Wall clock time and date at job start Wed Apr 1 2020 05:30:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34225 * 116.99662 * 2 1 4 4 O 1.20827 * 120.00211 * 359.97438 * 3 2 1 5 5 C 1.50702 * 119.99952 * 179.97438 * 3 2 1 6 6 H 1.08997 * 110.64082 * 336.89148 * 5 3 2 7 7 C 1.55153 * 110.72106 * 213.74522 * 5 3 2 8 8 C 1.54915 * 101.58307 * 205.95741 * 7 5 3 9 9 N 1.47423 * 104.83226 * 37.01001 * 8 7 5 10 10 C 1.34771 * 125.64975 * 155.83190 * 9 8 7 11 11 O 1.21284 * 120.00377 * 180.02562 * 10 9 8 12 12 C 1.50700 * 119.99737 * 0.03004 * 10 9 8 13 13 C 1.50708 * 109.47198 * 179.97438 * 12 10 9 14 14 C 1.38329 * 119.96247 * 89.99688 * 13 12 10 15 15 C 1.38283 * 120.13338 * 179.97438 * 14 13 12 16 16 C 1.38117 * 120.07016 * 0.27932 * 15 14 13 17 17 C 1.38866 * 119.92872 * 359.44841 * 16 15 14 18 18 O 1.35756 * 120.06431 * 180.27695 * 17 16 15 19 19 C 1.34820 * 117.00323 * 354.41580 * 18 17 16 20 20 H 1.08004 * 120.00049 * 5.13170 * 19 18 17 21 21 C 1.38656 * 120.00278 * 185.13375 * 19 18 17 22 22 N 1.31555 * 119.99658 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00268 * 180.02562 * 21 19 18 24 24 H 1.48493 * 109.47270 * 359.97438 * 23 21 19 25 25 H 1.48492 * 109.46969 * 120.00388 * 23 21 19 26 26 H 1.48507 * 109.46974 * 239.99948 * 23 21 19 27 27 C 1.38078 * 119.96486 * 269.98081 * 13 12 10 28 28 C 1.47025 * 108.70142 * 336.10357 * 9 8 7 29 29 H 1.09002 * 109.87802 * 241.41171 * 28 9 8 30 30 C 1.53001 * 109.88503 * 120.25013 * 28 9 8 31 31 H 1.08990 * 109.47478 * 300.00464 * 1 2 3 32 32 H 1.09000 * 109.47045 * 60.00466 * 1 2 3 33 33 H 1.08999 * 109.46725 * 180.02562 * 1 2 3 34 34 H 1.09004 * 110.99879 * 87.88803 * 7 5 3 35 35 H 1.09002 * 111.03985 * 324.04947 * 7 5 3 36 36 H 1.09005 * 110.36706 * 278.17305 * 8 7 5 37 37 H 1.08997 * 110.45588 * 155.89846 * 8 7 5 38 38 H 1.09001 * 109.47462 * 59.99858 * 12 10 9 39 39 H 1.09003 * 109.47324 * 299.99422 * 12 10 9 40 40 H 1.07998 * 119.93110 * 0.02562 * 14 13 12 41 41 H 1.07994 * 119.95919 * 180.02562 * 15 14 13 42 42 H 1.08001 * 120.03679 * 179.70045 * 16 15 14 43 43 H 0.97003 * 119.99825 * 180.02562 * 22 21 19 44 44 H 1.08002 * 120.03537 * 0.03985 * 27 13 12 45 45 H 1.09002 * 109.47477 * 56.71519 * 30 28 9 46 46 H 1.08999 * 109.47130 * 176.72435 * 30 28 9 47 47 H 1.09008 * 109.46509 * 296.72065 * 30 28 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9990 0.3583 0.4013 7 6 4.0510 2.5089 0.8067 8 6 5.4246 2.7905 0.1482 9 7 5.2245 2.4974 -1.2826 10 6 5.9493 3.0077 -2.2978 11 8 5.6945 2.6954 -3.4418 12 6 7.0763 3.9663 -2.0116 13 6 7.7213 4.3848 -3.3078 14 6 7.2544 5.4975 -3.9841 15 6 7.8439 5.8850 -5.1734 16 6 8.8974 5.1583 -5.6927 17 6 9.3720 4.0440 -5.0133 18 8 10.4109 3.3310 -5.5183 19 6 10.8619 3.6866 -6.7380 20 1 10.4550 4.5568 -7.2317 21 6 11.8481 2.9352 -7.3588 22 7 12.3434 1.8750 -6.7577 23 14 12.4735 3.4284 -9.0485 24 1 11.7596 4.6482 -9.5040 25 1 13.9306 3.7051 -8.9756 26 1 12.2271 2.3233 -10.0095 27 6 8.7777 3.6573 -3.8189 28 6 4.0991 1.5612 -1.4191 29 1 4.4420 0.6339 -1.8782 30 6 2.9980 2.1922 -2.2737 31 1 -0.3634 0.5138 0.8898 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 4.1666 2.2647 1.8627 35 1 3.3740 3.3530 0.6748 36 1 6.1877 2.1342 0.5668 37 1 5.7062 3.8345 0.2859 38 1 7.8172 3.4776 -1.3788 39 1 6.6845 4.8454 -1.4999 40 1 6.4284 6.0653 -3.5819 41 1 7.4775 6.7545 -5.6988 42 1 9.3543 5.4586 -6.6241 43 1 13.0336 1.3495 -7.1919 44 1 9.1415 2.7884 -3.2906 45 1 3.4086 2.4785 -3.2419 46 1 2.1930 1.4717 -2.4190 47 1 2.6078 3.0760 -1.7687 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787506217.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:30:29 Heat of formation + Delta-G solvation = -139.073214 kcal Electronic energy + Delta-G solvation = -30036.480694 eV Core-core repulsion = 25763.477401 eV Total energy + Delta-G solvation = -4273.003293 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.15883 -41.12067 -40.52535 -38.87674 -38.01657 -37.36154 -34.35986 -33.92332 -32.86868 -32.25596 -30.86872 -29.24492 -28.36128 -27.26485 -27.16264 -24.55780 -23.58287 -23.25530 -22.55249 -21.02882 -20.25916 -19.41644 -18.79177 -18.67621 -18.20559 -17.64345 -17.42383 -16.87765 -16.74628 -16.51684 -16.20488 -16.08793 -15.60545 -15.39891 -15.05353 -14.76185 -14.61850 -14.35795 -14.29194 -14.06377 -13.93771 -13.63291 -13.55345 -13.39366 -13.17623 -12.98607 -12.95104 -12.82370 -12.64001 -12.49698 -12.34413 -12.22418 -12.10301 -12.07139 -11.83366 -11.78796 -11.44975 -11.20353 -10.90720 -10.78856 -9.73004 -9.63601 -8.97526 -8.47047 -6.15236 0.51056 0.75631 1.02422 1.33696 1.42503 1.52477 1.56294 1.65329 2.05042 2.17655 2.83477 3.13565 3.27022 3.34409 3.45195 3.69415 3.79283 3.97166 4.04422 4.10137 4.11301 4.20760 4.27411 4.29804 4.31461 4.32473 4.39525 4.42921 4.57169 4.60760 4.64864 4.70980 4.73892 4.77492 4.86587 4.90614 5.06350 5.10161 5.13448 5.19031 5.30550 5.35144 5.36170 5.65214 5.73010 5.75590 6.03215 6.22762 6.46148 6.66082 6.97701 7.18213 7.79344 8.76727 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.020760 B = 0.002003 C = 0.001951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.411049 B =13976.402028 C =14349.853780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.363 6.363 3 C 0.477 3.523 4 O -0.524 6.524 5 C -0.089 4.089 6 H 0.145 0.855 7 C -0.112 4.112 8 C 0.092 3.908 9 N -0.617 5.617 10 C 0.530 3.470 11 O -0.574 6.574 12 C -0.084 4.084 13 C -0.026 4.026 14 C -0.181 4.181 15 C -0.075 4.075 16 C -0.246 4.246 17 C 0.111 3.889 18 O -0.234 6.234 19 C -0.413 4.413 20 H 0.100 0.900 21 C -0.025 4.025 22 N -0.921 5.921 23 Si 1.020 2.980 24 H -0.253 1.253 25 H -0.265 1.265 26 H -0.269 1.269 27 C -0.190 4.190 28 C 0.148 3.852 29 H 0.078 0.922 30 C -0.164 4.164 31 H 0.067 0.933 32 H 0.057 0.943 33 H 0.129 0.871 34 H 0.126 0.874 35 H 0.080 0.920 36 H 0.101 0.899 37 H 0.108 0.892 38 H 0.125 0.875 39 H 0.142 0.858 40 H 0.145 0.855 41 H 0.144 0.856 42 H 0.117 0.883 43 H 0.272 0.728 44 H 0.108 0.892 45 H 0.050 0.950 46 H 0.059 0.941 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.240 0.551 20.663 29.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.280 6.280 3 C 0.321 3.679 4 O -0.413 6.413 5 C -0.109 4.109 6 H 0.163 0.837 7 C -0.149 4.149 8 C -0.029 4.029 9 N -0.352 5.352 10 C 0.320 3.680 11 O -0.452 6.452 12 C -0.123 4.123 13 C -0.026 4.026 14 C -0.199 4.199 15 C -0.092 4.092 16 C -0.265 4.265 17 C 0.061 3.939 18 O -0.141 6.141 19 C -0.489 4.489 20 H 0.117 0.883 21 C -0.222 4.222 22 N -0.560 5.560 23 Si 0.839 3.161 24 H -0.176 1.176 25 H -0.190 1.190 26 H -0.195 1.195 27 C -0.209 4.209 28 C 0.044 3.956 29 H 0.096 0.904 30 C -0.222 4.222 31 H 0.086 0.914 32 H 0.076 0.924 33 H 0.147 0.853 34 H 0.144 0.856 35 H 0.099 0.901 36 H 0.119 0.881 37 H 0.126 0.874 38 H 0.143 0.857 39 H 0.160 0.840 40 H 0.162 0.838 41 H 0.162 0.838 42 H 0.135 0.865 43 H 0.081 0.919 44 H 0.126 0.874 45 H 0.069 0.931 46 H 0.078 0.922 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -21.290 0.362 20.060 29.254 hybrid contribution 0.189 -0.176 -1.308 1.333 sum -21.101 0.186 18.752 28.230 Atomic orbital electron populations 1.23549 0.74774 1.05685 1.02565 1.86522 1.25000 1.32911 1.83521 1.23474 0.91893 0.81284 0.71286 1.90666 1.67604 1.37065 1.45984 1.22189 0.87256 1.04648 0.96783 0.83709 1.22911 0.95783 0.95380 1.00850 1.22775 0.98064 1.04368 0.77698 1.48583 1.32297 1.46229 1.08110 1.20664 0.82768 0.81034 0.83553 1.90753 1.70033 1.61468 1.22951 1.20680 0.95779 1.00319 0.95499 1.19183 0.93193 0.94188 0.96067 1.20958 1.02655 0.99291 0.96992 1.21117 0.93827 0.98639 0.95665 1.21289 1.03135 0.99002 1.03111 1.19879 0.88103 0.91767 0.94124 1.83931 1.42537 1.53925 1.33668 1.21851 1.21369 1.13161 0.92531 0.88316 1.26610 0.96267 0.95118 1.04236 1.70194 1.27986 1.17458 1.40335 0.84515 0.78417 0.78825 0.74331 1.17605 1.18976 1.19455 1.20212 1.00955 1.02834 0.96883 1.21271 0.86898 0.93195 0.94247 0.90361 1.22202 0.97778 1.01495 1.00716 0.91382 0.92405 0.85282 0.85563 0.90091 0.88096 0.87409 0.85736 0.84046 0.83768 0.83841 0.86520 0.91862 0.87374 0.93085 0.92186 0.91584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.56 113.37 1.20 1.47 16 2 O -0.36 -5.41 10.57 -51.37 -0.54 -5.96 16 3 C 0.48 7.83 5.39 71.24 0.38 8.21 16 4 O -0.52 -11.19 14.17 21.96 0.31 -10.88 16 5 C -0.09 -1.10 3.37 -10.35 -0.03 -1.13 16 6 H 0.15 1.04 8.14 -2.39 -0.02 1.02 16 7 C -0.11 -0.93 6.44 31.99 0.21 -0.72 16 8 C 0.09 0.85 6.69 86.86 0.58 1.43 16 9 N -0.62 -12.20 3.08 -788.05 -2.43 -14.62 16 10 C 0.53 14.87 7.62 87.66 0.67 15.54 16 11 O -0.57 -22.79 14.87 -3.04 -0.05 -22.84 16 12 C -0.08 -1.97 4.83 29.10 0.14 -1.83 16 13 C -0.03 -0.91 4.37 -19.88 -0.09 -1.00 16 14 C -0.18 -6.08 9.70 22.30 0.22 -5.87 16 15 C -0.07 -2.79 10.04 22.25 0.22 -2.56 16 16 C -0.25 -11.55 9.17 22.39 0.21 -11.35 16 17 C 0.11 5.92 6.65 22.58 0.15 6.07 16 18 O -0.23 -14.78 9.76 -22.70 -0.22 -15.00 16 19 C -0.41 -25.18 9.49 67.92 0.64 -24.54 16 20 H 0.10 5.58 5.20 -2.91 -0.02 5.56 16 21 C -0.03 -1.49 5.49 84.83 0.47 -1.02 16 22 N -0.92 -58.26 13.67 21.61 0.30 -57.97 16 23 Si 1.02 44.56 29.55 68.60 2.03 46.59 16 24 H -0.25 -10.26 7.11 99.48 0.71 -9.55 16 25 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 26 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 27 C -0.19 -8.61 9.64 22.39 0.22 -8.40 16 28 C 0.15 2.92 3.42 45.34 0.15 3.07 16 29 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 30 C -0.16 -3.92 8.00 71.98 0.58 -3.35 16 31 H 0.07 0.63 8.13 -2.39 -0.02 0.61 16 32 H 0.06 0.66 8.13 -2.39 -0.02 0.64 16 33 H 0.13 0.56 8.14 -2.39 -0.02 0.54 16 34 H 0.13 0.29 8.14 -2.38 -0.02 0.27 16 35 H 0.08 0.97 7.30 -2.39 -0.02 0.95 16 36 H 0.10 0.56 8.14 -2.38 -0.02 0.54 16 37 H 0.11 0.60 7.47 -2.39 -0.02 0.58 16 38 H 0.12 2.37 8.08 -2.39 -0.02 2.35 16 39 H 0.14 2.13 7.79 -2.39 -0.02 2.11 16 40 H 0.14 3.72 8.06 -2.91 -0.02 3.70 16 41 H 0.14 4.26 8.06 -2.91 -0.02 4.24 16 42 H 0.12 5.55 5.64 -2.91 -0.02 5.53 16 43 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 44 H 0.11 4.87 8.06 -2.91 -0.02 4.85 16 45 H 0.05 1.55 6.61 -2.39 -0.02 1.53 16 46 H 0.06 1.34 7.32 -2.39 -0.02 1.32 16 47 H 0.07 1.61 7.03 -2.38 -0.02 1.59 16 Total: -1.00 -88.82 389.78 6.29 -82.52 By element: Atomic # 1 Polarization: 23.13 SS G_CDS: 0.99 Total: 24.12 kcal Atomic # 6 Polarization: -31.88 SS G_CDS: 5.91 Total: -25.97 kcal Atomic # 7 Polarization: -70.46 SS G_CDS: -2.13 Total: -72.59 kcal Atomic # 8 Polarization: -54.18 SS G_CDS: -0.50 Total: -54.67 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -88.82 6.29 -82.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787506217.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.549 kcal (2) G-P(sol) polarization free energy of solvation -88.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds