.894 20 C 0.062 3.938 21 N -0.881 5.881 22 Si 0.906 3.094 23 H -0.273 1.273 24 H -0.283 1.283 25 H -0.260 1.260 26 C -0.219 4.219 27 C -0.057 4.057 28 C 0.134 3.866 29 H 0.109 0.891 30 C -0.157 4.157 31 H 0.064 0.936 32 H 0.103 0.897 33 H 0.064 0.936 34 H 0.080 0.920 35 H 0.097 0.903 36 H 0.090 0.910 37 H 0.079 0.921 38 H 0.092 0.908 39 H 0.093 0.907 40 H 0.110 0.890 41 H 0.117 0.883 42 H 0.279 0.721 43 H 0.133 0.867 44 H 0.106 0.894 45 H 0.065 0.935 46 H 0.068 0.932 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.675 -28.453 -15.690 32.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.274 6.274 3 C 0.308 3.692 4 O -0.380 6.380 5 C -0.113 4.113 6 H 0.143 0.857 7 C -0.159 4.159 8 C -0.025 4.025 9 N -0.365 5.365 10 C 0.320 3.680 11 O -0.385 6.385 12 C -0.115 4.115 13 C -0.164 4.164 14 C -0.079 4.079 15 C -0.210 4.210 16 C 0.110 3.890 17 O -0.123 6.123 18 C -0.464 4.464 19 H 0.124 0.876 20 C -0.141 4.141 21 N -0.519 5.519 22 Si 0.731 3.269 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.184 1.184 26 C -0.238 4.238 27 C -0.076 4.076 28 C 0.030 3.970 29 H 0.126 0.874 30 C -0.215 4.215 31 H 0.082 0.918 32 H 0.121 0.879 33 H 0.083 0.917 34 H 0.099 0.901 35 H 0.115 0.885 36 H 0.109 0.891 37 H 0.097 0.903 38 H 0.110 0.890 39 H 0.111 0.889 40 H 0.128 0.872 41 H 0.135 0.865 42 H 0.089 0.911 43 H 0.150 0.850 44 H 0.124 0.876 45 H 0.084 0.916 46 H 0.087 0.913 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.235 -27.073 -15.702 31.321 hybrid contribution -0.036 0.490 -0.131 0.508 sum 1.200 -26.583 -15.833 30.964 Atomic orbital electron populations 1.23314 0.75981 1.03817 1.02848 1.86485 1.23663 1.33114 1.84156 1.23474 0.91782 0.81513 0.72466 1.90726 1.66774 1.36228 1.44321 1.22026 0.87910 0.98723 1.02643 0.85726 1.22708 0.98290 0.99375 0.95570 1.22656 0.96188 0.81430 1.02182 1.49105 1.53923 1.08706 1.24781 1.20748 0.80753 0.81536 0.85004 1.90776 1.48185 1.30007 1.69544 1.20402 1.00189 0.97310 0.93562 1.18704 0.99279 0.94938 1.03452 1.20391 0.97164 0.92665 0.97723 1.20146 1.01444 0.97247 1.02177 1.19121 0.93382 0.85266 0.91217 1.83568 1.43856 1.26569 1.58314 1.20773 1.00877 0.98345 1.26368 0.87637 1.24468 0.97329 0.96771 0.95498 1.69648 1.29283 1.20210 1.32738 0.86176 0.82382 0.80189 0.78118 1.19891 1.20829 1.18370 1.21220 1.02030 0.94437 1.06106 1.20565 0.96245 0.95404 0.95357 1.21509 0.96575 0.93786 0.85093 0.87364 1.22133 0.99576 1.03109 0.96692 0.91766 0.87910 0.91699 0.90123 0.88497 0.89146 0.90288 0.88965 0.88876 0.87203 0.86538 0.91106 0.84963 0.87581 0.91571 0.91287 0.92143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.56 101.05 1.07 1.27 16 2 O -0.36 -2.84 10.54 -39.26 -0.41 -3.26 16 3 C 0.47 4.48 7.13 36.00 0.26 4.73 16 4 O -0.49 -6.69 14.99 -18.75 -0.28 -6.97 16 5 C -0.09 -0.65 3.14 -90.40 -0.28 -0.94 16 6 H 0.12 0.53 7.69 -51.93 -0.40 0.13 16 7 C -0.12 -0.61 6.57 -24.85 -0.16 -0.78 16 8 C 0.10 0.57 6.96 -1.86 -0.01 0.56 16 9 N -0.63 -6.66 2.93 -161.89 -0.47 -7.14 16 10 C 0.53 7.69 7.89 -10.99 -0.09 7.61 16 11 O -0.51 -10.17 16.38 5.55 0.09 -10.08 16 12 C -0.07 -0.94 4.76 -29.04 -0.14 -1.08 16 13 C -0.16 -2.82 4.38 -104.57 -0.46 -3.28 16 14 C -0.06 -1.10 9.69 -39.61 -0.38 -1.48 16 15 C -0.19 -4.00 9.99 -39.39 -0.39 -4.39 16 16 C 0.16 3.94 6.65 -39.11 -0.26 3.68 16 17 O -0.22 -5.98 8.59 0.06 0.00 -5.98 16 18 C -0.39 -11.32 9.95 30.89 0.31 -11.01 16 19 H 0.11 3.15 5.44 -52.49 -0.29 2.86 16 20 C 0.06 1.80 5.49 -17.52 -0.10 1.70 16 21 N -0.88 -26.11 13.96 55.48 0.77 -25.34 16 22 Si 0.91 22.32 28.62 -169.99 -4.86 17.46 16 23 H -0.27 -6.66 7.11 56.52 0.40 -6.25 16 24 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 25 H -0.26 -6.39 7.11 56.52 0.40 -5.99 16 26 C -0.22 -5.00 9.17 -39.40 -0.36 -5.36 16 27 C -0.06 -1.11 9.69 -39.61 -0.38 -1.50 16 28 C 0.13 1.37 2.97 -66.87 -0.20 1.17 16 29 H 0.11 1.54 6.34 -51.92 -0.33 1.21 16 30 C -0.16 -1.34 9.30 37.16 0.35 -0.99 16 31 H 0.06 0.39 8.13 -51.92 -0.42 -0.03 16 32 H 0.10 0.32 8.14 -51.93 -0.42 -0.11 16 33 H 0.06 0.43 8.13 -51.93 -0.42 0.01 16 34 H 0.08 0.49 7.86 -51.93 -0.41 0.08 16 35 H 0.10 0.24 8.14 -51.93 -0.42 -0.19 16 36 H 0.09 0.41 7.26 -51.92 -0.38 0.04 16 37 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.09 0.95 7.85 -51.93 -0.41 0.54 16 39 H 0.09 0.90 8.08 -51.93 -0.42 0.48 16 40 H 0.11 1.63 8.06 -52.49 -0.42 1.20 16 41 H 0.12 2.26 8.06 -52.49 -0.42 1.84 16 42 H 0.28 7.63 8.31 -40.82 -0.34 7.29 16 43 H 0.13 3.16 5.64 -52.48 -0.30 2.86 16 44 H 0.11 1.80 8.06 -52.49 -0.42 1.38 16 45 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 47 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 395.36 15.07 5.96 5.96 Total: -1.00 -36.93 395.36 -7.16 -44.09 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -6.71 Total: 1.33 kcal Atomic # 6 Polarization: -8.83 SS G_CDS: -1.24 Total: -10.08 kcal Atomic # 7 Polarization: -32.78 SS G_CDS: 0.30 Total: -32.48 kcal Atomic # 8 Polarization: -25.68 SS G_CDS: -0.60 Total: -26.28 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -4.86 Total: 17.46 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -36.93 -7.16 -44.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787505829.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.196 kcal (2) G-P(sol) polarization free energy of solvation -36.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds