Wall clock time and date at job start Wed Apr 1 2020 05:28:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 110.27640 * 2 1 4 4 C 1.54949 * 110.30705 * 237.91205 * 2 1 3 5 5 C 1.55414 * 100.88910 * 204.71110 * 4 2 1 6 6 H 1.09001 * 110.76122 * 275.82329 * 5 4 2 7 7 C 1.53005 * 111.05568 * 152.32397 * 5 4 2 8 8 C 1.54381 * 102.31155 * 34.00807 * 5 4 2 9 9 H 1.09008 * 109.82914 * 98.22701 * 8 5 4 10 10 C 1.50702 * 109.90617 * 219.15786 * 8 5 4 11 11 O 1.20820 * 119.99914 * 114.63179 * 10 8 5 12 12 O 1.34233 * 119.99760 * 294.63043 * 10 8 5 13 13 C 1.45204 * 116.99906 * 179.97438 * 12 10 8 14 14 C 1.50699 * 109.47221 * 180.02562 * 13 12 10 15 15 O 1.21283 * 119.99584 * 354.99176 * 14 13 12 16 16 N 1.34772 * 119.99816 * 174.98813 * 14 13 12 17 17 C 1.37140 * 120.00228 * 6.00804 * 16 14 13 18 18 H 1.08004 * 120.00017 * 53.62398 * 17 16 14 19 19 C 1.38888 * 119.99875 * 233.62053 * 17 16 14 20 20 N 1.31414 * 120.00127 * 5.47042 * 19 17 16 21 21 Si 1.86805 * 119.99972 * 185.46364 * 19 17 16 22 22 H 1.48499 * 109.46861 * 90.00134 * 21 19 17 23 23 H 1.48490 * 109.47224 * 210.00047 * 21 19 17 24 24 H 1.48498 * 109.47057 * 330.00472 * 21 19 17 25 25 C 1.39787 * 119.99842 * 186.00542 * 16 14 13 26 26 C 1.38964 * 120.07940 * 8.28577 * 25 16 14 27 27 C 1.38084 * 119.91936 * 179.75080 * 26 25 16 28 28 C 1.38301 * 120.08157 * 0.54666 * 27 26 25 29 29 C 1.38311 * 120.15541 * 359.70721 * 28 27 26 30 30 C 1.38081 * 120.07709 * 0.02562 * 29 28 27 31 31 O 1.43235 * 107.58938 * 338.71526 * 8 5 4 32 32 H 1.09006 * 109.46940 * 300.69891 * 1 2 3 33 33 H 1.09006 * 109.47292 * 180.70436 * 1 2 3 34 34 H 1.08995 * 109.47422 * 60.70124 * 1 2 3 35 35 H 1.08999 * 111.12232 * 322.55165 * 4 2 1 36 36 H 1.08996 * 111.12599 * 86.72043 * 4 2 1 37 37 H 1.08999 * 109.46956 * 306.97395 * 7 5 4 38 38 H 1.08998 * 109.47017 * 66.97981 * 7 5 4 39 39 H 1.09005 * 109.47192 * 186.97625 * 7 5 4 40 40 H 1.09002 * 109.47022 * 300.00475 * 13 12 10 41 41 H 1.09006 * 109.46344 * 60.00239 * 13 12 10 42 42 H 0.97003 * 120.00115 * 184.99746 * 20 19 17 43 43 H 1.07996 * 120.03757 * 359.97438 * 26 25 16 44 44 H 1.08000 * 119.95423 * 180.25247 * 27 26 25 45 45 H 1.08001 * 119.92629 * 179.72564 * 28 27 26 46 46 H 1.07999 * 119.96384 * 180.02562 * 29 28 27 47 47 H 1.08006 * 120.03981 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9077 1.0224 0.0000 4 6 2.0677 -0.7720 -1.2312 5 6 3.4699 -1.2032 -0.7179 6 1 4.1974 -0.4049 -0.8647 7 6 3.9332 -2.4913 -1.4013 8 6 3.2112 -1.4412 0.7854 9 1 3.0624 -2.5050 0.9711 10 6 4.3808 -0.9402 1.5929 11 8 4.2383 -0.0081 2.3483 12 8 5.5809 -1.5295 1.4729 13 6 6.6620 -0.9939 2.2808 14 6 7.9228 -1.7753 2.0145 15 8 7.8915 -2.7490 1.2920 16 7 9.0850 -1.3921 2.5791 17 6 9.0994 -0.3683 3.4914 18 1 8.4485 -0.4031 4.3526 19 6 9.9510 0.7134 3.3079 20 7 10.6639 0.8093 2.2081 21 14 10.0828 2.0323 4.6243 22 1 11.1559 1.6680 5.5840 23 1 10.4077 3.3347 3.9894 24 1 8.7897 2.1422 5.3460 25 6 10.2757 -2.0383 2.2349 26 6 10.2941 -2.9546 1.1903 27 6 11.4734 -3.5872 0.8497 28 6 12.6328 -3.3182 1.5541 29 6 12.6171 -2.4107 2.5977 30 6 11.4427 -1.7703 2.9403 31 8 2.0286 -0.7157 1.1413 32 1 -0.3633 0.5247 0.8837 33 1 -0.3634 -1.0276 0.0126 34 1 -0.3634 0.5029 -0.8961 35 1 1.4470 -1.6403 -1.4522 36 1 2.1495 -0.1184 -2.0996 37 1 3.1641 -3.2562 -1.2944 38 1 4.1090 -2.2981 -2.4596 39 1 4.8567 -2.8371 -0.9369 40 1 6.8229 0.0532 2.0243 41 1 6.4007 -1.0736 3.3361 42 1 11.3117 1.5247 2.1108 43 1 9.3880 -3.1690 0.6433 44 1 11.4892 -4.2964 0.0354 45 1 13.5528 -3.8177 1.2884 46 1 13.5244 -2.2027 3.1454 47 1 11.4312 -1.0615 3.7551 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000800295039.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:28:56 Heat of formation + Delta-G solvation = -124.205697 kcal Electronic energy + Delta-G solvation = -30977.825742 eV Core-core repulsion = 26705.467153 eV Total energy + Delta-G solvation = -4272.358589 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.80893 -39.82927 -39.06937 -37.26414 -35.96552 -35.05962 -33.86333 -32.43877 -31.99487 -29.87339 -29.64946 -28.01975 -27.09791 -26.50106 -25.24157 -22.22183 -21.65462 -21.41166 -21.15431 -20.25647 -19.56716 -18.06842 -17.97069 -16.64040 -16.52512 -16.32960 -15.84838 -15.59793 -15.28559 -15.20414 -14.68562 -14.45149 -14.24544 -13.78273 -13.49043 -13.42268 -13.10687 -12.95944 -12.76045 -12.61713 -12.45558 -12.38520 -12.26909 -12.19756 -11.72763 -11.69076 -11.60101 -11.49412 -11.32422 -11.14021 -11.04447 -10.84273 -10.78574 -10.51414 -10.45483 -10.30747 -10.08523 -9.64243 -9.34157 -8.88619 -8.36393 -7.84715 -6.98125 -6.40260 -4.62936 2.34056 2.34740 2.51278 2.51874 3.00807 3.10263 3.12564 3.56626 3.62160 3.90236 4.10438 4.29445 4.41913 4.65610 4.68099 4.81505 4.92095 5.04978 5.07475 5.11739 5.23697 5.32446 5.34974 5.51201 5.55767 5.58317 5.72949 5.74881 5.75893 5.83284 5.88330 5.90909 5.96718 5.98702 6.11829 6.17162 6.62456 6.64302 6.68048 6.70419 6.81421 7.05535 7.17678 7.43713 7.55120 7.58478 7.68654 7.97636 7.99208 8.32947 8.75207 9.08122 9.46898 10.40349 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.013180 B = 0.003048 C = 0.002585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2123.912139 B = 9184.720136 C =10827.633011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.070 3.930 3 H 0.074 0.926 4 C -0.147 4.147 5 C -0.112 4.112 6 H 0.091 0.909 7 C -0.144 4.144 8 C 0.099 3.901 9 H 0.121 0.879 10 C 0.444 3.556 11 O -0.494 6.494 12 O -0.334 6.334 13 C 0.072 3.928 14 C 0.494 3.506 15 O -0.548 6.548 16 N -0.378 5.378 17 C -0.382 4.382 18 H 0.096 0.904 19 C 0.060 3.940 20 N -0.837 5.837 21 Si 0.917 3.083 22 H -0.271 1.271 23 H -0.279 1.279 24 H -0.263 1.263 25 C 0.195 3.805 26 C -0.181 4.181 27 C -0.117 4.117 28 C -0.173 4.173 29 C -0.119 4.119 30 C -0.105 4.105 31 O -0.347 6.347 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.071 0.929 35 H 0.085 0.915 36 H 0.088 0.912 37 H 0.060 0.940 38 H 0.064 0.936 39 H 0.077 0.923 40 H 0.103 0.897 41 H 0.094 0.906 42 H 0.276 0.724 43 H 0.165 0.835 44 H 0.106 0.894 45 H 0.101 0.899 46 H 0.105 0.895 47 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.016 -2.450 -5.826 13.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.013 3.987 3 H 0.092 0.908 4 C -0.184 4.184 5 C -0.131 4.131 6 H 0.109 0.891 7 C -0.202 4.202 8 C 0.039 3.961 9 H 0.139 0.861 10 C 0.285 3.715 11 O -0.380 6.380 12 O -0.250 6.250 13 C -0.004 4.004 14 C 0.284 3.716 15 O -0.431 6.431 16 N -0.087 5.087 17 C -0.509 4.509 18 H 0.113 0.887 19 C -0.151 4.151 20 N -0.468 5.468 21 Si 0.742 3.258 22 H -0.197 1.197 23 H -0.204 1.204 24 H -0.187 1.187 25 C 0.098 3.902 26 C -0.201 4.201 27 C -0.136 4.136 28 C -0.192 4.192 29 C -0.138 4.138 30 C -0.126 4.126 31 O -0.266 6.266 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.090 0.910 35 H 0.104 0.896 36 H 0.107 0.893 37 H 0.079 0.921 38 H 0.083 0.917 39 H 0.096 0.904 40 H 0.121 0.879 41 H 0.112 0.888 42 H 0.087 0.913 43 H 0.182 0.818 44 H 0.124 0.876 45 H 0.119 0.881 46 H 0.123 0.877 47 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -12.124 -2.418 -5.853 13.678 hybrid contribution 0.650 1.191 0.707 1.530 sum -11.474 -1.227 -5.146 12.634 Atomic orbital electron populations 1.21860 0.93140 1.02955 1.02593 1.23099 0.95175 0.95952 0.84509 0.90785 1.23472 0.95367 1.01124 0.98449 1.22654 0.98138 1.00803 0.91489 0.89064 1.21765 1.02669 0.95000 1.00729 1.22268 0.82841 0.97599 0.93365 0.86140 1.24036 0.84388 0.81398 0.81715 1.90674 1.84288 1.27172 1.35894 1.86453 1.18121 1.57869 1.62516 1.22597 0.83524 0.98930 0.95385 1.20183 0.85279 0.85335 0.80798 1.90329 1.85554 1.28253 1.38989 1.40836 1.02838 1.29265 1.35766 1.19420 1.29404 0.97058 1.05009 0.88664 1.25625 0.95932 0.97343 0.96203 1.69955 1.20932 1.32132 1.23732 0.86071 0.79535 0.79869 0.80372 1.19653 1.20420 1.18743 1.18131 0.87138 0.91321 0.93560 1.22363 1.00545 0.98749 0.98406 1.20836 0.92869 1.00365 0.99491 1.20773 0.97513 1.01734 0.99169 1.20733 0.97081 0.97816 0.98171 1.20756 0.91216 0.99884 1.00719 1.88535 1.38640 1.64804 1.34628 0.91678 0.91752 0.91023 0.89599 0.89347 0.92136 0.91721 0.90367 0.87877 0.88792 0.91304 0.81830 0.87612 0.88060 0.87676 0.85819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.62 37.16 0.36 -0.81 16 2 C 0.07 0.72 4.07 -25.70 -0.10 0.61 16 3 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 4 C -0.15 -1.22 6.05 -24.42 -0.15 -1.37 16 5 C -0.11 -1.21 3.10 -88.61 -0.27 -1.49 16 6 H 0.09 1.09 7.85 -51.93 -0.41 0.68 16 7 C -0.14 -1.41 9.16 37.16 0.34 -1.07 16 8 C 0.10 1.31 3.66 -27.16 -0.10 1.21 16 9 H 0.12 1.38 7.82 -51.92 -0.41 0.98 16 10 C 0.44 7.70 7.15 36.01 0.26 7.96 16 11 O -0.49 -9.98 16.27 -25.40 -0.41 -10.39 16 12 O -0.33 -6.31 9.76 -45.90 -0.45 -6.76 16 13 C 0.07 1.48 4.77 36.00 0.17 1.65 16 14 C 0.49 11.63 7.61 -10.99 -0.08 11.54 16 15 O -0.55 -13.43 13.03 -14.05 -0.18 -13.61 16 16 N -0.38 -9.34 2.66 -58.98 -0.16 -9.50 16 17 C -0.38 -9.25 7.40 -14.94 -0.11 -9.36 16 18 H 0.10 2.20 7.78 -52.48 -0.41 1.79 16 19 C 0.06 1.45 3.85 -17.49 -0.07 1.38 16 20 N -0.84 -21.38 11.62 55.49 0.64 -20.73 16 21 Si 0.92 18.61 29.56 -169.99 -5.02 13.59 16 22 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 23 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 24 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 25 C 0.19 4.81 5.71 -83.69 -0.48 4.34 16 26 C -0.18 -4.25 8.97 -39.37 -0.35 -4.60 16 27 C -0.12 -2.39 10.04 -39.61 -0.40 -2.79 16 28 C -0.17 -3.36 10.04 -39.53 -0.40 -3.76 16 29 C -0.12 -2.44 10.04 -39.61 -0.40 -2.84 16 30 C -0.11 -2.46 7.86 -39.37 -0.31 -2.76 16 31 O -0.35 -4.81 10.25 -54.93 -0.56 -5.37 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 35 H 0.09 0.60 7.94 -51.93 -0.41 0.19 16 36 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.06 0.49 8.11 -51.93 -0.42 0.07 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 40 H 0.10 2.17 8.04 -51.93 -0.42 1.76 16 41 H 0.09 1.84 8.07 -51.93 -0.42 1.42 16 42 H 0.28 6.70 8.32 -40.82 -0.34 6.36 16 43 H 0.17 3.98 4.75 -55.01 -0.26 3.72 16 44 H 0.11 1.85 8.06 -52.49 -0.42 1.43 16 45 H 0.10 1.65 8.06 -52.49 -0.42 1.23 16 46 H 0.11 1.86 8.06 -52.49 -0.42 1.44 16 47 H 0.12 2.96 6.02 -52.48 -0.32 2.65 16 LS Contribution 389.42 15.07 5.87 5.87 Total: -1.00 -30.01 389.42 -9.20 -39.21 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: -6.83 Total: 9.85 kcal Atomic # 6 Polarization: -0.05 SS G_CDS: -2.09 Total: -2.14 kcal Atomic # 7 Polarization: -30.72 SS G_CDS: 0.49 Total: -30.23 kcal Atomic # 8 Polarization: -34.53 SS G_CDS: -1.61 Total: -36.14 kcal Atomic # 14 Polarization: 18.61 SS G_CDS: -5.02 Total: 13.59 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -30.01 -9.20 -39.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000800295039.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.997 kcal (2) G-P(sol) polarization free energy of solvation -30.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds