Wall clock time and date at job start Wed Apr 1 2020 04:06:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.31001 * 119.99518 * 2 1 4 4 C 1.50699 * 120.00236 * 0.02562 * 3 2 1 5 5 O 1.42905 * 109.46972 * 135.00068 * 4 3 2 6 6 C 1.35896 * 117.00039 * 180.02562 * 5 4 3 7 7 C 1.38761 * 120.05444 * 359.72609 * 6 5 4 8 8 C 1.38126 * 119.94124 * 179.70419 * 7 6 5 9 9 C 1.38281 * 120.05692 * 0.59132 * 8 7 6 10 10 C 1.38248 * 120.10986 * 359.67803 * 9 8 7 11 11 C 1.50704 * 119.96902 * 180.02562 * 10 9 8 12 12 C 1.50701 * 109.47067 * 270.02492 * 11 10 9 13 13 O 1.20833 * 120.00070 * 0.02562 * 12 11 10 14 14 O 1.34229 * 120.00089 * 180.02562 * 12 11 10 15 15 C 1.45199 * 117.00136 * 180.02562 * 14 12 11 16 16 C 1.50696 * 109.47295 * 180.02562 * 15 14 12 17 17 O 1.21283 * 119.99754 * 359.97438 * 16 15 14 18 18 N 1.34772 * 120.00202 * 180.02562 * 16 15 14 19 19 C 1.46505 * 120.00266 * 179.97438 * 18 16 15 20 20 C 1.50697 * 109.47448 * 179.97438 * 19 18 16 21 21 H 1.08000 * 119.99690 * 359.97438 * 20 19 18 22 22 C 1.37870 * 120.00000 * 179.97438 * 20 19 18 23 23 N 1.31514 * 120.00363 * 359.97438 * 22 20 19 24 24 Si 1.86806 * 119.99916 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.47019 * 90.00243 * 24 22 20 26 26 H 1.48499 * 109.47133 * 209.99980 * 24 22 20 27 27 H 1.48503 * 109.47154 * 330.00054 * 24 22 20 28 28 C 1.38159 * 120.05896 * 0.02706 * 10 9 8 29 29 H 1.08998 * 109.47296 * 60.00162 * 1 2 3 30 30 H 1.09009 * 109.46947 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47146 * 299.99325 * 1 2 3 32 32 H 1.07998 * 120.00384 * 180.02562 * 2 1 3 33 33 H 1.08003 * 119.99629 * 180.02562 * 3 2 1 34 34 H 1.09000 * 109.47247 * 15.00003 * 4 3 2 35 35 H 1.09001 * 109.47358 * 254.99430 * 4 3 2 36 36 H 1.07995 * 120.02644 * 359.97150 * 7 6 5 37 37 H 1.07997 * 119.96820 * 180.29410 * 8 7 6 38 38 H 1.08002 * 119.94662 * 179.70702 * 9 8 7 39 39 H 1.08996 * 109.47381 * 30.02342 * 11 10 9 40 40 H 1.08994 * 109.46886 * 150.02908 * 11 10 9 41 41 H 1.09003 * 109.46882 * 300.00022 * 15 14 12 42 42 H 1.08994 * 109.47209 * 59.99711 * 15 14 12 43 43 H 0.97004 * 120.00142 * 359.97438 * 18 16 15 44 44 H 1.09000 * 109.46588 * 299.99664 * 19 18 16 45 45 H 1.09007 * 109.46966 * 59.99334 * 19 18 16 46 46 H 0.96998 * 120.00309 * 179.97438 * 23 22 20 47 47 H 1.07999 * 120.03264 * 180.02562 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1619 1.1346 0.0000 4 6 1.4083 2.4396 0.0006 5 8 1.9956 3.3283 0.9533 6 6 1.4307 4.5578 1.0801 7 6 0.3370 4.9039 0.2994 8 6 -0.2391 6.1520 0.4345 9 6 0.2807 7.0606 1.3381 10 6 1.3737 6.7201 2.1131 11 6 1.9372 7.7125 3.0973 12 6 2.9939 8.5468 2.4202 13 8 3.2616 8.3555 1.2576 14 8 3.6377 9.5025 3.1087 15 6 4.6427 10.2674 2.3924 16 6 5.2546 11.2855 3.3197 17 8 4.8801 11.3595 4.4709 18 7 6.2171 12.1145 2.8695 19 6 6.8116 13.1047 3.7709 20 6 7.8547 13.8985 3.0275 21 1 8.0552 13.6864 1.9877 22 6 8.5532 14.8955 3.6748 23 7 8.3088 15.1542 4.9409 24 14 9.8458 15.8800 2.7530 25 1 9.2114 17.0702 2.1315 26 1 10.9016 16.3198 3.7001 27 1 10.4518 15.0327 1.6947 28 6 1.9499 5.4708 1.9861 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0278 -0.0005 31 1 -0.3633 0.5137 0.8901 32 1 2.0470 -0.9353 -0.0004 33 1 3.2419 1.1346 -0.0004 34 1 0.3671 2.2579 0.2669 35 1 1.4567 2.8876 -0.9920 36 1 -0.0660 4.1966 -0.4102 37 1 -1.0932 6.4202 -0.1695 38 1 -0.1683 8.0377 1.4390 39 1 1.1383 8.3606 3.4576 40 1 2.3794 7.1789 3.9385 41 1 5.4195 9.5951 2.0280 42 1 4.1781 10.7771 1.5483 43 1 6.5163 12.0556 1.9487 44 1 6.0347 13.7767 4.1355 45 1 7.2765 12.5949 4.6149 46 1 8.8004 15.8554 5.3963 47 1 2.8035 5.2051 2.5920 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000837938918.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:06:19 Heat of formation + Delta-G solvation = -144.422222 kcal Electronic energy + Delta-G solvation = -28029.742144 eV Core-core repulsion = 23756.506901 eV Total energy + Delta-G solvation = -4273.235243 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.84964 -41.10910 -40.36470 -38.86033 -37.48257 -36.31654 -36.17828 -34.41744 -33.82393 -31.47585 -30.90948 -29.22096 -29.12165 -28.09111 -26.50111 -24.69531 -23.62518 -23.10275 -21.66387 -21.60420 -19.63485 -19.31242 -18.88007 -18.75626 -17.93749 -17.77890 -17.40964 -17.08449 -16.96618 -16.88210 -16.75871 -16.21221 -15.87207 -15.67629 -15.18825 -14.77084 -14.67395 -14.47584 -14.30785 -14.17267 -14.06656 -13.78929 -13.72225 -13.65499 -13.27537 -12.98421 -12.93851 -12.71745 -12.68415 -12.51525 -12.23216 -12.18683 -11.97751 -11.89349 -11.70439 -11.57910 -11.49863 -10.91042 -10.81658 -10.11238 -9.92886 -9.87888 -9.17436 -8.29515 -6.46134 0.20110 0.47460 1.03563 1.10826 1.34285 1.45178 1.46234 1.55551 1.57821 2.33243 2.37615 2.55947 2.84392 3.05845 3.51983 3.66881 3.77704 3.86822 3.92289 4.02155 4.04166 4.08770 4.08802 4.20324 4.26909 4.30500 4.35073 4.42255 4.50288 4.60356 4.72898 4.77307 5.00595 5.03301 5.07697 5.09219 5.22125 5.27881 5.30538 5.42019 5.43961 5.55777 5.60742 5.63096 5.71196 5.81824 5.82205 6.44141 6.59712 6.63368 6.78861 7.20523 7.35664 8.82608 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.022604 B = 0.001404 C = 0.001364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.442490 B =19935.202174 C =20522.313724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.130 4.130 3 C -0.188 4.188 4 C 0.082 3.918 5 O -0.332 6.332 6 C 0.114 3.886 7 C -0.208 4.208 8 C -0.081 4.081 9 C -0.149 4.149 10 C -0.046 4.046 11 C -0.069 4.069 12 C 0.465 3.535 13 O -0.525 6.525 14 O -0.347 6.347 15 C 0.061 3.939 16 C 0.499 3.501 17 O -0.583 6.583 18 N -0.699 5.699 19 C 0.266 3.734 20 C -0.558 4.558 21 H 0.085 0.915 22 C 0.006 3.994 23 N -0.930 5.930 24 Si 0.984 3.016 25 H -0.271 1.271 26 H -0.284 1.284 27 H -0.256 1.256 28 C -0.155 4.155 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.068 0.932 32 H 0.130 0.870 33 H 0.114 0.886 34 H 0.084 0.916 35 H 0.076 0.924 36 H 0.147 0.853 37 H 0.153 0.847 38 H 0.141 0.859 39 H 0.146 0.854 40 H 0.137 0.863 41 H 0.120 0.880 42 H 0.123 0.877 43 H 0.412 0.588 44 H -0.007 1.007 45 H -0.007 1.007 46 H 0.269 0.731 47 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.033 -28.543 -13.497 37.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.148 4.148 3 C -0.206 4.206 4 C 0.008 3.992 5 O -0.246 6.246 6 C 0.069 3.931 7 C -0.227 4.227 8 C -0.098 4.098 9 C -0.167 4.167 10 C -0.046 4.046 11 C -0.106 4.106 12 C 0.309 3.691 13 O -0.414 6.414 14 O -0.263 6.263 15 C -0.016 4.016 16 C 0.285 3.715 17 O -0.463 6.463 18 N -0.351 5.351 19 C 0.144 3.856 20 C -0.595 4.595 21 H 0.103 0.897 22 C -0.194 4.194 23 N -0.568 5.568 24 Si 0.807 3.193 25 H -0.196 1.196 26 H -0.210 1.210 27 H -0.180 1.180 28 C -0.173 4.173 29 H 0.094 0.906 30 H 0.095 0.905 31 H 0.087 0.913 32 H 0.148 0.852 33 H 0.132 0.868 34 H 0.102 0.898 35 H 0.094 0.906 36 H 0.165 0.835 37 H 0.171 0.829 38 H 0.159 0.841 39 H 0.164 0.836 40 H 0.154 0.846 41 H 0.138 0.862 42 H 0.141 0.859 43 H 0.248 0.752 44 H 0.011 0.989 45 H 0.011 0.989 46 H 0.078 0.922 47 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -19.972 -28.498 -12.788 37.075 hybrid contribution 1.076 0.711 -0.531 1.395 sum -18.897 -27.787 -13.319 36.147 Atomic orbital electron populations 1.21043 0.92249 1.03770 1.02465 1.23127 0.97257 0.97751 0.96656 1.22544 1.00450 0.92606 1.05013 1.22028 0.97429 0.87804 0.91902 1.86065 1.56428 1.22581 1.59553 1.19082 0.93304 0.85049 0.95713 1.21530 0.98249 0.99841 1.03051 1.21249 0.99441 0.92247 0.96896 1.21246 0.97226 1.00903 0.97294 1.19141 0.95667 0.92828 0.97007 1.20450 0.96289 0.95873 0.97960 1.24245 0.81257 0.78022 0.85542 1.90686 1.64516 1.67581 1.18636 1.86564 1.49312 1.45927 1.44455 1.22700 0.91954 0.93450 0.93499 1.20695 0.80159 0.82308 0.88314 1.90684 1.62911 1.71847 1.20863 1.46051 1.37777 1.35141 1.16083 1.18639 0.91991 0.85718 0.89300 1.21609 1.20832 1.18450 0.98652 0.89664 1.26028 0.99598 0.98053 0.95697 1.70128 1.42701 1.32274 1.11716 0.85165 0.77505 0.78486 0.78112 1.19611 1.20985 1.18003 1.20400 1.02289 0.93321 1.01334 0.90597 0.90502 0.91320 0.85183 0.86821 0.89766 0.90567 0.83502 0.82923 0.84135 0.83646 0.84562 0.86206 0.85922 0.75178 0.98870 0.98935 0.92195 0.85474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.83 8.70 71.24 0.62 -0.21 16 2 C -0.13 -1.15 10.26 25.65 0.26 -0.89 16 3 C -0.19 -2.34 9.89 25.65 0.25 -2.08 16 4 C 0.08 1.10 4.87 71.24 0.35 1.45 16 5 O -0.33 -6.74 10.12 -92.39 -0.93 -7.68 16 6 C 0.11 2.30 6.69 22.51 0.15 2.45 16 7 C -0.21 -3.29 9.04 22.37 0.20 -3.09 16 8 C -0.08 -1.17 10.04 22.25 0.22 -0.95 16 9 C -0.15 -2.47 9.70 22.28 0.22 -2.25 16 10 C -0.05 -0.88 4.37 -19.88 -0.09 -0.97 16 11 C -0.07 -1.18 5.94 29.10 0.17 -1.01 16 12 C 0.47 11.68 7.95 71.24 0.57 12.25 16 13 O -0.53 -15.52 15.78 21.94 0.35 -15.17 16 14 O -0.35 -10.37 9.75 -45.06 -0.44 -10.81 16 15 C 0.06 1.77 5.94 71.23 0.42 2.19 16 16 C 0.50 20.08 7.91 87.66 0.69 20.78 16 17 O -0.58 -29.25 16.50 15.76 0.26 -28.99 16 18 N -0.70 -29.00 5.55 -466.78 -2.59 -31.59 16 19 C 0.27 14.39 5.43 85.63 0.46 14.85 16 20 C -0.56 -29.90 9.28 25.60 0.24 -29.66 16 21 H 0.09 4.11 7.60 -2.91 -0.02 4.09 16 22 C 0.01 0.33 5.46 84.65 0.46 0.80 16 23 N -0.93 -55.53 13.29 21.44 0.28 -55.25 16 24 Si 0.98 41.91 29.54 68.60 2.03 43.94 16 25 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 26 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 27 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 28 C -0.15 -3.27 9.64 22.36 0.22 -3.05 16 29 H 0.08 0.35 8.02 -2.39 -0.02 0.33 16 30 H 0.08 0.30 8.14 -2.38 -0.02 0.28 16 31 H 0.07 0.46 7.49 -2.39 -0.02 0.44 16 32 H 0.13 0.82 8.06 -2.91 -0.02 0.79 16 33 H 0.11 1.51 8.06 -2.91 -0.02 1.48 16 34 H 0.08 0.85 5.51 -2.39 -0.01 0.84 16 35 H 0.08 0.89 7.65 -2.39 -0.02 0.87 16 36 H 0.15 1.56 6.30 -2.91 -0.02 1.54 16 37 H 0.15 1.33 8.06 -2.91 -0.02 1.30 16 38 H 0.14 1.81 8.06 -2.91 -0.02 1.78 16 39 H 0.15 1.76 8.08 -2.39 -0.02 1.74 16 40 H 0.14 1.88 8.08 -2.39 -0.02 1.86 16 41 H 0.12 2.97 8.13 -2.39 -0.02 2.95 16 42 H 0.12 2.97 8.13 -2.39 -0.02 2.95 16 43 H 0.41 13.82 8.32 -92.71 -0.77 13.05 16 44 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 45 H -0.01 -0.44 8.14 -2.38 -0.02 -0.46 16 46 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 47 H 0.13 2.61 8.06 -2.91 -0.02 2.58 16 Total: -1.00 -78.52 409.30 4.59 -73.93 By element: Atomic # 1 Polarization: 20.79 SS G_CDS: 0.22 Total: 21.01 kcal Atomic # 6 Polarization: 5.18 SS G_CDS: 5.42 Total: 10.60 kcal Atomic # 7 Polarization: -84.53 SS G_CDS: -2.30 Total: -86.83 kcal Atomic # 8 Polarization: -61.88 SS G_CDS: -0.77 Total: -62.65 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 2.03 Total: 43.94 kcal Total: -78.52 4.59 -73.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837938918.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.492 kcal (2) G-P(sol) polarization free energy of solvation -78.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds