Wall clock time and date at job start Wed Apr 1 2020 05:30:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34230 * 116.99975 * 2 1 4 4 O 1.20824 * 119.99685 * 359.97438 * 3 2 1 5 5 C 1.50692 * 120.00027 * 179.97438 * 3 2 1 6 6 H 1.09002 * 110.37344 * 60.73084 * 5 3 2 7 7 C 1.54624 * 110.32844 * 298.54581 * 5 3 2 8 8 C 1.54938 * 103.00126 * 219.17017 * 7 5 3 9 9 N 1.48594 * 103.03215 * 37.35732 * 8 7 5 10 10 C 1.34780 * 126.98184 * 140.70913 * 9 8 7 11 11 O 1.21284 * 119.99739 * 180.02562 * 10 9 8 12 12 C 1.50695 * 120.00103 * 0.03924 * 10 9 8 13 13 C 1.50701 * 109.47151 * 180.02562 * 12 10 9 14 14 C 1.38306 * 119.92739 * 269.72587 * 13 12 10 15 15 C 1.38098 * 120.06471 * 179.72415 * 14 13 12 16 16 C 1.38886 * 119.93102 * 0.55280 * 15 14 13 17 17 O 1.35755 * 120.06934 * 179.74696 * 16 15 14 18 18 C 1.34822 * 116.99659 * 174.44333 * 17 16 15 19 19 H 1.07998 * 120.00690 * 5.05382 * 18 17 16 20 20 C 1.38653 * 119.99964 * 185.05730 * 18 17 16 21 21 N 1.31554 * 120.00650 * 179.97438 * 20 18 17 22 22 Si 1.86805 * 119.99775 * 359.97438 * 20 18 17 23 23 H 1.48503 * 109.47046 * 90.00131 * 22 20 18 24 24 H 1.48501 * 109.47212 * 210.00035 * 22 20 18 25 25 H 1.48497 * 109.47174 * 329.99962 * 22 20 18 26 26 C 1.38873 * 119.86076 * 359.72294 * 16 15 14 27 27 C 1.38102 * 119.93604 * 0.02562 * 26 16 15 28 28 C 1.47484 * 105.98411 * 320.74326 * 9 8 7 29 29 H 1.09009 * 110.07442 * 144.89983 * 28 9 8 30 30 C 1.52996 * 109.91277 * 266.08882 * 28 9 8 31 31 H 1.09008 * 109.46872 * 60.00152 * 1 2 3 32 32 H 1.08998 * 109.47105 * 179.97438 * 1 2 3 33 33 H 1.08994 * 109.47533 * 300.00453 * 1 2 3 34 34 H 1.09007 * 110.73439 * 337.59844 * 7 5 3 35 35 H 1.08996 * 110.73782 * 100.73651 * 7 5 3 36 36 H 1.09010 * 110.65922 * 155.90879 * 8 7 5 37 37 H 1.08998 * 110.66078 * 279.01712 * 8 7 5 38 38 H 1.09000 * 109.47419 * 300.00724 * 12 10 9 39 39 H 1.09003 * 109.46909 * 60.00263 * 12 10 9 40 40 H 1.07993 * 119.96584 * 0.02562 * 14 13 12 41 41 H 1.08000 * 120.03449 * 180.27363 * 15 14 13 42 42 H 0.97001 * 120.00380 * 180.02562 * 21 20 18 43 43 H 1.08003 * 120.03715 * 180.02562 * 26 16 15 44 44 H 1.07996 * 119.96978 * 180.02562 * 27 26 16 45 45 H 1.09006 * 109.46752 * 177.61545 * 30 28 9 46 46 H 1.08995 * 109.47407 * 297.61619 * 30 28 9 47 47 H 1.08993 * 109.47205 * 57.62037 * 30 28 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9718 0.7957 -0.8905 7 6 4.1385 0.6113 1.2746 8 6 5.3094 1.5497 1.6605 9 7 4.7802 2.8987 1.3315 10 6 4.9544 4.0327 2.0388 11 8 4.4618 5.0709 1.6510 12 6 5.7614 4.0106 3.3112 13 6 5.8027 5.3955 3.9040 14 6 6.8186 6.2661 3.5536 15 6 6.8559 7.5378 4.0907 16 6 5.8785 7.9382 4.9924 17 8 5.9154 9.1859 5.5261 18 6 4.8758 9.5500 6.3036 19 1 4.1042 8.8336 6.5439 20 6 4.7973 10.8443 6.7946 21 7 3.7827 11.1999 7.5528 22 14 6.1322 12.0833 6.3794 23 1 5.7708 12.8004 5.1303 24 1 6.2640 13.0599 7.4904 25 1 7.4230 11.3747 6.1876 26 6 4.8629 7.0597 5.3466 27 6 4.8281 5.7910 4.8021 28 6 4.0251 2.7431 0.0742 29 1 3.1578 3.4035 0.0745 30 6 4.9265 3.0679 -1.1186 31 1 -0.3633 0.5139 -0.8901 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3634 0.5139 0.8899 34 1 3.3888 0.5841 2.0655 35 1 4.5037 -0.3921 1.0564 36 1 5.5323 1.4691 2.7245 37 1 6.1936 1.3270 1.0634 38 1 5.3003 3.3250 4.0221 39 1 6.7762 3.6784 3.0921 40 1 7.5806 5.9528 2.8555 41 1 7.6470 8.2188 3.8133 42 1 3.7276 12.1055 7.8960 43 1 4.1011 7.3682 6.0473 44 1 4.0384 5.1075 5.0768 45 1 4.3743 2.9099 -2.0450 46 1 5.2468 4.1080 -1.0594 47 1 5.8006 2.4170 -1.1012 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787505829.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:30:20 Heat of formation + Delta-G solvation = -138.792658 kcal Electronic energy + Delta-G solvation = -29925.512399 eV Core-core repulsion = 25652.521272 eV Total energy + Delta-G solvation = -4272.991127 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.04627 -41.12694 -40.58134 -38.93967 -38.06983 -37.50489 -34.54496 -33.65637 -32.58294 -32.05528 -31.81935 -29.25892 -28.36142 -27.41171 -26.81004 -24.08604 -23.71852 -23.40257 -22.27229 -21.16910 -20.01874 -19.81335 -19.12271 -18.89109 -18.18306 -17.75911 -17.23052 -17.07851 -16.78428 -16.21967 -16.16554 -15.68618 -15.64352 -15.24362 -15.11872 -14.90916 -14.58611 -14.39931 -14.28896 -14.10367 -14.08289 -13.94328 -13.77994 -13.44997 -13.10443 -13.05235 -12.82236 -12.77335 -12.59261 -12.46001 -12.41438 -12.33659 -12.02347 -11.94201 -11.87982 -11.79000 -11.44942 -11.30422 -10.97766 -10.81909 -9.80949 -9.72116 -9.00216 -8.52107 -6.24904 0.56561 0.58852 1.05957 1.28561 1.33835 1.50116 1.55700 1.69775 2.04335 2.26559 2.75362 3.01709 3.15249 3.22761 3.49716 3.67593 3.81505 4.00572 4.05002 4.10920 4.15356 4.23965 4.26803 4.27588 4.30854 4.41396 4.43570 4.54907 4.56001 4.65809 4.66799 4.70362 4.75976 4.83087 4.96077 5.01578 5.06361 5.13555 5.23167 5.24730 5.29718 5.35033 5.43103 5.54867 5.71842 5.77616 5.89292 6.22796 6.55819 6.62475 6.81851 7.25089 7.56228 8.59827 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.018570 B = 0.002066 C = 0.001972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.447242 B =13549.258376 C =14194.963825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.351 6.351 3 C 0.464 3.536 4 O -0.546 6.546 5 C -0.085 4.085 6 H 0.164 0.836 7 C -0.114 4.114 8 C 0.091 3.909 9 N -0.624 5.624 10 C 0.525 3.475 11 O -0.585 6.585 12 C -0.071 4.071 13 C -0.138 4.138 14 C -0.057 4.057 15 C -0.192 4.192 16 C 0.118 3.882 17 O -0.245 6.245 18 C -0.401 4.401 19 H 0.077 0.923 20 C 0.007 3.993 21 N -0.924 5.924 22 Si 0.974 3.026 23 H -0.268 1.268 24 H -0.263 1.263 25 H -0.261 1.261 26 C -0.239 4.239 27 C -0.067 4.067 28 C 0.126 3.874 29 H 0.056 0.944 30 C -0.149 4.149 31 H 0.059 0.941 32 H 0.138 0.862 33 H 0.053 0.947 34 H 0.066 0.934 35 H 0.138 0.862 36 H 0.111 0.889 37 H 0.113 0.887 38 H 0.124 0.876 39 H 0.140 0.860 40 H 0.156 0.844 41 H 0.130 0.870 42 H 0.285 0.715 43 H 0.105 0.895 44 H 0.128 0.872 45 H 0.077 0.923 46 H 0.036 0.964 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.824 -33.134 -17.773 37.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.267 6.267 3 C 0.308 3.692 4 O -0.436 6.436 5 C -0.104 4.104 6 H 0.181 0.819 7 C -0.152 4.152 8 C -0.029 4.029 9 N -0.358 5.358 10 C 0.316 3.684 11 O -0.464 6.464 12 C -0.110 4.110 13 C -0.139 4.139 14 C -0.075 4.075 15 C -0.211 4.211 16 C 0.069 3.931 17 O -0.153 6.153 18 C -0.477 4.477 19 H 0.095 0.905 20 C -0.191 4.191 21 N -0.565 5.565 22 Si 0.796 3.204 23 H -0.193 1.193 24 H -0.188 1.188 25 H -0.185 1.185 26 C -0.258 4.258 27 C -0.085 4.085 28 C 0.022 3.978 29 H 0.074 0.926 30 C -0.207 4.207 31 H 0.078 0.922 32 H 0.156 0.844 33 H 0.072 0.928 34 H 0.085 0.915 35 H 0.156 0.844 36 H 0.129 0.871 37 H 0.131 0.869 38 H 0.142 0.858 39 H 0.158 0.842 40 H 0.174 0.826 41 H 0.148 0.852 42 H 0.095 0.905 43 H 0.123 0.877 44 H 0.146 0.854 45 H 0.095 0.905 46 H 0.055 0.945 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 4.402 -31.888 -17.805 36.786 hybrid contribution -1.092 1.509 0.317 1.890 sum 3.310 -30.379 -17.487 35.209 Atomic orbital electron populations 1.23546 0.75089 1.05857 1.02120 1.86485 1.24578 1.32081 1.83545 1.24116 0.92973 0.81140 0.70931 1.90725 1.68091 1.37951 1.46825 1.22119 0.85942 0.96747 1.05621 0.81890 1.22795 0.97581 1.01058 0.93751 1.23138 0.97279 0.78170 1.04327 1.49112 1.52828 1.09686 1.24223 1.20988 0.80313 0.81618 0.85509 1.90766 1.51329 1.32885 1.71416 1.20526 1.02983 0.94444 0.93011 1.19316 0.96901 0.97254 1.00451 1.20953 0.98120 0.91219 0.97202 1.20526 1.00655 0.98925 1.01037 1.19684 0.95429 0.84770 0.93224 1.83505 1.43489 1.28430 1.59836 1.20701 1.01245 0.98459 1.27299 0.90523 1.25334 0.99788 0.98521 0.95433 1.69734 1.31252 1.21110 1.34428 0.85176 0.79067 0.77708 0.78472 1.19344 1.18782 1.18498 1.21234 1.01648 0.96280 1.06678 1.20890 0.97628 0.94281 0.95692 1.21528 0.95332 0.95157 0.85766 0.92582 1.22071 1.00511 1.01782 0.96355 0.92226 0.84429 0.92841 0.91480 0.84389 0.87100 0.86876 0.85805 0.84241 0.82642 0.85180 0.90530 0.87734 0.85408 0.90459 0.94505 0.88832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.56 113.37 1.20 1.49 16 2 O -0.35 -4.86 10.54 -51.42 -0.54 -5.40 16 3 C 0.46 8.39 7.13 71.23 0.51 8.90 16 4 O -0.55 -15.43 14.99 21.97 0.33 -15.10 16 5 C -0.08 -0.90 3.14 -10.65 -0.03 -0.94 16 6 H 0.16 0.52 7.69 -2.39 -0.02 0.50 16 7 C -0.11 -0.57 6.57 31.81 0.21 -0.36 16 8 C 0.09 0.51 6.96 86.64 0.60 1.12 16 9 N -0.62 -11.28 2.93 -784.49 -2.30 -13.58 16 10 C 0.53 14.02 7.89 87.65 0.69 14.71 16 11 O -0.58 -23.45 16.38 -3.04 -0.05 -23.50 16 12 C -0.07 -1.44 4.76 29.10 0.14 -1.30 16 13 C -0.14 -4.45 4.38 -19.83 -0.09 -4.54 16 14 C -0.06 -1.89 9.69 22.25 0.22 -1.68 16 15 C -0.19 -7.98 9.99 22.39 0.22 -7.75 16 16 C 0.12 5.99 6.65 22.58 0.15 6.14 16 17 O -0.24 -14.21 8.59 -22.71 -0.19 -14.40 16 18 C -0.40 -25.09 9.95 67.92 0.68 -24.41 16 19 H 0.08 5.06 5.44 -2.91 -0.02 5.04 16 20 C 0.01 0.44 5.49 84.83 0.47 0.91 16 21 N -0.92 -57.66 13.96 21.61 0.30 -57.36 16 22 Si 0.97 47.63 28.62 68.60 1.96 49.59 16 23 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 24 H -0.26 -11.88 7.11 99.48 0.71 -11.17 16 25 H -0.26 -12.64 7.11 99.48 0.71 -11.93 16 26 C -0.24 -11.61 9.17 22.39 0.21 -11.41 16 27 C -0.07 -2.59 9.69 22.25 0.22 -2.37 16 28 C 0.13 2.39 2.97 45.14 0.13 2.52 16 29 H 0.06 1.69 6.34 -2.38 -0.02 1.67 16 30 C -0.15 -2.21 9.30 71.98 0.67 -1.54 16 31 H 0.06 0.71 8.13 -2.38 -0.02 0.69 16 32 H 0.14 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.05 0.71 8.13 -2.39 -0.02 0.69 16 34 H 0.07 0.56 7.86 -2.38 -0.02 0.54 16 35 H 0.14 -0.33 8.14 -2.39 -0.02 -0.35 16 36 H 0.11 0.24 7.26 -2.38 -0.02 0.23 16 37 H 0.11 0.01 8.14 -2.39 -0.02 -0.01 16 38 H 0.12 1.84 7.85 -2.39 -0.02 1.82 16 39 H 0.14 1.67 8.08 -2.39 -0.02 1.65 16 40 H 0.16 3.77 8.06 -2.91 -0.02 3.75 16 41 H 0.13 4.94 8.06 -2.91 -0.02 4.91 16 42 H 0.29 16.24 8.31 -92.71 -0.77 15.47 16 43 H 0.10 5.56 5.64 -2.91 -0.02 5.54 16 44 H 0.13 4.28 8.06 -2.91 -0.02 4.26 16 45 H 0.08 0.95 8.14 -2.38 -0.02 0.93 16 46 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 47 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 Total: -1.00 -92.76 395.36 6.68 -86.09 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: 0.98 Total: 14.18 kcal Atomic # 6 Polarization: -26.69 SS G_CDS: 6.18 Total: -20.51 kcal Atomic # 7 Polarization: -68.94 SS G_CDS: -2.00 Total: -70.94 kcal Atomic # 8 Polarization: -57.95 SS G_CDS: -0.46 Total: -58.41 kcal Atomic # 14 Polarization: 47.63 SS G_CDS: 1.96 Total: 49.59 kcal Total: -92.76 6.68 -86.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787505829.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.706 kcal (2) G-P(sol) polarization free energy of solvation -92.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds