Wall clock time and date at job start Wed Apr 1 2020 05:28:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 110.27640 * 2 1 4 4 C 1.54949 * 110.30705 * 237.91205 * 2 1 3 5 5 C 1.55414 * 100.88910 * 204.71110 * 4 2 1 6 6 H 1.09001 * 110.76122 * 275.82329 * 5 4 2 7 7 C 1.53005 * 111.05568 * 152.32397 * 5 4 2 8 8 C 1.54381 * 102.31155 * 34.00807 * 5 4 2 9 9 H 1.09008 * 109.82914 * 98.22701 * 8 5 4 10 10 C 1.50702 * 109.90617 * 219.15786 * 8 5 4 11 11 O 1.20820 * 119.99914 * 114.63179 * 10 8 5 12 12 O 1.34233 * 119.99760 * 294.63043 * 10 8 5 13 13 C 1.45204 * 116.99906 * 179.97438 * 12 10 8 14 14 C 1.50699 * 109.47221 * 180.02562 * 13 12 10 15 15 O 1.21283 * 119.99584 * 354.99176 * 14 13 12 16 16 N 1.34772 * 119.99816 * 174.98813 * 14 13 12 17 17 C 1.37140 * 120.00228 * 6.00804 * 16 14 13 18 18 H 1.08004 * 120.00017 * 53.62398 * 17 16 14 19 19 C 1.38888 * 119.99875 * 233.62053 * 17 16 14 20 20 N 1.31414 * 120.00127 * 5.47042 * 19 17 16 21 21 Si 1.86805 * 119.99972 * 185.46364 * 19 17 16 22 22 H 1.48499 * 109.46861 * 90.00134 * 21 19 17 23 23 H 1.48490 * 109.47224 * 210.00047 * 21 19 17 24 24 H 1.48498 * 109.47057 * 330.00472 * 21 19 17 25 25 C 1.39787 * 119.99842 * 186.00542 * 16 14 13 26 26 C 1.38964 * 120.07940 * 8.28577 * 25 16 14 27 27 C 1.38084 * 119.91936 * 179.75080 * 26 25 16 28 28 C 1.38301 * 120.08157 * 0.54666 * 27 26 25 29 29 C 1.38311 * 120.15541 * 359.70721 * 28 27 26 30 30 C 1.38081 * 120.07709 * 0.02562 * 29 28 27 31 31 O 1.43235 * 107.58938 * 338.71526 * 8 5 4 32 32 H 1.09006 * 109.46940 * 300.69891 * 1 2 3 33 33 H 1.09006 * 109.47292 * 180.70436 * 1 2 3 34 34 H 1.08995 * 109.47422 * 60.70124 * 1 2 3 35 35 H 1.08999 * 111.12232 * 322.55165 * 4 2 1 36 36 H 1.08996 * 111.12599 * 86.72043 * 4 2 1 37 37 H 1.08999 * 109.46956 * 306.97395 * 7 5 4 38 38 H 1.08998 * 109.47017 * 66.97981 * 7 5 4 39 39 H 1.09005 * 109.47192 * 186.97625 * 7 5 4 40 40 H 1.09002 * 109.47022 * 300.00475 * 13 12 10 41 41 H 1.09006 * 109.46344 * 60.00239 * 13 12 10 42 42 H 0.97003 * 120.00115 * 184.99746 * 20 19 17 43 43 H 1.07996 * 120.03757 * 359.97438 * 26 25 16 44 44 H 1.08000 * 119.95423 * 180.25247 * 27 26 25 45 45 H 1.08001 * 119.92629 * 179.72564 * 28 27 26 46 46 H 1.07999 * 119.96384 * 180.02562 * 29 28 27 47 47 H 1.08006 * 120.03981 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9077 1.0224 0.0000 4 6 2.0677 -0.7720 -1.2312 5 6 3.4699 -1.2032 -0.7179 6 1 4.1974 -0.4049 -0.8647 7 6 3.9332 -2.4913 -1.4013 8 6 3.2112 -1.4412 0.7854 9 1 3.0624 -2.5050 0.9711 10 6 4.3808 -0.9402 1.5929 11 8 4.2383 -0.0081 2.3483 12 8 5.5809 -1.5295 1.4729 13 6 6.6620 -0.9939 2.2808 14 6 7.9228 -1.7753 2.0145 15 8 7.8915 -2.7490 1.2920 16 7 9.0850 -1.3921 2.5791 17 6 9.0994 -0.3683 3.4914 18 1 8.4485 -0.4031 4.3526 19 6 9.9510 0.7134 3.3079 20 7 10.6639 0.8093 2.2081 21 14 10.0828 2.0323 4.6243 22 1 11.1559 1.6680 5.5840 23 1 10.4077 3.3347 3.9894 24 1 8.7897 2.1422 5.3460 25 6 10.2757 -2.0383 2.2349 26 6 10.2941 -2.9546 1.1903 27 6 11.4734 -3.5872 0.8497 28 6 12.6328 -3.3182 1.5541 29 6 12.6171 -2.4107 2.5977 30 6 11.4427 -1.7703 2.9403 31 8 2.0286 -0.7157 1.1413 32 1 -0.3633 0.5247 0.8837 33 1 -0.3634 -1.0276 0.0126 34 1 -0.3634 0.5029 -0.8961 35 1 1.4470 -1.6403 -1.4522 36 1 2.1495 -0.1184 -2.0996 37 1 3.1641 -3.2562 -1.2944 38 1 4.1090 -2.2981 -2.4596 39 1 4.8567 -2.8371 -0.9369 40 1 6.8229 0.0532 2.0243 41 1 6.4007 -1.0736 3.3361 42 1 11.3117 1.5247 2.1108 43 1 9.3880 -3.1690 0.6433 44 1 11.4892 -4.2964 0.0354 45 1 13.5528 -3.8177 1.2884 46 1 13.5244 -2.2027 3.1454 47 1 11.4312 -1.0615 3.7551 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000800295039.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:28:55 Heat of formation + Delta-G solvation = -138.493447 kcal Electronic energy + Delta-G solvation = -30978.445305 eV Core-core repulsion = 26705.467153 eV Total energy + Delta-G solvation = -4272.978152 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.13666 -41.48248 -40.32455 -38.96162 -37.51941 -36.87289 -34.76589 -33.85644 -33.26430 -31.54867 -31.33115 -29.47838 -27.89410 -27.71570 -27.07446 -23.74075 -23.08766 -22.69013 -22.27028 -21.41495 -21.32261 -19.73234 -19.33291 -18.00242 -17.94251 -17.84316 -17.34922 -17.29478 -16.86008 -16.50200 -16.08983 -15.89894 -15.49975 -15.29069 -14.85513 -14.64031 -14.48229 -14.38372 -14.10070 -14.02768 -13.84101 -13.49344 -13.41364 -13.32102 -13.13682 -13.06092 -12.94096 -12.84363 -12.65856 -12.47536 -12.38963 -12.15237 -11.93865 -11.85959 -11.75864 -11.64684 -11.51547 -11.14433 -10.74124 -10.67340 -10.17386 -9.54578 -8.79963 -8.21783 -6.52999 0.62196 0.80157 0.94999 1.10670 1.37884 1.42086 1.52491 1.82756 2.19226 2.57129 2.77765 2.86191 3.24460 3.33956 3.48438 3.64857 3.78679 3.86518 3.96307 4.07229 4.16939 4.19602 4.32196 4.32856 4.34719 4.43712 4.53440 4.58395 4.76124 4.80256 4.89991 4.93216 4.96183 5.00040 5.04156 5.08613 5.19709 5.20601 5.28382 5.29713 5.37564 5.39230 5.75508 5.77933 5.82203 5.86710 5.97181 6.18408 6.51234 6.57299 6.89057 7.24921 7.62798 8.57254 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.013180 B = 0.003048 C = 0.002585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2123.912139 B = 9184.720136 C =10827.633011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.056 3.944 3 H 0.062 0.938 4 C -0.130 4.130 5 C -0.112 4.112 6 H 0.072 0.928 7 C -0.139 4.139 8 C 0.101 3.899 9 H 0.142 0.858 10 C 0.441 3.559 11 O -0.528 6.528 12 O -0.337 6.337 13 C 0.083 3.917 14 C 0.482 3.518 15 O -0.565 6.565 16 N -0.389 5.389 17 C -0.395 4.395 18 H 0.099 0.901 19 C 0.028 3.972 20 N -0.869 5.869 21 Si 0.979 3.021 22 H -0.263 1.263 23 H -0.280 1.280 24 H -0.260 1.260 25 C 0.162 3.838 26 C -0.205 4.205 27 C -0.115 4.115 28 C -0.162 4.162 29 C -0.119 4.119 30 C -0.123 4.123 31 O -0.370 6.370 32 H 0.054 0.946 33 H 0.071 0.929 34 H 0.096 0.904 35 H 0.109 0.891 36 H 0.109 0.891 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.048 0.952 40 H 0.093 0.907 41 H 0.100 0.900 42 H 0.277 0.723 43 H 0.150 0.850 44 H 0.137 0.863 45 H 0.144 0.856 46 H 0.136 0.864 47 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.114 -3.124 -6.792 14.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.000 4.000 3 H 0.080 0.920 4 C -0.167 4.167 5 C -0.131 4.131 6 H 0.091 0.909 7 C -0.196 4.196 8 C 0.042 3.958 9 H 0.159 0.841 10 C 0.284 3.716 11 O -0.416 6.416 12 O -0.253 6.253 13 C 0.006 3.994 14 C 0.273 3.727 15 O -0.449 6.449 16 N -0.098 5.098 17 C -0.521 4.521 18 H 0.117 0.883 19 C -0.180 4.180 20 N -0.501 5.501 21 Si 0.801 3.199 22 H -0.187 1.187 23 H -0.205 1.205 24 H -0.183 1.183 25 C 0.066 3.934 26 C -0.225 4.225 27 C -0.134 4.134 28 C -0.181 4.181 29 C -0.137 4.137 30 C -0.144 4.144 31 O -0.289 6.289 32 H 0.073 0.927 33 H 0.090 0.910 34 H 0.115 0.885 35 H 0.127 0.873 36 H 0.127 0.873 37 H 0.101 0.899 38 H 0.098 0.902 39 H 0.068 0.932 40 H 0.111 0.889 41 H 0.118 0.882 42 H 0.087 0.913 43 H 0.166 0.834 44 H 0.155 0.845 45 H 0.162 0.838 46 H 0.154 0.846 47 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -12.228 -3.106 -6.822 14.343 hybrid contribution 0.709 1.354 0.972 1.811 sum -11.519 -1.753 -5.850 13.038 Atomic orbital electron populations 1.21859 0.91029 1.03679 1.03382 1.23395 0.96817 0.95351 0.84483 0.92035 1.23470 0.93314 1.01991 0.97971 1.22688 0.99556 1.00948 0.89909 0.90928 1.21734 1.01957 0.94843 1.01105 1.22533 0.81031 0.98194 0.94062 0.84061 1.25134 0.84483 0.80640 0.81325 1.90645 1.84597 1.28788 1.37605 1.86487 1.18491 1.58050 1.62267 1.22322 0.83329 0.97793 0.95940 1.20595 0.85946 0.85472 0.80658 1.90306 1.85969 1.28973 1.39696 1.41043 1.03314 1.29532 1.35936 1.19690 1.29777 0.97452 1.05172 0.88303 1.26334 0.95139 0.98729 0.97816 1.70063 1.21686 1.32908 1.25469 0.85132 0.79702 0.77034 0.78000 1.18736 1.20532 1.18342 1.18492 0.87632 0.92488 0.94782 1.22386 1.01516 0.99859 0.98753 1.21220 0.92106 0.99993 1.00075 1.21229 0.98649 1.00575 0.97660 1.21137 0.97073 0.97074 0.98430 1.20800 0.92095 1.00657 1.00871 1.88526 1.38320 1.65178 1.36881 0.92677 0.90967 0.88521 0.87301 0.87259 0.89902 0.90197 0.93234 0.88885 0.88168 0.91308 0.83353 0.84476 0.83776 0.84614 0.87229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 9.62 71.98 0.69 -1.25 16 2 C 0.06 1.09 4.07 31.26 0.13 1.21 16 3 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 4 C -0.13 -1.84 6.05 32.09 0.19 -1.65 16 5 C -0.11 -2.34 3.10 -9.49 -0.03 -2.37 16 6 H 0.07 1.77 7.85 -2.39 -0.02 1.75 16 7 C -0.14 -2.53 9.16 71.98 0.66 -1.87 16 8 C 0.10 2.68 3.66 30.32 0.11 2.79 16 9 H 0.14 3.13 7.82 -2.38 -0.02 3.11 16 10 C 0.44 15.92 7.15 71.24 0.51 16.43 16 11 O -0.53 -22.29 16.27 28.34 0.46 -21.83 16 12 O -0.34 -13.39 9.76 -45.11 -0.44 -13.83 16 13 C 0.08 3.60 4.77 71.24 0.34 3.94 16 14 C 0.48 23.89 7.61 87.66 0.67 24.56 16 15 O -0.57 -29.05 13.03 15.71 0.20 -28.84 16 16 N -0.39 -20.05 2.66 -458.89 -1.22 -21.27 16 17 C -0.39 -19.76 7.40 84.02 0.62 -19.14 16 18 H 0.10 4.72 7.78 -2.91 -0.02 4.70 16 19 C 0.03 1.37 3.85 84.91 0.33 1.70 16 20 N -0.87 -45.47 11.62 21.65 0.25 -45.22 16 21 Si 0.98 38.57 29.56 68.60 2.03 40.60 16 22 H -0.26 -9.92 7.11 99.48 0.71 -9.22 16 23 H -0.28 -11.01 7.11 99.48 0.71 -10.30 16 24 H -0.26 -9.97 7.11 99.48 0.71 -9.27 16 25 C 0.16 8.22 5.71 38.22 0.22 8.44 16 26 C -0.21 -9.81 8.97 22.41 0.20 -9.61 16 27 C -0.12 -4.54 10.04 22.25 0.22 -4.32 16 28 C -0.16 -5.83 10.04 22.30 0.22 -5.61 16 29 C -0.12 -4.65 10.04 22.25 0.22 -4.43 16 30 C -0.12 -5.82 7.86 22.41 0.18 -5.65 16 31 O -0.37 -10.13 10.25 -130.15 -1.33 -11.47 16 32 H 0.05 0.86 8.14 -2.38 -0.02 0.84 16 33 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 34 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.11 1.09 7.94 -2.39 -0.02 1.07 16 36 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.08 1.13 8.11 -2.39 -0.02 1.11 16 38 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.05 1.19 8.14 -2.38 -0.02 1.17 16 40 H 0.09 4.19 8.04 -2.39 -0.02 4.17 16 41 H 0.10 4.16 8.07 -2.38 -0.02 4.14 16 42 H 0.28 13.68 8.32 -92.71 -0.77 12.91 16 43 H 0.15 7.51 4.75 -42.78 -0.20 7.31 16 44 H 0.14 4.43 8.06 -2.91 -0.02 4.41 16 45 H 0.14 3.97 8.06 -2.91 -0.02 3.94 16 46 H 0.14 4.40 8.06 -2.91 -0.02 4.38 16 47 H 0.11 5.37 6.02 -2.91 -0.02 5.35 16 Total: -1.00 -68.03 389.42 6.22 -61.81 By element: Atomic # 1 Polarization: 36.09 SS G_CDS: 0.79 Total: 36.88 kcal Atomic # 6 Polarization: -2.31 SS G_CDS: 5.48 Total: 3.18 kcal Atomic # 7 Polarization: -65.53 SS G_CDS: -0.97 Total: -66.49 kcal Atomic # 8 Polarization: -74.86 SS G_CDS: -1.11 Total: -75.97 kcal Atomic # 14 Polarization: 38.57 SS G_CDS: 2.03 Total: 40.60 kcal Total: -68.03 6.22 -61.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000800295039.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.688 kcal (2) G-P(sol) polarization free energy of solvation -68.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds