Wall clock time and date at job start Wed Apr 1 2020 05:20:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.52624 * 2 1 4 4 C 1.53048 * 109.49445 * 239.91505 * 2 1 3 5 5 C 1.53043 * 109.53516 * 178.68492 * 4 2 1 6 6 C 1.52757 * 109.38199 * 61.24298 * 5 4 2 7 7 N 1.46929 * 109.00995 * 305.58503 * 6 5 4 8 8 C 1.34782 * 120.63066 * 233.58564 * 7 6 5 9 9 O 1.21346 * 119.99417 * 172.55570 * 8 7 6 10 10 C 1.49430 * 119.99699 * 352.55741 * 8 7 6 11 11 O 1.21252 * 120.00599 * 353.32423 * 10 8 7 12 12 O 1.34542 * 119.99630 * 173.04945 * 10 8 7 13 13 C 1.45204 * 117.00151 * 180.27843 * 12 10 8 14 14 C 1.50700 * 109.46970 * 180.02562 * 13 12 10 15 15 C 1.38307 * 119.92520 * 269.71824 * 14 13 12 16 16 C 1.38102 * 120.06368 * 179.72673 * 15 14 13 17 17 C 1.38875 * 119.93158 * 0.54793 * 16 15 14 18 18 O 1.35751 * 120.07144 * 179.74522 * 17 16 15 19 19 C 1.34827 * 117.00427 * 185.36834 * 18 17 16 20 20 H 1.08003 * 119.99446 * 5.23256 * 19 18 17 21 21 C 1.38651 * 120.00009 * 185.22690 * 19 18 17 22 22 N 1.31557 * 120.00108 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99874 * 179.97438 * 21 19 18 24 24 H 1.48508 * 109.47111 * 90.00342 * 23 21 19 25 25 H 1.48498 * 109.47310 * 210.00047 * 23 21 19 26 26 H 1.48500 * 109.47359 * 330.00432 * 23 21 19 27 27 C 1.38877 * 119.86478 * 359.73105 * 17 16 15 28 28 C 1.38105 * 119.92860 * 359.97438 * 27 17 16 29 29 C 1.46922 * 118.73519 * 53.30983 * 7 6 5 30 30 H 1.08996 * 109.46830 * 299.92217 * 1 2 3 31 31 H 1.09003 * 109.47098 * 59.92047 * 1 2 3 32 32 H 1.08999 * 109.47289 * 179.97438 * 1 2 3 33 33 H 1.08994 * 109.45948 * 298.70627 * 4 2 1 34 34 H 1.09004 * 109.45614 * 58.66807 * 4 2 1 35 35 H 1.08997 * 109.49534 * 181.32231 * 5 4 2 36 36 H 1.09000 * 109.49838 * 301.41763 * 5 4 2 37 37 H 1.09005 * 109.50553 * 185.70469 * 6 5 4 38 38 H 1.09003 * 109.43365 * 65.42464 * 6 5 4 39 39 H 1.09000 * 109.46605 * 299.99811 * 13 12 10 40 40 H 1.08989 * 109.47175 * 59.99603 * 13 12 10 41 41 H 1.07998 * 119.96994 * 0.02562 * 15 14 13 42 42 H 1.08000 * 120.03430 * 180.27463 * 16 15 14 43 43 H 0.97002 * 119.99611 * 179.97438 * 22 21 19 44 44 H 1.07999 * 120.04066 * 179.97438 * 27 17 16 45 45 H 1.08002 * 119.96241 * 180.02562 * 28 27 17 46 46 H 1.08998 * 109.58712 * 66.43428 * 29 7 6 47 47 H 1.08999 * 109.58571 * 186.71210 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0408 -0.7232 -1.2484 5 6 3.5708 -0.6952 -1.2660 6 6 4.1054 -1.4217 -0.0332 7 7 3.5046 -0.8292 1.1696 8 6 4.2812 -0.3857 2.1779 9 8 3.7851 0.2223 3.1034 10 6 5.7531 -0.6427 2.1559 11 8 6.2320 -1.3519 1.2969 12 8 6.5476 -0.0827 3.0861 13 6 7.9681 -0.3711 2.9998 14 6 8.6929 0.3362 4.1159 15 6 9.1814 1.6152 3.9198 16 6 9.8411 2.2681 4.9423 17 6 10.0237 1.6349 6.1647 18 8 10.6763 2.2721 7.1702 19 6 10.9170 1.5619 8.2907 20 1 10.6702 0.5111 8.3273 21 6 11.4813 2.1806 9.3957 22 7 11.7825 3.4604 9.3508 23 14 11.8141 1.1967 10.9484 24 1 13.1805 0.6186 10.8849 25 1 11.7083 2.0880 12.1314 26 1 10.8180 0.1013 11.0634 27 6 9.5371 0.3484 6.3566 28 6 8.8729 -0.2970 5.3321 29 6 2.0413 -0.7238 1.2495 30 1 -0.3633 0.5126 0.8907 31 1 -0.3633 0.5151 -0.8893 32 1 -0.3634 -1.0276 -0.0005 33 1 1.6966 -1.7573 -1.2353 34 1 1.6581 -0.2246 -2.1389 35 1 3.9334 -1.1898 -2.1671 36 1 3.9159 0.3387 -1.2541 37 1 5.1895 -1.3161 0.0099 38 1 3.8411 -2.4776 -0.0915 39 1 8.1266 -1.4459 3.0879 40 1 8.3516 -0.0248 2.0402 41 1 9.0427 2.1056 2.9676 42 1 10.2185 3.2685 4.7901 43 1 12.1769 3.8932 10.1241 44 1 9.6779 -0.1469 7.3060 45 1 8.4939 -1.2973 5.4809 46 1 1.6052 -1.7216 1.2980 47 1 1.7637 -0.1601 2.1402 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805560737.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:45 Heat of formation + Delta-G solvation = -109.520324 kcal Electronic energy + Delta-G solvation = -29361.320605 eV Core-core repulsion = 25089.598821 eV Total energy + Delta-G solvation = -4271.721783 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.38441 -39.81529 -39.06049 -38.05544 -37.22176 -36.25953 -34.09309 -32.45718 -32.32513 -30.68677 -30.25363 -27.88445 -26.82293 -26.05855 -25.08630 -23.70638 -22.73753 -22.07556 -21.03241 -20.66256 -20.01440 -18.10485 -17.95989 -17.63579 -17.06538 -16.91209 -16.47507 -15.78619 -15.24525 -15.15006 -14.78837 -14.61699 -14.58835 -14.38616 -14.00393 -13.74898 -13.64136 -13.52006 -13.30595 -13.08401 -12.98059 -12.78365 -12.61736 -12.34814 -12.23752 -11.80442 -11.74770 -11.54143 -11.41713 -11.29687 -11.05270 -11.00186 -10.87761 -10.83134 -10.72327 -10.57693 -10.47549 -9.72735 -9.44989 -9.14478 -8.91245 -8.27621 -7.35179 -6.53338 -4.11627 0.93110 1.52467 2.15128 2.24119 2.76052 3.08442 3.10375 3.15370 3.22733 3.90762 4.13002 4.25394 4.32917 4.40850 4.58067 4.59394 4.84332 4.92758 5.02443 5.03803 5.08333 5.10040 5.13143 5.18600 5.24012 5.28987 5.34693 5.40110 5.50009 5.53966 5.62436 5.64211 5.67620 5.71070 5.74817 5.91038 5.95918 6.12509 6.31498 6.31823 6.57939 6.69365 6.79477 6.95719 7.12508 7.17940 7.24813 7.34405 7.62141 7.70673 7.91373 8.91824 9.59406 10.63996 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.024347 B = 0.001739 C = 0.001702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.763298 B =16097.632565 C =16448.660553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.108 4.108 3 H 0.077 0.923 4 C -0.117 4.117 5 C -0.136 4.136 6 C 0.064 3.936 7 N -0.583 5.583 8 C 0.530 3.470 9 O -0.488 6.488 10 C 0.459 3.541 11 O -0.485 6.485 12 O -0.317 6.317 13 C 0.126 3.874 14 C -0.209 4.209 15 C -0.046 4.046 16 C -0.196 4.196 17 C 0.165 3.835 18 O -0.170 6.170 19 C -0.393 4.393 20 H 0.094 0.906 21 C 0.040 3.960 22 N -0.857 5.857 23 Si 0.943 3.057 24 H -0.272 1.272 25 H -0.277 1.277 26 H -0.266 1.266 27 C -0.238 4.238 28 C -0.042 4.042 29 C 0.114 3.886 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.057 0.943 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.079 0.921 36 H 0.066 0.934 37 H 0.139 0.861 38 H 0.071 0.929 39 H 0.076 0.924 40 H 0.076 0.924 41 H 0.114 0.886 42 H 0.121 0.879 43 H 0.272 0.728 44 H 0.131 0.869 45 H 0.109 0.891 46 H 0.075 0.925 47 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.960 -10.249 -20.685 29.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.127 4.127 3 H 0.095 0.905 4 C -0.155 4.155 5 C -0.174 4.174 6 C -0.057 4.057 7 N -0.319 5.319 8 C 0.312 3.688 9 O -0.361 6.361 10 C 0.299 3.701 11 O -0.376 6.376 12 O -0.231 6.231 13 C 0.054 3.946 14 C -0.210 4.210 15 C -0.064 4.064 16 C -0.215 4.215 17 C 0.109 3.891 18 O -0.072 6.072 19 C -0.469 4.469 20 H 0.112 0.888 21 C -0.165 4.165 22 N -0.491 5.491 23 Si 0.767 3.233 24 H -0.198 1.198 25 H -0.202 1.202 26 H -0.191 1.191 27 C -0.257 4.257 28 C -0.060 4.060 29 C -0.007 4.007 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.098 0.902 36 H 0.085 0.915 37 H 0.156 0.844 38 H 0.090 0.910 39 H 0.094 0.906 40 H 0.094 0.906 41 H 0.132 0.868 42 H 0.139 0.861 43 H 0.082 0.918 44 H 0.148 0.852 45 H 0.128 0.872 46 H 0.093 0.907 47 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -17.807 -9.693 -20.174 28.601 hybrid contribution 0.180 -0.647 0.649 0.934 sum -17.626 -10.340 -19.525 28.264 Atomic orbital electron populations 1.21764 0.94013 1.02177 1.02345 1.21518 0.96219 1.00320 0.94623 0.90469 1.21635 0.95441 1.00857 0.97529 1.21881 0.95917 1.01610 0.98033 1.22841 1.03353 0.96994 0.82522 1.47879 1.06786 1.59625 1.17562 1.18982 0.85388 0.80823 0.83630 1.90831 1.73782 1.37163 1.34347 1.23436 0.89340 0.77675 0.79660 1.90513 1.76397 1.35669 1.34975 1.86845 1.21825 1.65342 1.49051 1.21940 0.74268 0.99912 0.98470 1.18787 1.08928 0.97421 0.95870 1.20503 0.95434 0.92939 0.97556 1.20183 1.08112 1.01328 0.91910 1.19459 0.89451 0.90965 0.89184 1.83989 1.62617 1.38735 1.21884 1.21377 1.42293 0.93940 0.89295 0.88845 1.25337 0.96315 0.96140 0.98685 1.70039 1.38582 1.09592 1.30925 0.85680 0.79149 0.78871 0.79567 1.19774 1.20158 1.19086 1.21148 1.07137 0.96781 1.00627 1.20623 0.95367 0.98281 0.91735 1.21858 0.77684 1.01460 0.99732 0.92170 0.92119 0.92378 0.91605 0.91495 0.90242 0.91508 0.84378 0.91035 0.90606 0.90570 0.86827 0.86125 0.91826 0.85182 0.87245 0.90700 0.88476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.70 9.20 37.16 0.34 -0.36 16 2 C -0.11 -0.67 2.87 -90.50 -0.26 -0.93 16 3 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 4 C -0.12 -0.63 5.17 -26.68 -0.14 -0.76 16 5 C -0.14 -0.84 6.06 -26.83 -0.16 -1.00 16 6 C 0.06 0.51 5.99 -3.93 -0.02 0.49 16 7 N -0.58 -5.76 2.98 -173.55 -0.52 -6.28 16 8 C 0.53 6.97 7.74 -11.59 -0.09 6.88 16 9 O -0.49 -7.92 16.39 -7.51 -0.12 -8.04 16 10 C 0.46 6.24 7.89 35.40 0.28 6.52 16 11 O -0.49 -6.24 12.93 -19.07 -0.25 -6.49 16 12 O -0.32 -4.96 10.08 -45.05 -0.45 -5.41 16 13 C 0.13 1.81 5.59 36.01 0.20 2.01 16 14 C -0.21 -3.63 5.52 -104.58 -0.58 -4.21 16 15 C -0.05 -0.82 9.69 -39.61 -0.38 -1.20 16 16 C -0.20 -4.09 9.99 -39.40 -0.39 -4.49 16 17 C 0.16 3.93 6.65 -39.11 -0.26 3.67 16 18 O -0.17 -4.79 9.76 0.05 0.00 -4.78 16 19 C -0.39 -10.81 9.45 30.88 0.29 -10.52 16 20 H 0.09 2.37 5.28 -52.48 -0.28 2.09 16 21 C 0.04 1.09 5.49 -17.52 -0.10 1.00 16 22 N -0.86 -24.78 13.67 55.48 0.76 -24.02 16 23 Si 0.94 20.21 29.55 -169.99 -5.02 15.19 16 24 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 25 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 26 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 27 C -0.24 -5.12 9.14 -39.39 -0.36 -5.48 16 28 C -0.04 -0.77 9.69 -39.61 -0.38 -1.15 16 29 C 0.11 0.91 5.73 -3.71 -0.02 0.88 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.14 1.31 4.24 -55.19 -0.23 1.07 16 38 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.08 0.98 8.08 -51.93 -0.42 0.56 16 40 H 0.08 0.96 8.08 -51.94 -0.42 0.54 16 41 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 42 H 0.12 2.40 8.06 -52.49 -0.42 1.98 16 43 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 44 H 0.13 2.79 5.70 -52.49 -0.30 2.49 16 45 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 46 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 47 H 0.10 0.90 7.00 -51.93 -0.36 0.54 16 LS Contribution 390.83 15.07 5.89 5.89 Total: -1.00 -31.71 390.83 -8.40 -40.10 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: -6.64 Total: 2.51 kcal Atomic # 6 Polarization: -6.63 SS G_CDS: -2.04 Total: -8.66 kcal Atomic # 7 Polarization: -30.54 SS G_CDS: 0.24 Total: -30.30 kcal Atomic # 8 Polarization: -23.90 SS G_CDS: -0.82 Total: -24.73 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -31.71 -8.40 -40.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805560737.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.417 kcal (2) G-P(sol) polarization free energy of solvation -31.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds