Wall clock time and date at job start Wed Apr 1 2020 05:28:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 110.42084 * 2 1 4 4 C 1.54478 * 110.37126 * 237.68900 * 2 1 3 5 5 C 1.54510 * 104.06450 * 217.19404 * 4 2 1 6 6 H 1.09002 * 110.50678 * 241.36026 * 5 4 2 7 7 C 1.52992 * 110.51553 * 118.64382 * 5 4 2 8 8 C 1.54483 * 104.06223 * 359.97438 * 5 4 2 9 9 H 1.09001 * 110.46803 * 265.10334 * 8 5 4 10 10 C 1.50695 * 110.37185 * 142.80772 * 8 5 4 11 11 O 1.20823 * 120.00489 * 248.16874 * 10 8 5 12 12 O 1.34237 * 119.99341 * 68.17188 * 10 8 5 13 13 C 1.45205 * 116.99683 * 179.97438 * 12 10 8 14 14 C 1.50697 * 109.46902 * 179.97438 * 13 12 10 15 15 O 1.21275 * 120.00447 * 354.98797 * 14 13 12 16 16 N 1.34783 * 120.00096 * 174.98554 * 14 13 12 17 17 C 1.37144 * 119.99398 * 6.00227 * 16 14 13 18 18 H 1.08008 * 119.99958 * 53.63158 * 17 16 14 19 19 C 1.38882 * 120.00129 * 233.61961 * 17 16 14 20 20 N 1.31426 * 120.00131 * 5.47488 * 19 17 16 21 21 Si 1.86806 * 120.00362 * 185.47305 * 19 17 16 22 22 H 1.48501 * 109.46997 * 59.99916 * 21 19 17 23 23 H 1.48496 * 109.47215 * 180.02562 * 21 19 17 24 24 H 1.48506 * 109.46792 * 300.00507 * 21 19 17 25 25 C 1.39775 * 120.00331 * 186.00516 * 16 14 13 26 26 C 1.38965 * 120.08014 * 8.28548 * 25 16 14 27 27 C 1.38079 * 119.92432 * 179.74579 * 26 25 16 28 28 C 1.38312 * 120.07904 * 0.55396 * 27 26 25 29 29 C 1.38312 * 120.15027 * 359.69640 * 28 27 26 30 30 C 1.38076 * 120.08036 * 0.02680 * 29 28 27 31 31 O 1.44428 * 104.80223 * 23.98237 * 8 5 4 32 32 H 1.09002 * 109.47088 * 299.14910 * 1 2 3 33 33 H 1.08996 * 109.47170 * 59.13921 * 1 2 3 34 34 H 1.08995 * 109.47233 * 179.14768 * 1 2 3 35 35 H 1.08999 * 110.50923 * 335.83473 * 4 2 1 36 36 H 1.08998 * 110.51471 * 98.54539 * 4 2 1 37 37 H 1.09001 * 109.47017 * 305.35760 * 7 5 4 38 38 H 1.09000 * 109.46899 * 65.35561 * 7 5 4 39 39 H 1.08992 * 109.47509 * 185.35630 * 7 5 4 40 40 H 1.09006 * 109.47390 * 59.99719 * 13 12 10 41 41 H 1.09001 * 109.47142 * 299.99998 * 13 12 10 42 42 H 0.96997 * 119.99929 * 184.99101 * 20 19 17 43 43 H 1.08000 * 120.03217 * 359.97438 * 26 25 16 44 44 H 1.07997 * 119.96354 * 180.24981 * 27 26 25 45 45 H 1.07997 * 119.92549 * 179.71852 * 28 27 26 46 46 H 1.08008 * 119.95547 * 180.02562 * 29 28 27 47 47 H 1.08006 * 120.03725 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9103 1.0215 0.0000 4 6 2.0677 -0.7741 -1.2239 5 6 3.3177 -1.5058 -0.6859 6 1 4.2108 -1.1773 -1.2175 7 6 3.1461 -3.0211 -0.8083 8 6 3.3877 -1.0867 0.7994 9 1 4.0533 -0.2326 0.9235 10 6 3.8532 -2.2412 1.6488 11 8 3.0925 -2.7620 2.4297 12 8 5.1131 -2.6908 1.5377 13 6 5.4925 -3.8055 2.3875 14 6 6.9311 -4.1698 2.1254 15 8 7.5464 -3.6129 1.2412 16 7 7.5340 -5.1148 2.8739 17 6 6.8069 -5.8310 3.7900 18 1 5.9093 -6.3471 3.4826 19 6 7.2250 -5.8928 5.1130 20 7 8.2546 -5.1795 5.5109 21 14 6.3238 -6.9899 6.3271 22 1 6.3894 -8.3993 5.8639 23 1 6.9612 -6.8774 7.6635 24 1 4.9039 -6.5647 6.4189 25 6 8.9002 -5.3648 2.7164 26 6 9.6736 -4.5302 1.9187 27 6 11.0239 -4.7770 1.7696 28 6 11.6048 -5.8602 2.4039 29 6 10.8370 -6.6959 3.1945 30 6 9.4873 -6.4518 3.3527 31 8 2.0332 -0.7229 1.1443 32 1 -0.3633 0.5006 0.8975 33 1 -0.3633 0.5271 -0.8821 34 1 -0.3633 -1.0275 -0.0153 35 1 1.3275 -1.4919 -1.5771 36 1 2.3429 -0.0840 -2.0216 37 1 2.2241 -3.3237 -0.3118 38 1 3.0990 -3.2975 -1.8617 39 1 3.9927 -3.5218 -0.3389 40 1 4.8553 -4.6624 2.1687 41 1 5.3737 -3.5220 3.4332 42 1 8.5916 -5.2769 6.4152 43 1 9.2196 -3.6873 1.4188 44 1 11.6263 -4.1264 1.1530 45 1 12.6602 -6.0535 2.2819 46 1 11.2940 -7.5406 3.6888 47 1 8.8885 -7.1046 3.9706 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000800295035.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:28:51 Heat of formation + Delta-G solvation = -120.044905 kcal Electronic energy + Delta-G solvation = -31057.850770 eV Core-core repulsion = 26785.672606 eV Total energy + Delta-G solvation = -4272.178163 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.88415 -39.83310 -39.10201 -37.27043 -35.98083 -35.05990 -33.74290 -32.41953 -31.99097 -29.87319 -29.64872 -28.00458 -27.18559 -26.50570 -25.23894 -22.32157 -21.69214 -21.42571 -21.20739 -20.13512 -19.57154 -17.97803 -17.49822 -17.09073 -16.57803 -16.27123 -15.93712 -15.62504 -15.44374 -15.10591 -14.66002 -14.32345 -14.28803 -13.93576 -13.59813 -13.30445 -13.10113 -12.90993 -12.75522 -12.70656 -12.51606 -12.36070 -12.31273 -12.16887 -11.76692 -11.59067 -11.51928 -11.36930 -11.30755 -11.11387 -11.01466 -10.91259 -10.83080 -10.54568 -10.31407 -10.24761 -10.08927 -9.89289 -9.33704 -8.87663 -8.36810 -7.84571 -6.97484 -6.39956 -4.62625 2.31641 2.35201 2.42310 2.51479 3.03208 3.10622 3.11363 3.57740 3.74257 3.91860 4.17750 4.27992 4.50412 4.56955 4.68700 4.81108 4.84276 5.04298 5.08124 5.11029 5.18531 5.32942 5.37970 5.46662 5.54493 5.59229 5.68117 5.71277 5.77530 5.83471 5.87870 5.88957 5.93178 5.98726 6.11771 6.13534 6.52926 6.62644 6.64780 6.68249 6.81491 7.05585 7.17797 7.43841 7.55306 7.58598 7.68697 7.95671 7.99143 8.32964 8.75588 9.07929 9.46840 10.41051 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.014009 B = 0.002970 C = 0.002555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1998.296857 B = 9425.576254 C =10957.184858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.067 3.933 3 H 0.074 0.926 4 C -0.147 4.147 5 C -0.110 4.110 6 H 0.101 0.899 7 C -0.157 4.157 8 C 0.089 3.911 9 H 0.108 0.892 10 C 0.468 3.532 11 O -0.489 6.489 12 O -0.334 6.334 13 C 0.073 3.927 14 C 0.493 3.507 15 O -0.548 6.548 16 N -0.377 5.377 17 C -0.383 4.383 18 H 0.095 0.905 19 C 0.061 3.939 20 N -0.836 5.836 21 Si 0.917 3.083 22 H -0.267 1.267 23 H -0.279 1.279 24 H -0.266 1.266 25 C 0.195 3.805 26 C -0.181 4.181 27 C -0.117 4.117 28 C -0.173 4.173 29 C -0.119 4.119 30 C -0.105 4.105 31 O -0.343 6.343 32 H 0.064 0.936 33 H 0.071 0.929 34 H 0.065 0.935 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.061 0.939 38 H 0.066 0.934 39 H 0.068 0.932 40 H 0.094 0.906 41 H 0.105 0.895 42 H 0.277 0.723 43 H 0.165 0.835 44 H 0.106 0.894 45 H 0.101 0.899 46 H 0.105 0.895 47 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.546 6.437 -9.857 14.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.010 3.990 3 H 0.092 0.908 4 C -0.185 4.185 5 C -0.129 4.129 6 H 0.119 0.881 7 C -0.214 4.214 8 C 0.030 3.970 9 H 0.126 0.874 10 C 0.309 3.691 11 O -0.375 6.375 12 O -0.250 6.250 13 C -0.003 4.003 14 C 0.284 3.716 15 O -0.431 6.431 16 N -0.086 5.086 17 C -0.510 4.510 18 H 0.113 0.887 19 C -0.151 4.151 20 N -0.467 5.467 21 Si 0.741 3.259 22 H -0.192 1.192 23 H -0.204 1.204 24 H -0.191 1.191 25 C 0.098 3.902 26 C -0.201 4.201 27 C -0.136 4.136 28 C -0.192 4.192 29 C -0.138 4.138 30 C -0.126 4.126 31 O -0.262 6.262 32 H 0.083 0.917 33 H 0.090 0.910 34 H 0.084 0.916 35 H 0.101 0.899 36 H 0.101 0.899 37 H 0.080 0.920 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.112 0.888 41 H 0.123 0.877 42 H 0.088 0.912 43 H 0.182 0.818 44 H 0.124 0.876 45 H 0.119 0.881 46 H 0.123 0.877 47 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -8.582 6.599 -9.619 14.482 hybrid contribution -0.166 -0.680 1.033 1.248 sum -8.748 5.919 -8.586 13.612 Atomic orbital electron populations 1.21793 0.92746 1.03196 1.02541 1.23088 0.95715 0.95444 0.84778 0.90815 1.23154 0.97251 0.99805 0.98246 1.22446 0.99707 0.97627 0.93088 0.88116 1.22008 1.02964 0.93691 1.02776 1.22426 0.86835 0.94779 0.92975 0.87450 1.22919 0.80601 0.83939 0.81637 1.90691 1.55000 1.56501 1.35354 1.86453 1.29428 1.48380 1.60733 1.22609 0.95181 0.87458 0.95100 1.20175 0.87948 0.79974 0.83540 1.90332 1.64979 1.54007 1.33791 1.40824 1.05583 1.29586 1.32645 1.19362 1.10907 1.32951 0.87797 0.88716 1.25624 0.96035 0.95627 0.97793 1.69948 1.22508 1.34706 1.19554 0.86151 0.80087 0.80346 0.79288 1.19234 1.20445 1.19050 1.18125 0.84260 0.93383 0.94382 1.22364 0.93626 1.02018 1.02061 1.20838 0.94790 0.97640 1.00289 1.20776 0.98567 0.97990 1.01851 1.20734 0.93937 0.99472 0.99664 1.20753 0.94245 0.97403 1.00159 1.89254 1.24796 1.74376 1.37815 0.91656 0.90967 0.91590 0.89900 0.89931 0.91992 0.91487 0.91277 0.88769 0.87709 0.91218 0.81834 0.87611 0.88058 0.87668 0.85808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.52 37.16 0.35 -0.79 16 2 C 0.07 0.63 3.92 -25.96 -0.10 0.53 16 3 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 4 C -0.15 -1.21 6.28 -25.16 -0.16 -1.37 16 5 C -0.11 -1.18 3.63 -89.05 -0.32 -1.50 16 6 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 7 C -0.16 -1.88 8.10 37.15 0.30 -1.58 16 8 C 0.09 1.19 3.74 -27.11 -0.10 1.08 16 9 H 0.11 1.22 8.14 -51.93 -0.42 0.79 16 10 C 0.47 8.10 5.48 36.00 0.20 8.29 16 11 O -0.49 -9.83 16.30 -25.28 -0.41 -10.24 16 12 O -0.33 -6.29 8.87 -45.91 -0.41 -6.70 16 13 C 0.07 1.49 4.77 36.00 0.17 1.66 16 14 C 0.49 11.58 7.61 -10.98 -0.08 11.50 16 15 O -0.55 -13.44 13.03 -14.05 -0.18 -13.62 16 16 N -0.38 -9.31 2.66 -58.98 -0.16 -9.46 16 17 C -0.38 -9.25 7.40 -14.94 -0.11 -9.36 16 18 H 0.10 2.16 7.78 -52.48 -0.41 1.75 16 19 C 0.06 1.46 3.85 -17.49 -0.07 1.39 16 20 N -0.84 -21.43 11.62 55.49 0.64 -20.78 16 21 Si 0.92 18.59 29.56 -169.99 -5.02 13.57 16 22 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 23 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 24 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 25 C 0.19 4.81 5.71 -83.70 -0.48 4.33 16 26 C -0.18 -4.25 8.97 -39.37 -0.35 -4.61 16 27 C -0.12 -2.40 10.04 -39.61 -0.40 -2.79 16 28 C -0.17 -3.36 10.04 -39.53 -0.40 -3.76 16 29 C -0.12 -2.44 10.04 -39.61 -0.40 -2.84 16 30 C -0.10 -2.45 7.86 -39.37 -0.31 -2.76 16 31 O -0.34 -4.76 10.60 -54.47 -0.58 -5.34 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.07 0.56 8.12 -51.93 -0.42 0.14 16 35 H 0.08 0.65 7.45 -51.93 -0.39 0.27 16 36 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.07 0.98 6.35 -51.93 -0.33 0.65 16 40 H 0.09 1.80 8.07 -51.93 -0.42 1.38 16 41 H 0.10 2.21 8.04 -51.93 -0.42 1.79 16 42 H 0.28 6.76 8.32 -40.82 -0.34 6.42 16 43 H 0.17 4.00 4.75 -55.01 -0.26 3.73 16 44 H 0.11 1.86 8.06 -52.49 -0.42 1.43 16 45 H 0.10 1.65 8.06 -52.49 -0.42 1.23 16 46 H 0.11 1.85 8.06 -52.48 -0.42 1.43 16 47 H 0.12 2.95 6.02 -52.48 -0.32 2.64 16 LS Contribution 385.14 15.07 5.80 5.80 Total: -1.00 -30.09 385.14 -9.31 -39.41 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: -6.75 Total: 9.93 kcal Atomic # 6 Polarization: -0.30 SS G_CDS: -2.25 Total: -2.56 kcal Atomic # 7 Polarization: -30.74 SS G_CDS: 0.49 Total: -30.25 kcal Atomic # 8 Polarization: -34.32 SS G_CDS: -1.58 Total: -35.90 kcal Atomic # 14 Polarization: 18.59 SS G_CDS: -5.02 Total: 13.57 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -30.09 -9.31 -39.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000800295035.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.636 kcal (2) G-P(sol) polarization free energy of solvation -30.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds