Wall clock time and date at job start Wed Apr 1 2020 05:20:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.52624 * 2 1 4 4 C 1.53048 * 109.49445 * 239.91505 * 2 1 3 5 5 C 1.53043 * 109.53516 * 178.68492 * 4 2 1 6 6 C 1.52757 * 109.38199 * 61.24298 * 5 4 2 7 7 N 1.46929 * 109.00995 * 305.58503 * 6 5 4 8 8 C 1.34782 * 120.63066 * 233.58564 * 7 6 5 9 9 O 1.21346 * 119.99417 * 172.55570 * 8 7 6 10 10 C 1.49430 * 119.99699 * 352.55741 * 8 7 6 11 11 O 1.21252 * 120.00599 * 353.32423 * 10 8 7 12 12 O 1.34542 * 119.99630 * 173.04945 * 10 8 7 13 13 C 1.45204 * 117.00151 * 180.27843 * 12 10 8 14 14 C 1.50700 * 109.46970 * 180.02562 * 13 12 10 15 15 C 1.38307 * 119.92520 * 269.71824 * 14 13 12 16 16 C 1.38102 * 120.06368 * 179.72673 * 15 14 13 17 17 C 1.38875 * 119.93158 * 0.54793 * 16 15 14 18 18 O 1.35751 * 120.07144 * 179.74522 * 17 16 15 19 19 C 1.34827 * 117.00427 * 185.36834 * 18 17 16 20 20 H 1.08003 * 119.99446 * 5.23256 * 19 18 17 21 21 C 1.38651 * 120.00009 * 185.22690 * 19 18 17 22 22 N 1.31557 * 120.00108 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99874 * 179.97438 * 21 19 18 24 24 H 1.48508 * 109.47111 * 90.00342 * 23 21 19 25 25 H 1.48498 * 109.47310 * 210.00047 * 23 21 19 26 26 H 1.48500 * 109.47359 * 330.00432 * 23 21 19 27 27 C 1.38877 * 119.86478 * 359.73105 * 17 16 15 28 28 C 1.38105 * 119.92860 * 359.97438 * 27 17 16 29 29 C 1.46922 * 118.73519 * 53.30983 * 7 6 5 30 30 H 1.08996 * 109.46830 * 299.92217 * 1 2 3 31 31 H 1.09003 * 109.47098 * 59.92047 * 1 2 3 32 32 H 1.08999 * 109.47289 * 179.97438 * 1 2 3 33 33 H 1.08994 * 109.45948 * 298.70627 * 4 2 1 34 34 H 1.09004 * 109.45614 * 58.66807 * 4 2 1 35 35 H 1.08997 * 109.49534 * 181.32231 * 5 4 2 36 36 H 1.09000 * 109.49838 * 301.41763 * 5 4 2 37 37 H 1.09005 * 109.50553 * 185.70469 * 6 5 4 38 38 H 1.09003 * 109.43365 * 65.42464 * 6 5 4 39 39 H 1.09000 * 109.46605 * 299.99811 * 13 12 10 40 40 H 1.08989 * 109.47175 * 59.99603 * 13 12 10 41 41 H 1.07998 * 119.96994 * 0.02562 * 15 14 13 42 42 H 1.08000 * 120.03430 * 180.27463 * 16 15 14 43 43 H 0.97002 * 119.99611 * 179.97438 * 22 21 19 44 44 H 1.07999 * 120.04066 * 179.97438 * 27 17 16 45 45 H 1.08002 * 119.96241 * 180.02562 * 28 27 17 46 46 H 1.08998 * 109.58712 * 66.43428 * 29 7 6 47 47 H 1.08999 * 109.58571 * 186.71210 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0408 -0.7232 -1.2484 5 6 3.5708 -0.6952 -1.2660 6 6 4.1054 -1.4217 -0.0332 7 7 3.5046 -0.8292 1.1696 8 6 4.2812 -0.3857 2.1779 9 8 3.7851 0.2223 3.1034 10 6 5.7531 -0.6427 2.1559 11 8 6.2320 -1.3519 1.2969 12 8 6.5476 -0.0827 3.0861 13 6 7.9681 -0.3711 2.9998 14 6 8.6929 0.3362 4.1159 15 6 9.1814 1.6152 3.9198 16 6 9.8411 2.2681 4.9423 17 6 10.0237 1.6349 6.1647 18 8 10.6763 2.2721 7.1702 19 6 10.9170 1.5619 8.2907 20 1 10.6702 0.5111 8.3273 21 6 11.4813 2.1806 9.3957 22 7 11.7825 3.4604 9.3508 23 14 11.8141 1.1967 10.9484 24 1 13.1805 0.6186 10.8849 25 1 11.7083 2.0880 12.1314 26 1 10.8180 0.1013 11.0634 27 6 9.5371 0.3484 6.3566 28 6 8.8729 -0.2970 5.3321 29 6 2.0413 -0.7238 1.2495 30 1 -0.3633 0.5126 0.8907 31 1 -0.3633 0.5151 -0.8893 32 1 -0.3634 -1.0276 -0.0005 33 1 1.6966 -1.7573 -1.2353 34 1 1.6581 -0.2246 -2.1389 35 1 3.9334 -1.1898 -2.1671 36 1 3.9159 0.3387 -1.2541 37 1 5.1895 -1.3161 0.0099 38 1 3.8411 -2.4776 -0.0915 39 1 8.1266 -1.4459 3.0879 40 1 8.3516 -0.0248 2.0402 41 1 9.0427 2.1056 2.9676 42 1 10.2185 3.2685 4.7901 43 1 12.1769 3.8932 10.1241 44 1 9.6779 -0.1469 7.3060 45 1 8.4939 -1.2973 5.4809 46 1 1.6052 -1.7216 1.2980 47 1 1.7637 -0.1601 2.1402 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805560737.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:44 Heat of formation + Delta-G solvation = -127.151988 kcal Electronic energy + Delta-G solvation = -29362.085171 eV Core-core repulsion = 25089.598821 eV Total energy + Delta-G solvation = -4272.486350 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.38005 -40.97287 -40.55827 -38.91584 -38.63683 -37.61847 -34.79873 -34.38655 -32.90087 -32.21234 -31.85310 -28.75240 -27.84872 -27.32135 -26.53991 -24.71361 -23.71447 -23.29575 -22.24152 -21.84767 -20.70933 -19.92557 -19.04827 -18.92115 -18.46857 -17.97690 -17.51397 -16.66000 -16.53803 -16.27090 -16.17385 -15.86922 -15.60028 -15.45064 -15.30504 -15.16520 -14.66710 -14.62697 -14.35880 -14.21816 -14.15678 -13.89180 -13.64658 -13.52592 -13.15733 -13.06886 -12.83771 -12.62711 -12.53325 -12.44621 -12.25023 -12.13148 -12.04067 -11.92760 -11.78752 -11.68932 -11.34071 -11.25496 -10.84394 -10.61497 -9.92227 -9.86067 -9.08891 -8.50653 -6.19059 -0.10632 0.26364 0.53801 0.95429 1.34948 1.44118 1.52506 1.74002 2.15826 2.28482 2.77065 3.06347 3.29269 3.43101 3.70781 3.78207 3.81983 3.89006 3.89507 4.04960 4.11666 4.23278 4.27496 4.30165 4.37860 4.51584 4.56262 4.63512 4.71942 4.72644 4.77929 4.85212 4.87961 4.96666 5.04381 5.09415 5.13386 5.17201 5.20185 5.27416 5.33478 5.37151 5.47262 5.49164 5.63924 5.65005 5.84914 5.98166 6.09731 6.19387 6.63711 6.93697 7.71255 8.72026 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.024347 B = 0.001739 C = 0.001702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.763298 B =16097.632565 C =16448.660553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.104 4.104 3 H 0.061 0.939 4 C -0.114 4.114 5 C -0.133 4.133 6 C 0.060 3.940 7 N -0.570 5.570 8 C 0.525 3.475 9 O -0.531 6.531 10 C 0.463 3.537 11 O -0.476 6.476 12 O -0.338 6.338 13 C 0.126 3.874 14 C -0.187 4.187 15 C -0.040 4.040 16 C -0.207 4.207 17 C 0.126 3.874 18 O -0.225 6.225 19 C -0.416 4.416 20 H 0.104 0.896 21 C -0.021 4.021 22 N -0.917 5.917 23 Si 1.020 2.980 24 H -0.261 1.261 25 H -0.271 1.271 26 H -0.253 1.253 27 C -0.247 4.247 28 C -0.042 4.042 29 C 0.108 3.892 30 H 0.054 0.946 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.099 0.901 36 H 0.055 0.945 37 H 0.127 0.873 38 H 0.089 0.911 39 H 0.096 0.904 40 H 0.101 0.899 41 H 0.153 0.847 42 H 0.120 0.880 43 H 0.274 0.726 44 H 0.124 0.876 45 H 0.143 0.857 46 H 0.096 0.904 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.947 -13.189 -23.621 33.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.123 4.123 3 H 0.079 0.921 4 C -0.151 4.151 5 C -0.171 4.171 6 C -0.060 4.060 7 N -0.304 5.304 8 C 0.308 3.692 9 O -0.408 6.408 10 C 0.303 3.697 11 O -0.365 6.365 12 O -0.253 6.253 13 C 0.054 3.946 14 C -0.188 4.188 15 C -0.057 4.057 16 C -0.227 4.227 17 C 0.075 3.925 18 O -0.131 6.131 19 C -0.492 4.492 20 H 0.121 0.879 21 C -0.219 4.219 22 N -0.554 5.554 23 Si 0.839 3.161 24 H -0.186 1.186 25 H -0.196 1.196 26 H -0.177 1.177 27 C -0.266 4.266 28 C -0.060 4.060 29 C -0.012 4.012 30 H 0.073 0.927 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.117 0.883 36 H 0.074 0.926 37 H 0.144 0.856 38 H 0.108 0.892 39 H 0.115 0.885 40 H 0.119 0.881 41 H 0.170 0.830 42 H 0.138 0.862 43 H 0.083 0.917 44 H 0.142 0.858 45 H 0.161 0.839 46 H 0.114 0.886 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -19.831 -12.688 -23.213 33.062 hybrid contribution 0.562 0.119 1.111 1.250 sum -19.269 -12.569 -22.102 31.903 Atomic orbital electron populations 1.21742 0.92733 1.02971 1.02504 1.21489 0.97213 0.99303 0.94288 0.92074 1.21635 0.94676 1.01569 0.97218 1.21877 0.96571 1.00904 0.97735 1.22968 1.02576 0.98140 0.82285 1.48092 1.07486 1.57785 1.17070 1.19033 0.85316 0.80926 0.83957 1.90816 1.74279 1.39576 1.36146 1.23435 0.89294 0.77650 0.79345 1.90541 1.76383 1.35153 1.34407 1.86781 1.22178 1.66193 1.50111 1.21990 0.73804 1.00775 0.98007 1.19248 1.06640 0.96823 0.96119 1.20942 0.93592 0.93109 0.98107 1.20459 1.08589 1.01753 0.91858 1.20023 0.90642 0.92339 0.89479 1.83956 1.65748 1.40266 1.23141 1.21851 1.42889 0.94678 0.89752 0.87891 1.26620 0.95841 0.97317 1.02149 1.70181 1.41239 1.11774 1.32247 0.84575 0.79537 0.77432 0.74603 1.18627 1.19607 1.17663 1.21261 1.07628 0.96193 1.01546 1.21000 0.94195 0.99631 0.91198 1.22080 0.76470 1.02653 1.00029 0.92734 0.91306 0.91244 0.90318 0.90345 0.88281 0.92604 0.85646 0.89248 0.88548 0.88093 0.82977 0.86160 0.91700 0.85825 0.83948 0.88591 0.90244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.04 9.20 71.98 0.66 -0.38 16 2 C -0.10 -1.08 2.87 -10.71 -0.03 -1.11 16 3 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 4 C -0.11 -0.83 5.17 30.62 0.16 -0.67 16 5 C -0.13 -1.22 6.06 30.53 0.19 -1.04 16 6 C 0.06 0.79 5.99 86.22 0.52 1.30 16 7 N -0.57 -10.20 2.98 -821.34 -2.45 -12.64 16 8 C 0.53 13.22 7.74 87.26 0.68 13.89 16 9 O -0.53 -17.24 16.39 9.21 0.15 -17.09 16 10 C 0.46 11.53 7.89 70.84 0.56 12.09 16 11 O -0.48 -10.75 12.93 20.63 0.27 -10.49 16 12 O -0.34 -9.70 10.08 -49.74 -0.50 -10.20 16 13 C 0.13 3.12 5.59 71.24 0.40 3.52 16 14 C -0.19 -5.99 5.52 -19.83 -0.11 -6.10 16 15 C -0.04 -1.33 9.69 22.25 0.22 -1.11 16 16 C -0.21 -8.80 9.99 22.39 0.22 -8.58 16 17 C 0.13 6.31 6.65 22.58 0.15 6.46 16 18 O -0.23 -13.55 9.76 -22.72 -0.22 -13.77 16 19 C -0.42 -24.14 9.45 67.92 0.64 -23.50 16 20 H 0.10 5.47 5.28 -2.91 -0.02 5.45 16 21 C -0.02 -1.20 5.49 84.83 0.47 -0.73 16 22 N -0.92 -56.13 13.67 21.61 0.30 -55.83 16 23 Si 1.02 42.70 29.55 68.60 2.03 44.73 16 24 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 25 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 26 H -0.25 -9.86 7.11 99.48 0.71 -9.16 16 27 C -0.25 -10.81 9.14 22.39 0.20 -10.60 16 28 C -0.04 -1.48 9.69 22.25 0.22 -1.26 16 29 C 0.11 1.53 5.73 86.36 0.49 2.03 16 30 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 32 H 0.07 0.37 8.14 -2.39 -0.02 0.35 16 33 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 34 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 35 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 36 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 37 H 0.13 2.01 4.24 -54.04 -0.23 1.78 16 38 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.10 2.05 8.08 -2.39 -0.02 2.03 16 40 H 0.10 2.06 8.08 -2.39 -0.02 2.04 16 41 H 0.15 3.94 8.06 -2.91 -0.02 3.92 16 42 H 0.12 4.98 8.06 -2.91 -0.02 4.96 16 43 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 44 H 0.12 5.46 5.70 -2.91 -0.02 5.45 16 45 H 0.14 4.03 8.06 -2.91 -0.02 4.00 16 46 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 47 H 0.08 1.44 7.00 -2.39 -0.02 1.43 16 Total: -1.00 -74.60 390.83 5.97 -68.64 By element: Atomic # 1 Polarization: 21.67 SS G_CDS: 0.77 Total: 22.44 kcal Atomic # 6 Polarization: -21.42 SS G_CDS: 5.63 Total: -15.80 kcal Atomic # 7 Polarization: -66.32 SS G_CDS: -2.15 Total: -68.47 kcal Atomic # 8 Polarization: -51.23 SS G_CDS: -0.31 Total: -51.54 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.73 kcal Total: -74.60 5.97 -68.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805560737.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.516 kcal (2) G-P(sol) polarization free energy of solvation -74.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds