Wall clock time and date at job start Wed Apr 1 2020 05:30:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34225 * 116.99662 * 2 1 4 4 O 1.20827 * 120.00211 * 359.97438 * 3 2 1 5 5 C 1.50702 * 119.99952 * 179.97438 * 3 2 1 6 6 H 1.08997 * 110.64082 * 336.89148 * 5 3 2 7 7 C 1.55153 * 110.72106 * 213.74522 * 5 3 2 8 8 C 1.54915 * 101.58307 * 205.95741 * 7 5 3 9 9 N 1.47423 * 104.83226 * 37.01001 * 8 7 5 10 10 C 1.34771 * 125.64975 * 155.83190 * 9 8 7 11 11 O 1.21284 * 120.00377 * 180.02562 * 10 9 8 12 12 C 1.50700 * 119.99737 * 0.03004 * 10 9 8 13 13 C 1.50708 * 109.47198 * 179.97438 * 12 10 9 14 14 C 1.38329 * 119.96247 * 89.99688 * 13 12 10 15 15 C 1.38283 * 120.13338 * 179.97438 * 14 13 12 16 16 C 1.38117 * 120.07016 * 0.27932 * 15 14 13 17 17 C 1.38866 * 119.92872 * 359.44841 * 16 15 14 18 18 O 1.35756 * 120.06431 * 180.27695 * 17 16 15 19 19 C 1.34820 * 117.00323 * 354.41580 * 18 17 16 20 20 H 1.08004 * 120.00049 * 5.13170 * 19 18 17 21 21 C 1.38656 * 120.00278 * 185.13375 * 19 18 17 22 22 N 1.31555 * 119.99658 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00268 * 180.02562 * 21 19 18 24 24 H 1.48493 * 109.47270 * 359.97438 * 23 21 19 25 25 H 1.48492 * 109.46969 * 120.00388 * 23 21 19 26 26 H 1.48507 * 109.46974 * 239.99948 * 23 21 19 27 27 C 1.38078 * 119.96486 * 269.98081 * 13 12 10 28 28 C 1.47025 * 108.70142 * 336.10357 * 9 8 7 29 29 H 1.09002 * 109.87802 * 241.41171 * 28 9 8 30 30 C 1.53001 * 109.88503 * 120.25013 * 28 9 8 31 31 H 1.08990 * 109.47478 * 300.00464 * 1 2 3 32 32 H 1.09000 * 109.47045 * 60.00466 * 1 2 3 33 33 H 1.08999 * 109.46725 * 180.02562 * 1 2 3 34 34 H 1.09004 * 110.99879 * 87.88803 * 7 5 3 35 35 H 1.09002 * 111.03985 * 324.04947 * 7 5 3 36 36 H 1.09005 * 110.36706 * 278.17305 * 8 7 5 37 37 H 1.08997 * 110.45588 * 155.89846 * 8 7 5 38 38 H 1.09001 * 109.47462 * 59.99858 * 12 10 9 39 39 H 1.09003 * 109.47324 * 299.99422 * 12 10 9 40 40 H 1.07998 * 119.93110 * 0.02562 * 14 13 12 41 41 H 1.07994 * 119.95919 * 180.02562 * 15 14 13 42 42 H 1.08001 * 120.03679 * 179.70045 * 16 15 14 43 43 H 0.97003 * 119.99825 * 180.02562 * 22 21 19 44 44 H 1.08002 * 120.03537 * 0.03985 * 27 13 12 45 45 H 1.09002 * 109.47477 * 56.71519 * 30 28 9 46 46 H 1.08999 * 109.47130 * 176.72435 * 30 28 9 47 47 H 1.09008 * 109.46509 * 296.72065 * 30 28 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9990 0.3583 0.4013 7 6 4.0510 2.5089 0.8067 8 6 5.4246 2.7905 0.1482 9 7 5.2245 2.4974 -1.2826 10 6 5.9493 3.0077 -2.2978 11 8 5.6945 2.6954 -3.4418 12 6 7.0763 3.9663 -2.0116 13 6 7.7213 4.3848 -3.3078 14 6 7.2544 5.4975 -3.9841 15 6 7.8439 5.8850 -5.1734 16 6 8.8974 5.1583 -5.6927 17 6 9.3720 4.0440 -5.0133 18 8 10.4109 3.3310 -5.5183 19 6 10.8619 3.6866 -6.7380 20 1 10.4550 4.5568 -7.2317 21 6 11.8481 2.9352 -7.3588 22 7 12.3434 1.8750 -6.7577 23 14 12.4735 3.4284 -9.0485 24 1 11.7596 4.6482 -9.5040 25 1 13.9306 3.7051 -8.9756 26 1 12.2271 2.3233 -10.0095 27 6 8.7777 3.6573 -3.8189 28 6 4.0991 1.5612 -1.4191 29 1 4.4420 0.6339 -1.8782 30 6 2.9980 2.1922 -2.2737 31 1 -0.3634 0.5138 0.8898 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 4.1666 2.2647 1.8627 35 1 3.3740 3.3530 0.6748 36 1 6.1877 2.1342 0.5668 37 1 5.7062 3.8345 0.2859 38 1 7.8172 3.4776 -1.3788 39 1 6.6845 4.8454 -1.4999 40 1 6.4284 6.0653 -3.5819 41 1 7.4775 6.7545 -5.6988 42 1 9.3543 5.4586 -6.6241 43 1 13.0336 1.3495 -7.1919 44 1 9.1415 2.7884 -3.2906 45 1 3.4086 2.4785 -3.2419 46 1 2.1930 1.4717 -2.4190 47 1 2.6078 3.0760 -1.7687 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787506217.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:30:30 Heat of formation + Delta-G solvation = -115.418002 kcal Electronic energy + Delta-G solvation = -30035.454927 eV Core-core repulsion = 25763.477401 eV Total energy + Delta-G solvation = -4271.977526 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.41774 -40.04182 -38.93547 -37.78242 -36.69447 -36.28342 -32.88842 -32.24470 -31.72546 -31.40329 -29.16170 -28.55014 -27.07058 -26.46339 -25.21330 -23.55576 -22.98151 -21.61046 -21.01496 -20.19945 -19.23902 -18.05096 -17.55982 -17.30053 -17.00184 -16.88006 -16.69330 -15.83592 -15.58842 -15.02441 -14.80036 -14.36693 -14.29860 -14.07497 -13.85496 -13.75226 -13.49180 -13.44262 -13.10694 -12.83244 -12.69911 -12.48121 -12.41763 -12.40330 -12.31149 -11.99202 -11.77377 -11.50446 -11.35842 -11.26798 -11.23136 -11.15491 -10.80304 -10.72279 -10.69821 -10.55705 -10.38294 -9.68009 -9.27407 -8.81806 -8.78338 -8.01025 -7.15674 -6.38708 -3.97438 1.71999 2.09194 2.23745 2.45139 2.74762 2.92483 3.16310 3.18202 3.23398 3.88644 3.96781 4.01780 4.32317 4.55583 4.63683 4.64932 4.69444 4.77472 4.84705 4.89419 5.00476 5.09621 5.10343 5.16547 5.20436 5.24120 5.28396 5.32963 5.45736 5.52480 5.66191 5.71878 5.78811 5.80986 5.91417 5.98972 6.09056 6.23137 6.26168 6.39810 6.71621 6.97598 7.13519 7.32180 7.32366 7.38406 7.43222 7.50182 7.88722 8.06669 8.26040 9.07328 9.78532 10.79744 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.020760 B = 0.002003 C = 0.001951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.411049 B =13976.402028 C =14349.853780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.358 6.358 3 C 0.477 3.523 4 O -0.498 6.498 5 C -0.097 4.097 6 H 0.118 0.882 7 C -0.120 4.120 8 C 0.100 3.900 9 N -0.624 5.624 10 C 0.533 3.467 11 O -0.511 6.511 12 C -0.088 4.088 13 C -0.034 4.034 14 C -0.195 4.195 15 C -0.075 4.075 16 C -0.230 4.230 17 C 0.154 3.846 18 O -0.180 6.180 19 C -0.389 4.389 20 H 0.092 0.908 21 C 0.038 3.962 22 N -0.864 5.864 23 Si 0.941 3.059 24 H -0.267 1.267 25 H -0.276 1.276 26 H -0.276 1.276 27 C -0.173 4.173 28 C 0.154 3.846 29 H 0.088 0.912 30 C -0.174 4.174 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.102 0.898 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.077 0.923 37 H 0.086 0.914 38 H 0.100 0.900 39 H 0.098 0.902 40 H 0.102 0.898 41 H 0.107 0.893 42 H 0.126 0.874 43 H 0.268 0.732 44 H 0.114 0.886 45 H 0.082 0.918 46 H 0.056 0.944 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.511 -0.869 18.281 26.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.274 6.274 3 C 0.320 3.680 4 O -0.385 6.385 5 C -0.117 4.117 6 H 0.136 0.864 7 C -0.158 4.158 8 C -0.023 4.023 9 N -0.361 5.361 10 C 0.322 3.678 11 O -0.384 6.384 12 C -0.127 4.127 13 C -0.035 4.035 14 C -0.214 4.214 15 C -0.093 4.093 16 C -0.249 4.249 17 C 0.101 3.899 18 O -0.084 6.084 19 C -0.466 4.466 20 H 0.109 0.891 21 C -0.166 4.166 22 N -0.500 5.500 23 Si 0.765 3.235 24 H -0.191 1.191 25 H -0.202 1.202 26 H -0.202 1.202 27 C -0.192 4.192 28 C 0.050 3.950 29 H 0.106 0.894 30 C -0.232 4.232 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.121 0.879 34 H 0.111 0.889 35 H 0.113 0.887 36 H 0.095 0.905 37 H 0.104 0.896 38 H 0.118 0.882 39 H 0.116 0.884 40 H 0.120 0.880 41 H 0.125 0.875 42 H 0.144 0.856 43 H 0.078 0.922 44 H 0.132 0.868 45 H 0.101 0.899 46 H 0.075 0.925 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -19.508 -1.079 17.588 26.288 hybrid contribution -0.014 0.206 -0.812 0.838 sum -19.522 -0.872 16.777 25.755 Atomic orbital electron populations 1.23303 0.76036 1.03889 1.02679 1.86526 1.23661 1.33301 1.83920 1.23181 0.91309 0.81478 0.72082 1.90675 1.66884 1.36237 1.44733 1.22149 0.88245 1.02549 0.98711 0.86380 1.22880 0.96830 0.96760 0.99304 1.22361 0.96938 1.02326 0.80662 1.48603 1.33333 1.47443 1.06742 1.20490 0.82441 0.81037 0.83786 1.90764 1.68145 1.59106 1.20355 1.20577 0.95793 0.98574 0.97788 1.18660 0.95132 0.95288 0.94410 1.20349 1.02996 0.99953 0.98151 1.20676 0.95338 0.98198 0.95116 1.21179 1.01733 0.98873 1.03143 1.19271 0.87601 0.90565 0.92477 1.83972 1.39952 1.51680 1.32810 1.21361 1.20723 1.12463 0.92023 0.89087 1.25277 0.96383 0.95324 0.99634 1.70052 1.26504 1.15550 1.37888 0.85652 0.78718 0.78672 0.80408 1.19134 1.20211 1.20196 1.19935 0.99645 1.02191 0.97457 1.21231 0.87432 0.93889 0.92407 0.89375 1.22341 0.97289 1.01486 1.02107 0.91802 0.91721 0.87940 0.88888 0.88700 0.90515 0.89557 0.88227 0.88407 0.87969 0.87495 0.85623 0.92186 0.86829 0.89931 0.92490 0.91189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 10.56 101.05 1.07 1.27 16 2 O -0.36 -2.98 10.57 -39.24 -0.41 -3.39 16 3 C 0.48 4.34 5.39 36.01 0.19 4.54 16 4 O -0.50 -5.64 14.17 -18.75 -0.27 -5.90 16 5 C -0.10 -0.73 3.37 -89.94 -0.30 -1.03 16 6 H 0.12 0.65 8.14 -51.93 -0.42 0.22 16 7 C -0.12 -0.74 6.44 -24.58 -0.16 -0.90 16 8 C 0.10 0.69 6.69 -2.53 -0.02 0.67 16 9 N -0.62 -6.92 3.08 -163.02 -0.50 -7.42 16 10 C 0.53 7.95 7.62 -10.99 -0.08 7.87 16 11 O -0.51 -10.06 14.87 5.55 0.08 -9.98 16 12 C -0.09 -1.18 4.83 -29.03 -0.14 -1.32 16 13 C -0.03 -0.63 4.37 -104.64 -0.46 -1.09 16 14 C -0.20 -3.59 9.70 -39.53 -0.38 -3.98 16 15 C -0.07 -1.47 10.04 -39.61 -0.40 -1.87 16 16 C -0.23 -5.27 9.17 -39.39 -0.36 -5.63 16 17 C 0.15 3.90 6.65 -39.11 -0.26 3.64 16 18 O -0.18 -5.32 9.76 0.06 0.00 -5.32 16 19 C -0.39 -11.22 9.49 30.89 0.29 -10.92 16 20 H 0.09 2.44 5.20 -52.48 -0.27 2.17 16 21 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 22 N -0.86 -25.92 13.67 55.48 0.76 -25.16 16 23 Si 0.94 21.09 29.55 -169.99 -5.02 16.07 16 24 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 25 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 26 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 27 C -0.17 -3.83 9.64 -39.40 -0.38 -4.21 16 28 C 0.15 1.62 3.42 -66.95 -0.23 1.39 16 29 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 30 C -0.17 -2.08 8.00 37.16 0.30 -1.79 16 31 H 0.06 0.34 8.13 -51.93 -0.42 -0.08 16 32 H 0.06 0.39 8.13 -51.93 -0.42 -0.03 16 33 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.09 0.72 7.30 -51.93 -0.38 0.34 16 36 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.09 0.48 7.47 -51.93 -0.39 0.10 16 38 H 0.10 1.14 8.08 -51.93 -0.42 0.72 16 39 H 0.10 1.03 7.79 -51.93 -0.40 0.62 16 40 H 0.10 1.60 8.06 -52.49 -0.42 1.18 16 41 H 0.11 1.77 8.06 -52.49 -0.42 1.34 16 42 H 0.13 2.86 5.64 -52.49 -0.30 2.57 16 43 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 44 H 0.11 2.43 8.06 -52.49 -0.42 2.01 16 45 H 0.08 1.21 6.61 -51.93 -0.34 0.86 16 46 H 0.06 0.63 7.32 -51.93 -0.38 0.25 16 47 H 0.07 0.86 7.03 -51.92 -0.37 0.50 16 LS Contribution 389.78 15.07 5.87 5.87 Total: -1.00 -36.61 389.78 -7.52 -44.12 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: -6.61 Total: 3.51 kcal Atomic # 6 Polarization: -10.98 SS G_CDS: -1.42 Total: -12.40 kcal Atomic # 7 Polarization: -32.84 SS G_CDS: 0.26 Total: -32.58 kcal Atomic # 8 Polarization: -23.99 SS G_CDS: -0.60 Total: -24.59 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -36.61 -7.52 -44.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787506217.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.294 kcal (2) G-P(sol) polarization free energy of solvation -36.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds