Wall clock time and date at job start Wed Apr 1 2020 04:06:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.31001 * 119.99518 * 2 1 4 4 C 1.50699 * 120.00236 * 0.02562 * 3 2 1 5 5 O 1.42905 * 109.46972 * 135.00068 * 4 3 2 6 6 C 1.35896 * 117.00039 * 180.02562 * 5 4 3 7 7 C 1.38761 * 120.05444 * 359.72609 * 6 5 4 8 8 C 1.38126 * 119.94124 * 179.70419 * 7 6 5 9 9 C 1.38281 * 120.05692 * 0.59132 * 8 7 6 10 10 C 1.38248 * 120.10986 * 359.67803 * 9 8 7 11 11 C 1.50704 * 119.96902 * 180.02562 * 10 9 8 12 12 C 1.50701 * 109.47067 * 270.02492 * 11 10 9 13 13 O 1.20833 * 120.00070 * 0.02562 * 12 11 10 14 14 O 1.34229 * 120.00089 * 180.02562 * 12 11 10 15 15 C 1.45199 * 117.00136 * 180.02562 * 14 12 11 16 16 C 1.50696 * 109.47295 * 180.02562 * 15 14 12 17 17 O 1.21283 * 119.99754 * 359.97438 * 16 15 14 18 18 N 1.34772 * 120.00202 * 180.02562 * 16 15 14 19 19 C 1.46505 * 120.00266 * 179.97438 * 18 16 15 20 20 C 1.50697 * 109.47448 * 179.97438 * 19 18 16 21 21 H 1.08000 * 119.99690 * 359.97438 * 20 19 18 22 22 C 1.37870 * 120.00000 * 179.97438 * 20 19 18 23 23 N 1.31514 * 120.00363 * 359.97438 * 22 20 19 24 24 Si 1.86806 * 119.99916 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.47019 * 90.00243 * 24 22 20 26 26 H 1.48499 * 109.47133 * 209.99980 * 24 22 20 27 27 H 1.48503 * 109.47154 * 330.00054 * 24 22 20 28 28 C 1.38159 * 120.05896 * 0.02706 * 10 9 8 29 29 H 1.08998 * 109.47296 * 60.00162 * 1 2 3 30 30 H 1.09009 * 109.46947 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47146 * 299.99325 * 1 2 3 32 32 H 1.07998 * 120.00384 * 180.02562 * 2 1 3 33 33 H 1.08003 * 119.99629 * 180.02562 * 3 2 1 34 34 H 1.09000 * 109.47247 * 15.00003 * 4 3 2 35 35 H 1.09001 * 109.47358 * 254.99430 * 4 3 2 36 36 H 1.07995 * 120.02644 * 359.97150 * 7 6 5 37 37 H 1.07997 * 119.96820 * 180.29410 * 8 7 6 38 38 H 1.08002 * 119.94662 * 179.70702 * 9 8 7 39 39 H 1.08996 * 109.47381 * 30.02342 * 11 10 9 40 40 H 1.08994 * 109.46886 * 150.02908 * 11 10 9 41 41 H 1.09003 * 109.46882 * 300.00022 * 15 14 12 42 42 H 1.08994 * 109.47209 * 59.99711 * 15 14 12 43 43 H 0.97004 * 120.00142 * 359.97438 * 18 16 15 44 44 H 1.09000 * 109.46588 * 299.99664 * 19 18 16 45 45 H 1.09007 * 109.46966 * 59.99334 * 19 18 16 46 46 H 0.96998 * 120.00309 * 179.97438 * 23 22 20 47 47 H 1.07999 * 120.03264 * 180.02562 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1619 1.1346 0.0000 4 6 1.4083 2.4396 0.0006 5 8 1.9956 3.3283 0.9533 6 6 1.4307 4.5578 1.0801 7 6 0.3370 4.9039 0.2994 8 6 -0.2391 6.1520 0.4345 9 6 0.2807 7.0606 1.3381 10 6 1.3737 6.7201 2.1131 11 6 1.9372 7.7125 3.0973 12 6 2.9939 8.5468 2.4202 13 8 3.2616 8.3555 1.2576 14 8 3.6377 9.5025 3.1087 15 6 4.6427 10.2674 2.3924 16 6 5.2546 11.2855 3.3197 17 8 4.8801 11.3595 4.4709 18 7 6.2171 12.1145 2.8695 19 6 6.8116 13.1047 3.7709 20 6 7.8547 13.8985 3.0275 21 1 8.0552 13.6864 1.9877 22 6 8.5532 14.8955 3.6748 23 7 8.3088 15.1542 4.9409 24 14 9.8458 15.8800 2.7530 25 1 9.2114 17.0702 2.1315 26 1 10.9016 16.3198 3.7001 27 1 10.4518 15.0327 1.6947 28 6 1.9499 5.4708 1.9861 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0278 -0.0005 31 1 -0.3633 0.5137 0.8901 32 1 2.0470 -0.9353 -0.0004 33 1 3.2419 1.1346 -0.0004 34 1 0.3671 2.2579 0.2669 35 1 1.4567 2.8876 -0.9920 36 1 -0.0660 4.1966 -0.4102 37 1 -1.0932 6.4202 -0.1695 38 1 -0.1683 8.0377 1.4390 39 1 1.1383 8.3606 3.4576 40 1 2.3794 7.1789 3.9385 41 1 5.4195 9.5951 2.0280 42 1 4.1781 10.7771 1.5483 43 1 6.5163 12.0556 1.9487 44 1 6.0347 13.7767 4.1355 45 1 7.2765 12.5949 4.6149 46 1 8.8004 15.8554 5.3963 47 1 2.8035 5.2051 2.5920 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000837938918.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:06:19 Heat of formation + Delta-G solvation = -123.447175 kcal Electronic energy + Delta-G solvation = -28028.832598 eV Core-core repulsion = 23756.506901 eV Total energy + Delta-G solvation = -4272.325697 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.85617 -40.28893 -38.78936 -38.11867 -36.34045 -35.84190 -34.24581 -33.09506 -32.40845 -30.82141 -29.50263 -28.67240 -28.07205 -26.54947 -25.99685 -23.01960 -22.75661 -22.13222 -20.74502 -19.93193 -19.18068 -18.23903 -17.82333 -17.39464 -16.91764 -16.79546 -16.37408 -16.16521 -16.09340 -15.42210 -15.22972 -15.04114 -14.75299 -14.49455 -14.20958 -14.09279 -13.88101 -13.60279 -13.25910 -13.08518 -13.03163 -12.75718 -12.40025 -12.34475 -12.26541 -11.99471 -11.88706 -11.74403 -11.64536 -11.36871 -11.07266 -11.01737 -10.92136 -10.68420 -10.61924 -10.34596 -9.68822 -9.44238 -9.22812 -9.14092 -8.78334 -8.49152 -7.98842 -6.19708 -4.27159 0.90983 1.16306 1.47549 2.12884 2.46148 2.95365 3.18126 3.23202 3.29469 3.31838 3.47342 4.02481 4.19464 4.30328 4.33658 4.45761 4.50512 4.65501 4.68968 4.72622 4.78989 4.82804 4.86431 4.99382 5.05202 5.12364 5.16507 5.17773 5.24825 5.26272 5.32642 5.34846 5.36360 5.47334 5.69019 5.95751 6.00538 6.09568 6.14276 6.24281 6.33209 6.44145 7.08156 7.22514 7.30840 7.45690 7.59160 7.69543 7.91854 8.50020 8.71069 8.96423 9.39340 10.90438 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.022604 B = 0.001404 C = 0.001364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.442490 B =19935.202174 C =20522.313724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.141 4.141 3 C -0.164 4.164 4 C 0.085 3.915 5 O -0.311 6.311 6 C 0.130 3.870 7 C -0.207 4.207 8 C -0.079 4.079 9 C -0.139 4.139 10 C -0.036 4.036 11 C -0.074 4.074 12 C 0.461 3.539 13 O -0.502 6.502 14 O -0.329 6.329 15 C 0.049 3.951 16 C 0.499 3.501 17 O -0.534 6.534 18 N -0.707 5.707 19 C 0.251 3.749 20 C -0.545 4.545 21 H 0.064 0.936 22 C 0.065 3.935 23 N -0.885 5.885 24 Si 0.905 3.095 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.272 1.272 28 C -0.133 4.133 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.119 0.881 33 H 0.121 0.879 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.126 0.874 37 H 0.126 0.874 38 H 0.125 0.875 39 H 0.121 0.879 40 H 0.120 0.880 41 H 0.097 0.903 42 H 0.097 0.903 43 H 0.393 0.607 44 H 0.030 0.970 45 H 0.030 0.970 46 H 0.267 0.733 47 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.203 -27.717 -11.096 35.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.159 4.159 3 C -0.182 4.182 4 C 0.011 3.989 5 O -0.225 6.225 6 C 0.085 3.915 7 C -0.225 4.225 8 C -0.097 4.097 9 C -0.157 4.157 10 C -0.036 4.036 11 C -0.111 4.111 12 C 0.304 3.696 13 O -0.390 6.390 14 O -0.244 6.244 15 C -0.028 4.028 16 C 0.282 3.718 17 O -0.412 6.412 18 N -0.357 5.357 19 C 0.131 3.869 20 C -0.584 4.584 21 H 0.082 0.918 22 C -0.139 4.139 23 N -0.522 5.522 24 Si 0.732 3.268 25 H -0.204 1.204 26 H -0.210 1.210 27 H -0.197 1.197 28 C -0.152 4.152 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.137 0.863 33 H 0.139 0.861 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.144 0.856 37 H 0.144 0.856 38 H 0.143 0.857 39 H 0.139 0.861 40 H 0.138 0.862 41 H 0.115 0.885 42 H 0.115 0.885 43 H 0.226 0.774 44 H 0.048 0.952 45 H 0.048 0.952 46 H 0.076 0.924 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -19.129 -27.635 -10.336 35.163 hybrid contribution 0.903 0.573 -1.286 1.673 sum -18.227 -27.063 -11.622 34.636 Atomic orbital electron populations 1.20980 0.93203 1.02878 1.02184 1.22879 0.96418 0.97804 0.98822 1.22532 1.00598 0.92256 1.02814 1.21854 0.96782 0.88085 0.92199 1.86092 1.55604 1.22253 1.58569 1.18868 0.92561 0.84877 0.95202 1.21237 0.98924 0.99166 1.03214 1.20880 0.98966 0.92684 0.97138 1.20939 0.97381 0.99965 0.97398 1.19031 0.95156 0.92978 0.96424 1.20301 0.96766 0.96074 0.97965 1.23556 0.81451 0.78848 0.85781 1.90699 1.63686 1.67042 1.17542 1.86558 1.49071 1.45191 1.43587 1.22857 0.90991 0.94082 0.94893 1.19897 0.81215 0.82327 0.88333 1.90708 1.61586 1.70502 1.18380 1.46368 1.37574 1.35879 1.15856 1.19180 0.92981 0.85548 0.89220 1.21208 1.21001 1.18466 0.97698 0.91771 1.24944 0.97209 0.96856 0.94917 1.69970 1.41211 1.31371 1.09646 0.86396 0.80841 0.80140 0.79424 1.20427 1.20965 1.19719 1.20241 1.01829 0.92525 1.00596 0.91437 0.91622 0.91158 0.86302 0.86087 0.91078 0.91080 0.85615 0.85566 0.85659 0.86099 0.86200 0.88545 0.88541 0.77430 0.95242 0.95238 0.92369 0.85066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.52 8.70 36.01 0.31 -0.21 16 2 C -0.14 -0.71 10.26 -36.03 -0.37 -1.08 16 3 C -0.16 -1.04 9.89 -36.03 -0.36 -1.40 16 4 C 0.09 0.59 4.87 36.01 0.18 0.77 16 5 O -0.31 -3.14 10.12 -19.41 -0.20 -3.34 16 6 C 0.13 1.34 6.69 -39.21 -0.26 1.08 16 7 C -0.21 -1.79 9.04 -39.43 -0.36 -2.15 16 8 C -0.08 -0.66 10.04 -39.61 -0.40 -1.05 16 9 C -0.14 -1.28 9.70 -39.56 -0.38 -1.66 16 10 C -0.04 -0.36 4.37 -104.64 -0.46 -0.82 16 11 C -0.07 -0.68 5.94 -29.03 -0.17 -0.86 16 12 C 0.46 6.09 7.95 36.01 0.29 6.38 16 13 O -0.50 -7.75 15.78 -18.76 -0.30 -8.05 16 14 O -0.33 -5.09 9.75 -45.90 -0.45 -5.54 16 15 C 0.05 0.75 5.94 36.00 0.21 0.97 16 16 C 0.50 10.01 7.91 -10.99 -0.09 9.92 16 17 O -0.53 -13.02 16.50 -14.11 -0.23 -13.25 16 18 N -0.71 -14.62 5.55 -61.47 -0.34 -14.97 16 19 C 0.25 6.56 5.43 -5.19 -0.03 6.53 16 20 C -0.55 -14.62 9.28 -34.44 -0.32 -14.94 16 21 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 22 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 23 N -0.88 -25.82 13.29 55.43 0.74 -25.09 16 24 Si 0.90 20.68 29.54 -169.99 -5.02 15.66 16 25 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 26 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 27 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 28 C -0.13 -1.41 9.64 -39.44 -0.38 -1.79 16 29 H 0.07 0.22 8.02 -51.93 -0.42 -0.20 16 30 H 0.06 0.19 8.14 -51.92 -0.42 -0.23 16 31 H 0.07 0.29 7.49 -51.93 -0.39 -0.10 16 32 H 0.12 0.45 8.06 -52.49 -0.42 0.03 16 33 H 0.12 0.77 8.06 -52.48 -0.42 0.34 16 34 H 0.07 0.40 5.51 -51.93 -0.29 0.12 16 35 H 0.07 0.44 7.65 -51.93 -0.40 0.04 16 36 H 0.13 0.80 6.30 -52.49 -0.33 0.47 16 37 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 38 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 39 H 0.12 0.86 8.08 -51.93 -0.42 0.44 16 40 H 0.12 0.90 8.08 -51.93 -0.42 0.48 16 41 H 0.10 1.30 8.13 -51.93 -0.42 0.88 16 42 H 0.10 1.29 8.13 -51.93 -0.42 0.86 16 43 H 0.39 6.85 8.32 -40.82 -0.34 6.51 16 44 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 46 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 47 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 LS Contribution 409.30 15.07 6.17 6.17 Total: -1.00 -35.17 409.30 -9.07 -44.24 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -6.76 Total: 2.78 kcal Atomic # 6 Polarization: 4.06 SS G_CDS: -2.68 Total: 1.38 kcal Atomic # 7 Polarization: -40.45 SS G_CDS: 0.40 Total: -40.05 kcal Atomic # 8 Polarization: -29.01 SS G_CDS: -1.17 Total: -30.18 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -35.17 -9.07 -44.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837938918.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.203 kcal (2) G-P(sol) polarization free energy of solvation -35.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds