Wall clock time and date at job start Wed Apr 1 2020 05:30:20
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.45205 * 1
3 3 C 1.34230 * 116.99975 * 2 1
4 4 O 1.20824 * 119.99685 * 359.97438 * 3 2 1
5 5 C 1.50692 * 120.00027 * 179.97438 * 3 2 1
6 6 H 1.09002 * 110.37344 * 60.73084 * 5 3 2
7 7 C 1.54624 * 110.32844 * 298.54581 * 5 3 2
8 8 C 1.54938 * 103.00126 * 219.17017 * 7 5 3
9 9 N 1.48594 * 103.03215 * 37.35732 * 8 7 5
10 10 C 1.34780 * 126.98184 * 140.70913 * 9 8 7
11 11 O 1.21284 * 119.99739 * 180.02562 * 10 9 8
12 12 C 1.50695 * 120.00103 * 0.03924 * 10 9 8
13 13 C 1.50701 * 109.47151 * 180.02562 * 12 10 9
14 14 C 1.38306 * 119.92739 * 269.72587 * 13 12 10
15 15 C 1.38098 * 120.06471 * 179.72415 * 14 13 12
16 16 C 1.38886 * 119.93102 * 0.55280 * 15 14 13
17 17 O 1.35755 * 120.06934 * 179.74696 * 16 15 14
18 18 C 1.34822 * 116.99659 * 174.44333 * 17 16 15
19 19 H 1.07998 * 120.00690 * 5.05382 * 18 17 16
20 20 C 1.38653 * 119.99964 * 185.05730 * 18 17 16
21 21 N 1.31554 * 120.00650 * 179.97438 * 20 18 17
22 22 Si 1.86805 * 119.99775 * 359.97438 * 20 18 17
23 23 H 1.48503 * 109.47046 * 90.00131 * 22 20 18
24 24 H 1.48501 * 109.47212 * 210.00035 * 22 20 18
25 25 H 1.48497 * 109.47174 * 329.99962 * 22 20 18
26 26 C 1.38873 * 119.86076 * 359.72294 * 16 15 14
27 27 C 1.38102 * 119.93604 * 0.02562 * 26 16 15
28 28 C 1.47484 * 105.98411 * 320.74326 * 9 8 7
29 29 H 1.09009 * 110.07442 * 144.89983 * 28 9 8
30 30 C 1.52996 * 109.91277 * 266.08882 * 28 9 8
31 31 H 1.09008 * 109.46872 * 60.00152 * 1 2 3
32 32 H 1.08998 * 109.47105 * 179.97438 * 1 2 3
33 33 H 1.08994 * 109.47533 * 300.00453 * 1 2 3
34 34 H 1.09007 * 110.73439 * 337.59844 * 7 5 3
35 35 H 1.08996 * 110.73782 * 100.73651 * 7 5 3
36 36 H 1.09010 * 110.65922 * 155.90879 * 8 7 5
37 37 H 1.08998 * 110.66078 * 279.01712 * 8 7 5
38 38 H 1.09000 * 109.47419 * 300.00724 * 12 10 9
39 39 H 1.09003 * 109.46909 * 60.00263 * 12 10 9
40 40 H 1.07993 * 119.96584 * 0.02562 * 14 13 12
41 41 H 1.08000 * 120.03449 * 180.27363 * 15 14 13
42 42 H 0.97001 * 120.00380 * 180.02562 * 21 20 18
43 43 H 1.08003 * 120.03715 * 180.02562 * 26 16 15
44 44 H 1.07996 * 119.96978 * 180.02562 * 27 26 16
45 45 H 1.09006 * 109.46752 * 177.61545 * 30 28 9
46 46 H 1.08995 * 109.47407 * 297.61619 * 30 28 9
47 47 H 1.08993 * 109.47205 * 57.62037 * 30 28 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4520 0.0000 0.0000
3 6 2.0614 1.1960 0.0000
4 8 1.4033 2.2093 -0.0005
5 6 3.5663 1.2749 0.0006
6 1 3.9718 0.7957 -0.8905
7 6 4.1385 0.6113 1.2746
8 6 5.3094 1.5497 1.6605
9 7 4.7802 2.8987 1.3315
10 6 4.9544 4.0327 2.0388
11 8 4.4618 5.0709 1.6510
12 6 5.7614 4.0106 3.3112
13 6 5.8027 5.3955 3.9040
14 6 6.8186 6.2661 3.5536
15 6 6.8559 7.5378 4.0907
16 6 5.8785 7.9382 4.9924
17 8 5.9154 9.1859 5.5261
18 6 4.8758 9.5500 6.3036
19 1 4.1042 8.8336 6.5439
20 6 4.7973 10.8443 6.7946
21 7 3.7827 11.1999 7.5528
22 14 6.1322 12.0833 6.3794
23 1 5.7708 12.8004 5.1303
24 1 6.2640 13.0599 7.4904
25 1 7.4230 11.3747 6.1876
26 6 4.8629 7.0597 5.3466
27 6 4.8281 5.7910 4.8021
28 6 4.0251 2.7431 0.0742
29 1 3.1578 3.4035 0.0745
30 6 4.9265 3.0679 -1.1186
31 1 -0.3633 0.5139 -0.8901
32 1 -0.3633 -1.0276 -0.0005
33 1 -0.3634 0.5139 0.8899
34 1 3.3888 0.5841 2.0655
35 1 4.5037 -0.3921 1.0564
36 1 5.5323 1.4691 2.7245
37 1 6.1936 1.3270 1.0634
38 1 5.3003 3.3250 4.0221
39 1 6.7762 3.6784 3.0921
40 1 7.5806 5.9528 2.8555
41 1 7.6470 8.2188 3.8133
42 1 3.7276 12.1055 7.8960
43 1 4.1011 7.3682 6.0473
44 1 4.0384 5.1075 5.0768
45 1 4.3743 2.9099 -2.0450
46 1 5.2468 4.1080 -1.0594
47 1 5.8006 2.4170 -1.1012
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000787505829.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:30:20
Heat of formation + Delta-G solvation = -138.792658 kcal
Electronic energy + Delta-G solvation = -29925.512399 eV
Core-core repulsion = 25652.521272 eV
Total energy + Delta-G solvation = -4272.991127 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 347.161 amu
Computer time = 1.05 seconds
Orbital eigenvalues (eV)
-42.04627 -41.12694 -40.58134 -38.93967 -38.06983 -37.50489 -34.54496 -33.65637
-32.58294 -32.05528 -31.81935 -29.25892 -28.36142 -27.41171 -26.81004 -24.08604
-23.71852 -23.40257 -22.27229 -21.16910 -20.01874 -19.81335 -19.12271 -18.89109
-18.18306 -17.75911 -17.23052 -17.07851 -16.78428 -16.21967 -16.16554 -15.68618
-15.64352 -15.24362 -15.11872 -14.90916 -14.58611 -14.39931 -14.28896 -14.10367
-14.08289 -13.94328 -13.77994 -13.44997 -13.10443 -13.05235 -12.82236 -12.77335
-12.59261 -12.46001 -12.41438 -12.33659 -12.02347 -11.94201 -11.87982 -11.79000
-11.44942 -11.30422 -10.97766 -10.81909 -9.80949 -9.72116 -9.00216 -8.52107
-6.24904 0.56561 0.58852 1.05957 1.28561 1.33835 1.50116 1.55700
1.69775 2.04335 2.26559 2.75362 3.01709 3.15249 3.22761 3.49716
3.67593 3.81505 4.00572 4.05002 4.10920 4.15356 4.23965 4.26803
4.27588 4.30854 4.41396 4.43570 4.54907 4.56001 4.65809 4.66799
4.70362 4.75976 4.83087 4.96077 5.01578 5.06361 5.13555 5.23167
5.24730 5.29718 5.35033 5.43103 5.54867 5.71842 5.77616 5.89292
6.22796 6.55819 6.62475 6.81851 7.25089 7.56228 8.59827
Molecular weight = 347.16amu
Principal moments of inertia in cm(-1)
A = 0.018570 B = 0.002066 C = 0.001972
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1507.447242 B =13549.258376 C =14194.963825
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.027 3.973
2 O -0.351 6.351
3 C 0.464 3.536
4 O -0.546 6.546
5 C -0.085 4.085
6 H 0.164 0.836
7 C -0.114 4.114
8 C 0.091 3.909
9 N -0.624 5.624
10 C 0.525 3.475
11 O -0.585 6.585
12 C -0.071 4.071
13 C -0.138 4.138
14 C -0.057 4.057
15 C -0.192 4.192
16 C 0.118 3.882
17 O -0.245 6.245
18 C -0.401 4.401
19 H 0.077 0.923
20 C 0.007 3.993
21 N -0.924 5.924
22 Si 0.974 3.026
23 H -0.268 1.268
24 H -0.263 1.263
25 H -0.261 1.261
26 C -0.239 4.239
27 C -0.067 4.067
28 C 0.126 3.874
29 H 0.056 0.944
30 C -0.149 4.149
31 H 0.059 0.941
32 H 0.138 0.862
33 H 0.053 0.947
34 H 0.066 0.934
35 H 0.138 0.862
36 H 0.111 0.889
37 H 0.113 0.887
38 H 0.124 0.876
39 H 0.140 0.860
40 H 0.156 0.844
41 H 0.130 0.870
42 H 0.285 0.715
43 H 0.105 0.895
44 H 0.128 0.872
45 H 0.077 0.923
46 H 0.036 0.964
47 H 0.093 0.907
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.824 -33.134 -17.773 37.908
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.066 4.066
2 O -0.267 6.267
3 C 0.308 3.692
4 O -0.436 6.436
5 C -0.104 4.104
6 H 0.181 0.819
7 C -0.152 4.152
8 C -0.029 4.029
9 N -0.358 5.358
10 C 0.316 3.684
11 O -0.464 6.464
12 C -0.110 4.110
13 C -0.139 4.139
14 C -0.075 4.075
15 C -0.211 4.211
16 C 0.069 3.931
17 O -0.153 6.153
18 C -0.477 4.477
19 H 0.095 0.905
20 C -0.191 4.191
21 N -0.565 5.565
22 Si 0.796 3.204
23 H -0.193 1.193
24 H -0.188 1.188
25 H -0.185 1.185
26 C -0.258 4.258
27 C -0.085 4.085
28 C 0.022 3.978
29 H 0.074 0.926
30 C -0.207 4.207
31 H 0.078 0.922
32 H 0.156 0.844
33 H 0.072 0.928
34 H 0.085 0.915
35 H 0.156 0.844
36 H 0.129 0.871
37 H 0.131 0.869
38 H 0.142 0.858
39 H 0.158 0.842
40 H 0.174 0.826
41 H 0.148 0.852
42 H 0.095 0.905
43 H 0.123 0.877
44 H 0.146 0.854
45 H 0.095 0.905
46 H 0.055 0.945
47 H 0.112 0.888
Dipole moment (debyes) X Y Z Total
from point charges 4.402 -31.888 -17.805 36.786
hybrid contribution -1.092 1.509 0.317 1.890
sum 3.310 -30.379 -17.487 35.209
Atomic orbital electron populations
1.23546 0.75089 1.05857 1.02120 1.86485 1.24578 1.32081 1.83545
1.24116 0.92973 0.81140 0.70931 1.90725 1.68091 1.37951 1.46825
1.22119 0.85942 0.96747 1.05621 0.81890 1.22795 0.97581 1.01058
0.93751 1.23138 0.97279 0.78170 1.04327 1.49112 1.52828 1.09686
1.24223 1.20988 0.80313 0.81618 0.85509 1.90766 1.51329 1.32885
1.71416 1.20526 1.02983 0.94444 0.93011 1.19316 0.96901 0.97254
1.00451 1.20953 0.98120 0.91219 0.97202 1.20526 1.00655 0.98925
1.01037 1.19684 0.95429 0.84770 0.93224 1.83505 1.43489 1.28430
1.59836 1.20701 1.01245 0.98459 1.27299 0.90523 1.25334 0.99788
0.98521 0.95433 1.69734 1.31252 1.21110 1.34428 0.85176 0.79067
0.77708 0.78472 1.19344 1.18782 1.18498 1.21234 1.01648 0.96280
1.06678 1.20890 0.97628 0.94281 0.95692 1.21528 0.95332 0.95157
0.85766 0.92582 1.22071 1.00511 1.01782 0.96355 0.92226 0.84429
0.92841 0.91480 0.84389 0.87100 0.86876 0.85805 0.84241 0.82642
0.85180 0.90530 0.87734 0.85408 0.90459 0.94505 0.88832
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.30 10.56 113.37 1.20 1.49 16
2 O -0.35 -4.86 10.54 -51.42 -0.54 -5.40 16
3 C 0.46 8.39 7.13 71.23 0.51 8.90 16
4 O -0.55 -15.43 14.99 21.97 0.33 -15.10 16
5 C -0.08 -0.90 3.14 -10.65 -0.03 -0.94 16
6 H 0.16 0.52 7.69 -2.39 -0.02 0.50 16
7 C -0.11 -0.57 6.57 31.81 0.21 -0.36 16
8 C 0.09 0.51 6.96 86.64 0.60 1.12 16
9 N -0.62 -11.28 2.93 -784.49 -2.30 -13.58 16
10 C 0.53 14.02 7.89 87.65 0.69 14.71 16
11 O -0.58 -23.45 16.38 -3.04 -0.05 -23.50 16
12 C -0.07 -1.44 4.76 29.10 0.14 -1.30 16
13 C -0.14 -4.45 4.38 -19.83 -0.09 -4.54 16
14 C -0.06 -1.89 9.69 22.25 0.22 -1.68 16
15 C -0.19 -7.98 9.99 22.39 0.22 -7.75 16
16 C 0.12 5.99 6.65 22.58 0.15 6.14 16
17 O -0.24 -14.21 8.59 -22.71 -0.19 -14.40 16
18 C -0.40 -25.09 9.95 67.92 0.68 -24.41 16
19 H 0.08 5.06 5.44 -2.91 -0.02 5.04 16
20 C 0.01 0.44 5.49 84.83 0.47 0.91 16
21 N -0.92 -57.66 13.96 21.61 0.30 -57.36 16
22 Si 0.97 47.63 28.62 68.60 1.96 49.59 16
23 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16
24 H -0.26 -11.88 7.11 99.48 0.71 -11.17 16
25 H -0.26 -12.64 7.11 99.48 0.71 -11.93 16
26 C -0.24 -11.61 9.17 22.39 0.21 -11.41 16
27 C -0.07 -2.59 9.69 22.25 0.22 -2.37 16
28 C 0.13 2.39 2.97 45.14 0.13 2.52 16
29 H 0.06 1.69 6.34 -2.38 -0.02 1.67 16
30 C -0.15 -2.21 9.30 71.98 0.67 -1.54 16
31 H 0.06 0.71 8.13 -2.38 -0.02 0.69 16
32 H 0.14 0.50 8.14 -2.39 -0.02 0.48 16
33 H 0.05 0.71 8.13 -2.39 -0.02 0.69 16
34 H 0.07 0.56 7.86 -2.38 -0.02 0.54 16
35 H 0.14 -0.33 8.14 -2.39 -0.02 -0.35 16
36 H 0.11 0.24 7.26 -2.38 -0.02 0.23 16
37 H 0.11 0.01 8.14 -2.39 -0.02 -0.01 16
38 H 0.12 1.84 7.85 -2.39 -0.02 1.82 16
39 H 0.14 1.67 8.08 -2.39 -0.02 1.65 16
40 H 0.16 3.77 8.06 -2.91 -0.02 3.75 16
41 H 0.13 4.94 8.06 -2.91 -0.02 4.91 16
42 H 0.29 16.24 8.31 -92.71 -0.77 15.47 16
43 H 0.10 5.56 5.64 -2.91 -0.02 5.54 16
44 H 0.13 4.28 8.06 -2.91 -0.02 4.26 16
45 H 0.08 0.95 8.14 -2.38 -0.02 0.93 16
46 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16
47 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16
Total: -1.00 -92.76 395.36 6.68 -86.09
By element:
Atomic # 1 Polarization: 13.19 SS G_CDS: 0.98 Total: 14.18 kcal
Atomic # 6 Polarization: -26.69 SS G_CDS: 6.18 Total: -20.51 kcal
Atomic # 7 Polarization: -68.94 SS G_CDS: -2.00 Total: -70.94 kcal
Atomic # 8 Polarization: -57.95 SS G_CDS: -0.46 Total: -58.41 kcal
Atomic # 14 Polarization: 47.63 SS G_CDS: 1.96 Total: 49.59 kcal
Total: -92.76 6.68 -86.09 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000787505829.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -52.706 kcal
(2) G-P(sol) polarization free energy of solvation -92.763 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.469 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.677 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.087 kcal
(6) G-S(sol) free energy of system = (1) + (5) -138.793 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.05 seconds