Wall clock time and date at job start Wed Apr 1 2020 04:21:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47408 * 2 1 4 4 N 1.46499 * 109.47376 * 179.97438 * 3 2 1 5 5 C 1.46769 * 124.34737 * 89.99703 * 4 3 2 6 6 C 1.54481 * 105.47057 * 163.00775 * 5 4 3 7 7 H 1.09000 * 110.96738 * 267.25866 * 6 5 4 8 8 C 1.50700 * 110.96763 * 143.53491 * 6 5 4 9 9 O 1.20827 * 120.00234 * 359.97438 * 8 6 5 10 10 O 1.34232 * 119.99675 * 179.97438 * 8 6 5 11 11 C 1.45200 * 116.99840 * 179.97438 * 10 8 6 12 12 C 1.50694 * 109.47178 * 180.02562 * 11 10 8 13 13 C 1.38299 * 119.93328 * 89.99984 * 12 11 10 14 14 C 1.38095 * 120.07276 * 180.02562 * 13 12 11 15 15 C 1.38880 * 119.93329 * 359.97438 * 14 13 12 16 16 O 1.35747 * 120.07665 * 180.02562 * 15 14 13 17 17 C 1.34831 * 116.99293 * 5.53682 * 16 15 14 18 18 H 1.07999 * 120.00441 * 354.93841 * 17 16 15 19 19 C 1.38659 * 119.99500 * 174.94595 * 17 16 15 20 20 N 1.31553 * 120.00475 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99843 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46999 * 180.02562 * 21 19 17 23 23 H 1.48500 * 109.47351 * 299.99979 * 21 19 17 24 24 H 1.48500 * 109.47284 * 59.99648 * 21 19 17 25 25 C 1.38884 * 119.85707 * 0.27286 * 15 14 13 26 26 C 1.38102 * 119.93124 * 359.49665 * 25 15 14 27 27 C 1.54629 * 101.76651 * 25.41472 * 6 5 4 28 28 C 1.34415 * 124.35083 * 270.02579 * 4 3 2 29 29 O 1.21280 * 124.93970 * 0.37738 * 28 4 3 30 30 H 1.08993 * 109.46916 * 59.99853 * 1 2 3 31 31 H 1.08995 * 109.47013 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46533 * 300.00270 * 1 2 3 33 33 H 1.08994 * 109.46861 * 239.99391 * 2 1 3 34 34 H 1.09005 * 109.46821 * 119.99709 * 2 1 3 35 35 H 1.09005 * 109.47219 * 59.99586 * 3 2 1 36 36 H 1.09001 * 109.46773 * 300.00421 * 3 2 1 37 37 H 1.08993 * 110.24434 * 44.00731 * 5 4 3 38 38 H 1.08997 * 110.31956 * 282.04490 * 5 4 3 39 39 H 1.09004 * 109.47176 * 59.99566 * 11 10 8 40 40 H 1.09003 * 109.47281 * 300.00610 * 11 10 8 41 41 H 1.08003 * 119.96363 * 0.02562 * 13 12 11 42 42 H 1.08008 * 120.03520 * 179.97438 * 14 13 12 43 43 H 0.97006 * 119.99673 * 0.02562 * 20 19 17 44 44 H 1.07995 * 120.03547 * 179.72775 * 25 15 14 45 45 H 1.07994 * 119.96787 * 180.23478 * 26 25 15 46 46 H 1.09006 * 110.48480 * 93.87800 * 27 6 5 47 47 H 1.08994 * 110.48624 * 216.52492 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.3337 1.4422 -1.2108 6 6 5.7416 1.8774 -0.7472 7 1 5.8680 2.9557 -0.8438 8 6 6.8122 1.1410 -1.5104 9 8 6.5051 0.3339 -2.3555 10 8 8.1071 1.3819 -1.2514 11 6 9.0839 0.6358 -2.0245 12 6 10.4730 1.0353 -1.5984 13 6 11.1039 0.3525 -0.5745 14 6 12.3767 0.7165 -0.1813 15 6 13.0235 1.7692 -0.8157 16 8 14.2749 2.1291 -0.4319 17 6 14.8787 1.3536 0.4910 18 1 14.3375 0.5395 0.9501 19 6 16.1947 1.6014 0.8509 20 7 16.8541 2.5928 0.2915 21 14 17.0312 0.5274 2.1301 22 1 18.4250 0.9969 2.3356 23 1 16.2865 0.6131 3.4120 24 1 17.0469 -0.8812 1.6601 25 6 12.3853 2.4562 -1.8401 26 6 11.1143 2.0843 -2.2319 27 6 5.7296 1.4518 0.7393 28 6 4.2631 1.4421 1.1107 29 8 3.8337 1.4352 2.2449 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3632 0.5139 0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 1.8934 -0.5138 0.8901 35 1 1.6767 1.9563 0.8900 36 1 1.6767 1.9563 -0.8900 37 1 3.9395 2.1525 -1.9375 38 1 4.3713 0.4425 -1.6434 39 1 8.9516 0.8538 -3.0843 40 1 8.9444 -0.4316 -1.8530 41 1 10.6006 -0.4662 -0.0818 42 1 12.8687 0.1832 0.6187 43 1 16.4196 3.1507 -0.3725 44 1 12.8838 3.2780 -2.3324 45 1 10.6189 2.6156 -3.0310 46 1 6.1588 0.4564 0.8546 47 1 6.2724 2.1752 1.3476 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000840664696.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:21:25 Heat of formation + Delta-G solvation = -132.691127 kcal Electronic energy + Delta-G solvation = -28979.213519 eV Core-core repulsion = 24706.486975 eV Total energy + Delta-G solvation = -4272.726545 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.36862 -40.15649 -39.22750 -37.36486 -36.77171 -36.19828 -35.28780 -32.53230 -32.08554 -30.60325 -30.36013 -28.24762 -27.06029 -25.95784 -24.85463 -23.76062 -22.22782 -22.10275 -20.92851 -20.71487 -19.79327 -18.53171 -18.21661 -17.34965 -17.22958 -16.83939 -16.37954 -16.15555 -15.50376 -15.20627 -15.03176 -14.56222 -14.30596 -14.13745 -14.08426 -14.00887 -13.87588 -13.70663 -13.40392 -13.27050 -12.99891 -12.90951 -12.62403 -12.48997 -12.28979 -12.04902 -11.85545 -11.74241 -11.50429 -11.24124 -11.17909 -11.08455 -10.85625 -10.72289 -10.68108 -10.37781 -10.34938 -10.16094 -9.53303 -9.16906 -8.88717 -8.39445 -7.46983 -6.88761 -4.17962 1.75878 1.89280 2.02988 2.18855 2.42009 2.77973 3.18864 3.23297 3.39933 3.72648 3.88223 4.02777 4.26855 4.33913 4.45634 4.49203 4.53834 4.75560 4.78566 4.92323 4.93263 4.98148 5.04532 5.06850 5.09106 5.10603 5.15369 5.29673 5.33944 5.39375 5.47546 5.52423 5.56739 5.63368 5.63814 5.77148 6.00784 6.08302 6.20410 6.30998 6.45432 6.63752 6.66811 6.89488 7.06075 7.15430 7.44073 7.51894 7.56192 7.74863 8.27374 8.78592 9.45546 10.54814 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.020648 B = 0.001709 C = 0.001633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.750502 B =16378.003888 C =17138.066019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.144 4.144 3 C 0.127 3.873 4 N -0.621 5.621 5 C 0.114 3.886 6 C -0.099 4.099 7 H 0.130 0.870 8 C 0.472 3.528 9 O -0.508 6.508 10 O -0.344 6.344 11 C 0.130 3.870 12 C -0.205 4.205 13 C -0.043 4.043 14 C -0.234 4.234 15 C 0.166 3.834 16 O -0.195 6.195 17 C -0.473 4.473 18 H 0.086 0.914 19 C 0.012 3.988 20 N -0.875 5.875 21 Si 1.096 2.904 22 H -0.272 1.272 23 H -0.280 1.280 24 H -0.280 1.280 25 C -0.199 4.199 26 C -0.047 4.047 27 C -0.142 4.142 28 C 0.521 3.479 29 O -0.524 6.524 30 H 0.056 0.944 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.089 0.911 38 H 0.093 0.907 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.110 0.890 42 H 0.131 0.869 43 H 0.283 0.717 44 H 0.119 0.881 45 H 0.114 0.886 46 H 0.111 0.889 47 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.106 -2.573 -4.062 27.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.182 4.182 3 C 0.005 3.995 4 N -0.355 5.355 5 C -0.009 4.009 6 C -0.118 4.118 7 H 0.148 0.852 8 C 0.314 3.686 9 O -0.397 6.397 10 O -0.260 6.260 11 C 0.057 3.943 12 C -0.207 4.207 13 C -0.062 4.062 14 C -0.253 4.253 15 C 0.112 3.888 16 O -0.099 6.099 17 C -0.549 4.549 18 H 0.104 0.896 19 C -0.194 4.194 20 N -0.506 5.506 21 Si 0.919 3.081 22 H -0.197 1.197 23 H -0.206 1.206 24 H -0.206 1.206 25 C -0.218 4.218 26 C -0.066 4.066 27 C -0.182 4.182 28 C 0.309 3.691 29 O -0.400 6.400 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.102 0.898 36 H 0.099 0.901 37 H 0.108 0.892 38 H 0.111 0.889 39 H 0.091 0.909 40 H 0.090 0.910 41 H 0.128 0.872 42 H 0.149 0.851 43 H 0.093 0.907 44 H 0.137 0.863 45 H 0.132 0.868 46 H 0.129 0.871 47 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -25.803 -2.842 -2.957 26.126 hybrid contribution -1.457 0.044 -1.038 1.789 sum -27.259 -2.798 -3.995 27.692 Atomic orbital electron populations 1.21690 0.94830 1.02194 1.01997 1.21933 0.96412 0.96994 1.02885 1.21485 0.77284 0.97331 1.03390 1.48331 1.06441 1.73732 1.06990 1.22031 0.87534 1.04048 0.87261 1.21888 0.91931 1.02709 0.95315 0.85173 1.22958 0.83881 0.80547 0.81194 1.90671 1.83243 1.33467 1.32295 1.86660 1.15180 1.62949 1.61231 1.21758 0.83659 0.94732 0.94115 1.18854 0.94268 1.03355 1.04174 1.20634 0.93991 0.97443 0.94115 1.21159 0.96607 1.02229 1.05313 1.19298 0.85832 0.91961 0.91753 1.83663 1.23617 1.49258 1.53317 1.22269 0.98565 1.14662 1.19377 0.89616 1.26603 0.91852 0.99495 1.01445 1.70582 1.39527 1.15641 1.24822 0.83109 0.76608 0.74352 0.74021 1.19675 1.20598 1.20618 1.20175 0.96499 1.04397 1.00732 1.20494 0.93600 0.94629 0.97845 1.22331 0.95478 1.06028 0.94390 1.20758 0.88809 0.75116 0.84459 1.90750 1.78359 1.49944 1.20962 0.92502 0.92290 0.92427 0.91550 0.91472 0.89770 0.90116 0.89235 0.88896 0.90939 0.91006 0.87182 0.85123 0.90692 0.86343 0.86789 0.87081 0.86210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.74 9.91 37.16 0.37 -0.37 16 2 C -0.14 -0.92 6.26 -26.73 -0.17 -1.09 16 3 C 0.13 0.82 5.93 -4.04 -0.02 0.80 16 4 N -0.62 -4.94 2.93 -172.42 -0.51 -5.45 16 5 C 0.11 0.76 6.71 -3.12 -0.02 0.74 16 6 C -0.10 -0.74 3.66 -90.14 -0.33 -1.07 16 7 H 0.13 0.72 8.14 -51.93 -0.42 0.30 16 8 C 0.47 5.02 7.19 36.01 0.26 5.28 16 9 O -0.51 -6.41 15.25 -18.75 -0.29 -6.70 16 10 O -0.34 -4.34 10.20 -39.26 -0.40 -4.74 16 11 C 0.13 1.72 5.59 36.00 0.20 1.92 16 12 C -0.21 -3.33 5.52 -104.58 -0.58 -3.91 16 13 C -0.04 -0.76 9.69 -39.61 -0.38 -1.14 16 14 C -0.23 -4.89 9.17 -39.40 -0.36 -5.25 16 15 C 0.17 3.84 6.65 -39.11 -0.26 3.58 16 16 O -0.20 -5.32 9.16 0.05 0.00 -5.31 16 17 C -0.47 -12.89 9.49 30.89 0.29 -12.60 16 18 H 0.09 2.18 5.20 -52.49 -0.27 1.91 16 19 C 0.01 0.33 5.49 -17.52 -0.10 0.24 16 20 N -0.87 -25.40 13.70 55.48 0.76 -24.64 16 21 Si 1.10 22.95 29.92 -169.99 -5.09 17.86 16 22 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 23 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 24 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 25 C -0.20 -3.95 9.99 -39.39 -0.39 -4.34 16 26 C -0.05 -0.79 9.69 -39.61 -0.38 -1.18 16 27 C -0.14 -1.19 6.41 -26.74 -0.17 -1.36 16 28 C 0.52 5.41 8.02 -10.86 -0.09 5.32 16 29 O -0.52 -7.45 17.59 5.56 0.10 -7.35 16 30 H 0.06 0.23 8.14 -51.93 -0.42 -0.20 16 31 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 33 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.08 0.62 7.93 -51.93 -0.41 0.21 16 36 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.09 0.71 6.96 -51.93 -0.36 0.35 16 39 H 0.07 0.89 8.08 -51.93 -0.42 0.47 16 40 H 0.07 0.90 8.08 -51.93 -0.42 0.48 16 41 H 0.11 1.63 8.06 -52.48 -0.42 1.21 16 42 H 0.13 2.76 5.64 -52.48 -0.30 2.47 16 43 H 0.28 8.39 7.97 -40.82 -0.33 8.06 16 44 H 0.12 2.23 8.06 -52.49 -0.42 1.80 16 45 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 46 H 0.11 0.94 7.89 -51.93 -0.41 0.53 16 47 H 0.12 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 400.64 15.07 6.04 6.04 Total: -1.00 -32.95 400.64 -8.30 -41.25 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: -6.79 Total: 3.47 kcal Atomic # 6 Polarization: -12.29 SS G_CDS: -2.14 Total: -14.42 kcal Atomic # 7 Polarization: -30.35 SS G_CDS: 0.25 Total: -30.09 kcal Atomic # 8 Polarization: -23.52 SS G_CDS: -0.59 Total: -24.11 kcal Atomic # 14 Polarization: 22.95 SS G_CDS: -5.09 Total: 17.86 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -32.95 -8.30 -41.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840664696.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.442 kcal (2) G-P(sol) polarization free energy of solvation -32.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds