Wall clock time and date at job start Wed Apr 1 2020 05:28:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 110.42084 * 2 1 4 4 C 1.54478 * 110.37126 * 237.68900 * 2 1 3 5 5 C 1.54510 * 104.06450 * 217.19404 * 4 2 1 6 6 H 1.09002 * 110.50678 * 241.36026 * 5 4 2 7 7 C 1.52992 * 110.51553 * 118.64382 * 5 4 2 8 8 C 1.54483 * 104.06223 * 359.97438 * 5 4 2 9 9 H 1.09001 * 110.46803 * 265.10334 * 8 5 4 10 10 C 1.50695 * 110.37185 * 142.80772 * 8 5 4 11 11 O 1.20823 * 120.00489 * 248.16874 * 10 8 5 12 12 O 1.34237 * 119.99341 * 68.17188 * 10 8 5 13 13 C 1.45205 * 116.99683 * 179.97438 * 12 10 8 14 14 C 1.50697 * 109.46902 * 179.97438 * 13 12 10 15 15 O 1.21275 * 120.00447 * 354.98797 * 14 13 12 16 16 N 1.34783 * 120.00096 * 174.98554 * 14 13 12 17 17 C 1.37144 * 119.99398 * 6.00227 * 16 14 13 18 18 H 1.08008 * 119.99958 * 53.63158 * 17 16 14 19 19 C 1.38882 * 120.00129 * 233.61961 * 17 16 14 20 20 N 1.31426 * 120.00131 * 5.47488 * 19 17 16 21 21 Si 1.86806 * 120.00362 * 185.47305 * 19 17 16 22 22 H 1.48501 * 109.46997 * 59.99916 * 21 19 17 23 23 H 1.48496 * 109.47215 * 180.02562 * 21 19 17 24 24 H 1.48506 * 109.46792 * 300.00507 * 21 19 17 25 25 C 1.39775 * 120.00331 * 186.00516 * 16 14 13 26 26 C 1.38965 * 120.08014 * 8.28548 * 25 16 14 27 27 C 1.38079 * 119.92432 * 179.74579 * 26 25 16 28 28 C 1.38312 * 120.07904 * 0.55396 * 27 26 25 29 29 C 1.38312 * 120.15027 * 359.69640 * 28 27 26 30 30 C 1.38076 * 120.08036 * 0.02680 * 29 28 27 31 31 O 1.44428 * 104.80223 * 23.98237 * 8 5 4 32 32 H 1.09002 * 109.47088 * 299.14910 * 1 2 3 33 33 H 1.08996 * 109.47170 * 59.13921 * 1 2 3 34 34 H 1.08995 * 109.47233 * 179.14768 * 1 2 3 35 35 H 1.08999 * 110.50923 * 335.83473 * 4 2 1 36 36 H 1.08998 * 110.51471 * 98.54539 * 4 2 1 37 37 H 1.09001 * 109.47017 * 305.35760 * 7 5 4 38 38 H 1.09000 * 109.46899 * 65.35561 * 7 5 4 39 39 H 1.08992 * 109.47509 * 185.35630 * 7 5 4 40 40 H 1.09006 * 109.47390 * 59.99719 * 13 12 10 41 41 H 1.09001 * 109.47142 * 299.99998 * 13 12 10 42 42 H 0.96997 * 119.99929 * 184.99101 * 20 19 17 43 43 H 1.08000 * 120.03217 * 359.97438 * 26 25 16 44 44 H 1.07997 * 119.96354 * 180.24981 * 27 26 25 45 45 H 1.07997 * 119.92549 * 179.71852 * 28 27 26 46 46 H 1.08008 * 119.95547 * 180.02562 * 29 28 27 47 47 H 1.08006 * 120.03725 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9103 1.0215 0.0000 4 6 2.0677 -0.7741 -1.2239 5 6 3.3177 -1.5058 -0.6859 6 1 4.2108 -1.1773 -1.2175 7 6 3.1461 -3.0211 -0.8083 8 6 3.3877 -1.0867 0.7994 9 1 4.0533 -0.2326 0.9235 10 6 3.8532 -2.2412 1.6488 11 8 3.0925 -2.7620 2.4297 12 8 5.1131 -2.6908 1.5377 13 6 5.4925 -3.8055 2.3875 14 6 6.9311 -4.1698 2.1254 15 8 7.5464 -3.6129 1.2412 16 7 7.5340 -5.1148 2.8739 17 6 6.8069 -5.8310 3.7900 18 1 5.9093 -6.3471 3.4826 19 6 7.2250 -5.8928 5.1130 20 7 8.2546 -5.1795 5.5109 21 14 6.3238 -6.9899 6.3271 22 1 6.3894 -8.3993 5.8639 23 1 6.9612 -6.8774 7.6635 24 1 4.9039 -6.5647 6.4189 25 6 8.9002 -5.3648 2.7164 26 6 9.6736 -4.5302 1.9187 27 6 11.0239 -4.7770 1.7696 28 6 11.6048 -5.8602 2.4039 29 6 10.8370 -6.6959 3.1945 30 6 9.4873 -6.4518 3.3527 31 8 2.0332 -0.7229 1.1443 32 1 -0.3633 0.5006 0.8975 33 1 -0.3633 0.5271 -0.8821 34 1 -0.3633 -1.0275 -0.0153 35 1 1.3275 -1.4919 -1.5771 36 1 2.3429 -0.0840 -2.0216 37 1 2.2241 -3.3237 -0.3118 38 1 3.0990 -3.2975 -1.8617 39 1 3.9927 -3.5218 -0.3389 40 1 4.8553 -4.6624 2.1687 41 1 5.3737 -3.5220 3.4332 42 1 8.5916 -5.2769 6.4152 43 1 9.2196 -3.6873 1.4188 44 1 11.6263 -4.1264 1.1530 45 1 12.6602 -6.0535 2.2819 46 1 11.2940 -7.5406 3.6888 47 1 8.8885 -7.1046 3.9706 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000800295035.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:28:50 Heat of formation + Delta-G solvation = -134.598580 kcal Electronic energy + Delta-G solvation = -31058.481864 eV Core-core repulsion = 26785.672606 eV Total energy + Delta-G solvation = -4272.809258 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.18658 -41.48102 -40.31306 -38.96157 -37.51842 -36.86900 -34.66177 -33.84983 -33.20862 -31.54267 -31.32599 -29.45938 -28.03119 -27.74484 -27.06732 -23.76432 -23.13439 -22.78482 -22.18672 -21.38063 -21.30414 -19.73157 -18.81348 -18.29412 -17.98007 -17.62616 -17.51387 -17.30304 -16.89836 -16.40061 -16.22345 -15.90598 -15.52570 -15.10000 -14.84641 -14.71489 -14.59457 -14.45970 -14.02757 -14.00481 -13.74203 -13.62282 -13.46561 -13.37996 -13.28532 -13.06125 -13.03134 -12.81722 -12.47330 -12.39242 -12.29502 -12.18360 -11.92536 -11.81118 -11.76062 -11.64858 -11.46681 -11.13360 -10.83379 -10.66203 -10.17579 -9.54214 -8.79104 -8.21286 -6.52353 0.62458 0.80573 0.96411 1.04626 1.40257 1.42541 1.51623 1.82715 2.19858 2.59108 2.87097 2.94154 3.32365 3.34417 3.47058 3.69066 3.78674 3.87120 4.03267 4.05528 4.16548 4.19406 4.32569 4.33524 4.35157 4.38854 4.52469 4.58647 4.65348 4.74927 4.86330 4.90418 4.96453 4.97399 5.00818 5.09015 5.12052 5.20327 5.22390 5.27620 5.28823 5.39636 5.73568 5.76025 5.82558 5.87053 5.97600 6.18738 6.51405 6.57547 6.89740 7.25277 7.63204 8.57909 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.014009 B = 0.002970 C = 0.002555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1998.296857 B = 9425.576254 C =10957.184858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.057 3.943 3 H 0.094 0.906 4 C -0.136 4.136 5 C -0.108 4.108 6 H 0.119 0.881 7 C -0.156 4.156 8 C 0.088 3.912 9 H 0.130 0.870 10 C 0.467 3.533 11 O -0.524 6.524 12 O -0.338 6.338 13 C 0.084 3.916 14 C 0.482 3.518 15 O -0.566 6.566 16 N -0.388 5.388 17 C -0.395 4.395 18 H 0.100 0.900 19 C 0.028 3.972 20 N -0.870 5.870 21 Si 0.979 3.021 22 H -0.258 1.258 23 H -0.279 1.279 24 H -0.265 1.265 25 C 0.162 3.838 26 C -0.206 4.206 27 C -0.116 4.116 28 C -0.162 4.162 29 C -0.118 4.118 30 C -0.123 4.123 31 O -0.376 6.376 32 H 0.058 0.942 33 H 0.101 0.899 34 H 0.053 0.947 35 H 0.086 0.914 36 H 0.115 0.885 37 H 0.046 0.954 38 H 0.090 0.910 39 H 0.039 0.961 40 H 0.102 0.898 41 H 0.093 0.907 42 H 0.277 0.723 43 H 0.149 0.851 44 H 0.137 0.863 45 H 0.144 0.856 46 H 0.136 0.864 47 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.086 6.809 -11.145 15.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.001 3.999 3 H 0.112 0.888 4 C -0.173 4.173 5 C -0.127 4.127 6 H 0.137 0.863 7 C -0.213 4.213 8 C 0.030 3.970 9 H 0.148 0.852 10 C 0.310 3.690 11 O -0.412 6.412 12 O -0.253 6.253 13 C 0.008 3.992 14 C 0.273 3.727 15 O -0.450 6.450 16 N -0.098 5.098 17 C -0.522 4.522 18 H 0.118 0.882 19 C -0.180 4.180 20 N -0.502 5.502 21 Si 0.801 3.199 22 H -0.182 1.182 23 H -0.203 1.203 24 H -0.190 1.190 25 C 0.066 3.934 26 C -0.226 4.226 27 C -0.134 4.134 28 C -0.181 4.181 29 C -0.137 4.137 30 C -0.144 4.144 31 O -0.296 6.296 32 H 0.077 0.923 33 H 0.120 0.880 34 H 0.072 0.928 35 H 0.105 0.895 36 H 0.133 0.867 37 H 0.065 0.935 38 H 0.109 0.891 39 H 0.058 0.942 40 H 0.120 0.880 41 H 0.111 0.889 42 H 0.087 0.913 43 H 0.166 0.834 44 H 0.155 0.845 45 H 0.162 0.838 46 H 0.154 0.846 47 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -8.124 6.972 -10.930 15.300 hybrid contribution -0.262 -0.773 1.376 1.600 sum -8.387 6.199 -9.553 14.143 Atomic orbital electron populations 1.21834 0.91851 1.02798 1.03652 1.23454 0.96525 0.96118 0.83824 0.88774 1.23153 0.95774 1.00027 0.98386 1.22544 1.01988 0.96779 0.91390 0.86306 1.21993 1.00823 0.94760 1.03755 1.22676 0.87309 0.93515 0.93533 0.85234 1.23924 0.79437 0.84323 0.81342 1.90661 1.55555 1.57917 1.37087 1.86475 1.30718 1.47823 1.60327 1.22315 0.93745 0.88443 0.94699 1.20592 0.88936 0.79804 0.83332 1.90306 1.65642 1.54591 1.34445 1.41036 1.06031 1.29885 1.32835 1.19658 1.11208 1.33025 0.88272 0.88202 1.26341 0.96330 0.96455 0.98915 1.70061 1.24052 1.36213 1.19842 0.85207 0.78700 0.79018 0.76975 1.18205 1.20347 1.18976 1.18487 0.84519 0.94629 0.95756 1.22385 0.95247 1.02022 1.02898 1.21219 0.93735 0.98333 1.00127 1.21231 1.00468 0.96504 0.99922 1.21141 0.92845 1.00397 0.99327 1.20801 0.95645 0.97301 1.00652 1.89237 1.24927 1.75159 1.40276 0.92301 0.88029 0.92802 0.89542 0.86697 0.93456 0.89126 0.94236 0.88022 0.88866 0.91305 0.83379 0.84503 0.83787 0.84578 0.87180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 9.52 71.98 0.69 -1.33 16 2 C 0.06 0.95 3.92 31.10 0.12 1.07 16 3 H 0.09 1.18 8.14 -2.38 -0.02 1.17 16 4 C -0.14 -1.84 6.28 31.61 0.20 -1.65 16 5 C -0.11 -2.15 3.63 -9.78 -0.04 -2.19 16 6 H 0.12 1.95 8.14 -2.39 -0.02 1.93 16 7 C -0.16 -3.70 8.10 71.98 0.58 -3.12 16 8 C 0.09 2.32 3.74 30.35 0.11 2.43 16 9 H 0.13 2.78 8.14 -2.39 -0.02 2.76 16 10 C 0.47 16.72 5.48 71.23 0.39 17.11 16 11 O -0.52 -22.06 16.30 28.22 0.46 -21.60 16 12 O -0.34 -13.28 8.87 -45.14 -0.40 -13.68 16 13 C 0.08 3.65 4.77 71.23 0.34 3.99 16 14 C 0.48 23.79 7.61 87.66 0.67 24.46 16 15 O -0.57 -29.00 13.03 15.73 0.21 -28.80 16 16 N -0.39 -19.98 2.66 -458.90 -1.22 -21.20 16 17 C -0.40 -19.73 7.40 84.02 0.62 -19.11 16 18 H 0.10 4.72 7.78 -2.91 -0.02 4.70 16 19 C 0.03 1.36 3.85 84.91 0.33 1.69 16 20 N -0.87 -45.64 11.62 21.65 0.25 -45.39 16 21 Si 0.98 38.57 29.56 68.60 2.03 40.60 16 22 H -0.26 -9.68 7.11 99.48 0.71 -8.97 16 23 H -0.28 -10.85 7.11 99.48 0.71 -10.14 16 24 H -0.27 -10.34 7.11 99.48 0.71 -9.64 16 25 C 0.16 8.22 5.71 38.22 0.22 8.43 16 26 C -0.21 -9.84 8.97 22.41 0.20 -9.63 16 27 C -0.12 -4.56 10.04 22.25 0.22 -4.33 16 28 C -0.16 -5.84 10.04 22.30 0.22 -5.61 16 29 C -0.12 -4.64 10.04 22.25 0.22 -4.42 16 30 C -0.12 -5.80 7.86 22.40 0.18 -5.62 16 31 O -0.38 -10.28 10.60 -130.58 -1.38 -11.66 16 32 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.05 0.87 8.12 -2.39 -0.02 0.85 16 35 H 0.09 1.13 7.45 -2.39 -0.02 1.12 16 36 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.04 1.16 6.35 -2.39 -0.02 1.15 16 40 H 0.10 4.15 8.07 -2.38 -0.02 4.13 16 41 H 0.09 4.20 8.04 -2.39 -0.02 4.18 16 42 H 0.28 13.78 8.32 -92.71 -0.77 13.01 16 43 H 0.15 7.51 4.75 -42.83 -0.20 7.31 16 44 H 0.14 4.44 8.06 -2.91 -0.02 4.41 16 45 H 0.14 3.96 8.06 -2.91 -0.02 3.94 16 46 H 0.14 4.40 8.06 -2.91 -0.02 4.37 16 47 H 0.11 5.37 6.02 -2.91 -0.02 5.36 16 Total: -1.00 -68.57 385.14 6.01 -62.56 By element: Atomic # 1 Polarization: 36.21 SS G_CDS: 0.79 Total: 37.00 kcal Atomic # 6 Polarization: -3.10 SS G_CDS: 5.28 Total: 2.17 kcal Atomic # 7 Polarization: -65.62 SS G_CDS: -0.97 Total: -66.59 kcal Atomic # 8 Polarization: -74.62 SS G_CDS: -1.12 Total: -75.74 kcal Atomic # 14 Polarization: 38.57 SS G_CDS: 2.03 Total: 40.60 kcal Total: -68.57 6.01 -62.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000800295035.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.035 kcal (2) G-P(sol) polarization free energy of solvation -68.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds