Wall clock time and date at job start Wed Apr 1 2020 04:21:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47408 * 2 1 4 4 N 1.46499 * 109.47376 * 179.97438 * 3 2 1 5 5 C 1.46769 * 124.34737 * 89.99703 * 4 3 2 6 6 C 1.54481 * 105.47057 * 163.00775 * 5 4 3 7 7 H 1.09000 * 110.96738 * 267.25866 * 6 5 4 8 8 C 1.50700 * 110.96763 * 143.53491 * 6 5 4 9 9 O 1.20827 * 120.00234 * 359.97438 * 8 6 5 10 10 O 1.34232 * 119.99675 * 179.97438 * 8 6 5 11 11 C 1.45200 * 116.99840 * 179.97438 * 10 8 6 12 12 C 1.50694 * 109.47178 * 180.02562 * 11 10 8 13 13 C 1.38299 * 119.93328 * 89.99984 * 12 11 10 14 14 C 1.38095 * 120.07276 * 180.02562 * 13 12 11 15 15 C 1.38880 * 119.93329 * 359.97438 * 14 13 12 16 16 O 1.35747 * 120.07665 * 180.02562 * 15 14 13 17 17 C 1.34831 * 116.99293 * 5.53682 * 16 15 14 18 18 H 1.07999 * 120.00441 * 354.93841 * 17 16 15 19 19 C 1.38659 * 119.99500 * 174.94595 * 17 16 15 20 20 N 1.31553 * 120.00475 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99843 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46999 * 180.02562 * 21 19 17 23 23 H 1.48500 * 109.47351 * 299.99979 * 21 19 17 24 24 H 1.48500 * 109.47284 * 59.99648 * 21 19 17 25 25 C 1.38884 * 119.85707 * 0.27286 * 15 14 13 26 26 C 1.38102 * 119.93124 * 359.49665 * 25 15 14 27 27 C 1.54629 * 101.76651 * 25.41472 * 6 5 4 28 28 C 1.34415 * 124.35083 * 270.02579 * 4 3 2 29 29 O 1.21280 * 124.93970 * 0.37738 * 28 4 3 30 30 H 1.08993 * 109.46916 * 59.99853 * 1 2 3 31 31 H 1.08995 * 109.47013 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46533 * 300.00270 * 1 2 3 33 33 H 1.08994 * 109.46861 * 239.99391 * 2 1 3 34 34 H 1.09005 * 109.46821 * 119.99709 * 2 1 3 35 35 H 1.09005 * 109.47219 * 59.99586 * 3 2 1 36 36 H 1.09001 * 109.46773 * 300.00421 * 3 2 1 37 37 H 1.08993 * 110.24434 * 44.00731 * 5 4 3 38 38 H 1.08997 * 110.31956 * 282.04490 * 5 4 3 39 39 H 1.09004 * 109.47176 * 59.99566 * 11 10 8 40 40 H 1.09003 * 109.47281 * 300.00610 * 11 10 8 41 41 H 1.08003 * 119.96363 * 0.02562 * 13 12 11 42 42 H 1.08008 * 120.03520 * 179.97438 * 14 13 12 43 43 H 0.97006 * 119.99673 * 0.02562 * 20 19 17 44 44 H 1.07995 * 120.03547 * 179.72775 * 25 15 14 45 45 H 1.07994 * 119.96787 * 180.23478 * 26 25 15 46 46 H 1.09006 * 110.48480 * 93.87800 * 27 6 5 47 47 H 1.08994 * 110.48624 * 216.52492 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.3337 1.4422 -1.2108 6 6 5.7416 1.8774 -0.7472 7 1 5.8680 2.9557 -0.8438 8 6 6.8122 1.1410 -1.5104 9 8 6.5051 0.3339 -2.3555 10 8 8.1071 1.3819 -1.2514 11 6 9.0839 0.6358 -2.0245 12 6 10.4730 1.0353 -1.5984 13 6 11.1039 0.3525 -0.5745 14 6 12.3767 0.7165 -0.1813 15 6 13.0235 1.7692 -0.8157 16 8 14.2749 2.1291 -0.4319 17 6 14.8787 1.3536 0.4910 18 1 14.3375 0.5395 0.9501 19 6 16.1947 1.6014 0.8509 20 7 16.8541 2.5928 0.2915 21 14 17.0312 0.5274 2.1301 22 1 18.4250 0.9969 2.3356 23 1 16.2865 0.6131 3.4120 24 1 17.0469 -0.8812 1.6601 25 6 12.3853 2.4562 -1.8401 26 6 11.1143 2.0843 -2.2319 27 6 5.7296 1.4518 0.7393 28 6 4.2631 1.4421 1.1107 29 8 3.8337 1.4352 2.2449 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3632 0.5139 0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 1.8934 -0.5138 0.8901 35 1 1.6767 1.9563 0.8900 36 1 1.6767 1.9563 -0.8900 37 1 3.9395 2.1525 -1.9375 38 1 4.3713 0.4425 -1.6434 39 1 8.9516 0.8538 -3.0843 40 1 8.9444 -0.4316 -1.8530 41 1 10.6006 -0.4662 -0.0818 42 1 12.8687 0.1832 0.6187 43 1 16.4196 3.1507 -0.3725 44 1 12.8838 3.2780 -2.3324 45 1 10.6189 2.6156 -3.0310 46 1 6.1588 0.4564 0.8546 47 1 6.2724 2.1752 1.3476 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000840664696.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:21:24 Heat of formation + Delta-G solvation = -151.442176 kcal Electronic energy + Delta-G solvation = -28980.026626 eV Core-core repulsion = 24706.486975 eV Total energy + Delta-G solvation = -4273.539651 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.15648 -41.12944 -40.77658 -38.74203 -37.77605 -37.24718 -35.85993 -34.41533 -32.77790 -32.01807 -31.86010 -28.94410 -27.84526 -27.24882 -26.45535 -24.59117 -23.68785 -22.75338 -22.35753 -21.60098 -20.49731 -20.30687 -19.01273 -18.83374 -18.06096 -17.89903 -17.35525 -17.02662 -16.74714 -16.43333 -15.85377 -15.69920 -15.64395 -15.61516 -15.18033 -15.16558 -14.89454 -14.67338 -14.64953 -14.27008 -14.03819 -13.83406 -13.68890 -13.11359 -13.06540 -12.94737 -12.78946 -12.66516 -12.62335 -12.45814 -12.34086 -12.23213 -12.11248 -11.93824 -11.69928 -11.67662 -11.62822 -11.30120 -10.99263 -10.77804 -9.90509 -9.82415 -9.15213 -8.95727 -6.26960 0.36083 0.48922 1.05847 1.40567 1.49541 1.54950 1.64247 1.78911 1.99447 2.34432 2.78949 3.05861 3.11402 3.24426 3.29224 3.64445 3.72134 3.84992 3.87990 3.97343 4.01151 4.03992 4.09769 4.26570 4.31545 4.42054 4.44032 4.49307 4.51453 4.56308 4.65111 4.68760 4.74354 4.81218 4.88765 4.90360 5.13377 5.15038 5.15853 5.18923 5.30434 5.36746 5.47390 5.51711 5.61493 5.68011 5.96422 5.97652 6.24323 6.64220 6.83280 7.00029 7.57698 8.48592 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.020648 B = 0.001709 C = 0.001633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.750502 B =16378.003888 C =17138.066019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.140 4.140 3 C 0.122 3.878 4 N -0.614 5.614 5 C 0.116 3.884 6 C -0.088 4.088 7 H 0.158 0.842 8 C 0.479 3.521 9 O -0.525 6.525 10 O -0.352 6.352 11 C 0.130 3.870 12 C -0.178 4.178 13 C -0.043 4.043 14 C -0.245 4.245 15 C 0.126 3.874 16 O -0.248 6.248 17 C -0.489 4.489 18 H 0.094 0.906 19 C -0.042 4.042 20 N -0.914 5.914 21 Si 1.143 2.857 22 H -0.274 1.274 23 H -0.260 1.260 24 H -0.260 1.260 25 C -0.206 4.206 26 C -0.039 4.039 27 C -0.140 4.140 28 C 0.514 3.486 29 O -0.573 6.573 30 H 0.072 0.928 31 H 0.059 0.941 32 H 0.054 0.946 33 H 0.070 0.930 34 H 0.040 0.960 35 H 0.072 0.928 36 H 0.111 0.889 37 H 0.120 0.880 38 H 0.086 0.914 39 H 0.091 0.909 40 H 0.084 0.916 41 H 0.142 0.858 42 H 0.120 0.880 43 H 0.261 0.739 44 H 0.121 0.879 45 H 0.156 0.844 46 H 0.109 0.891 47 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.564 -3.337 -5.492 31.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.178 4.178 3 C 0.001 3.999 4 N -0.347 5.347 5 C -0.006 4.006 6 C -0.107 4.107 7 H 0.176 0.824 8 C 0.322 3.678 9 O -0.414 6.414 10 O -0.269 6.269 11 C 0.057 3.943 12 C -0.178 4.178 13 C -0.061 4.061 14 C -0.264 4.264 15 C 0.076 3.924 16 O -0.155 6.155 17 C -0.565 4.565 18 H 0.111 0.889 19 C -0.238 4.238 20 N -0.549 5.549 21 Si 0.959 3.041 22 H -0.199 1.199 23 H -0.185 1.185 24 H -0.184 1.184 25 C -0.225 4.225 26 C -0.057 4.057 27 C -0.180 4.180 28 C 0.302 3.698 29 O -0.452 6.452 30 H 0.091 0.909 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.089 0.911 34 H 0.059 0.941 35 H 0.090 0.910 36 H 0.130 0.870 37 H 0.138 0.862 38 H 0.104 0.896 39 H 0.110 0.890 40 H 0.102 0.898 41 H 0.160 0.840 42 H 0.138 0.862 43 H 0.070 0.930 44 H 0.139 0.861 45 H 0.173 0.827 46 H 0.127 0.873 47 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -29.349 -3.623 -4.445 29.904 hybrid contribution -0.876 0.213 -0.810 1.212 sum -30.224 -3.410 -5.255 30.867 Atomic orbital electron populations 1.21672 0.93601 1.02481 1.02646 1.21881 0.97481 0.96741 1.01726 1.21657 0.76476 0.97489 1.04310 1.48454 1.07148 1.72216 1.06864 1.22158 0.86922 1.04614 0.86940 1.21948 0.91126 1.03815 0.93814 0.82443 1.23375 0.83360 0.80152 0.80923 1.90682 1.83220 1.34239 1.33268 1.86619 1.16056 1.62943 1.61240 1.21698 0.81973 0.95483 0.95100 1.19301 0.95685 1.01156 1.01695 1.20990 0.92598 0.98207 0.94349 1.21267 0.98042 1.01853 1.05238 1.19916 0.85263 0.93766 0.93488 1.83649 1.25771 1.50939 1.55103 1.22609 0.99124 1.15035 1.19718 0.88902 1.28359 0.92744 0.99922 1.02815 1.70717 1.39755 1.17735 1.26659 0.82600 0.75541 0.73555 0.72395 1.19876 1.18481 1.18439 1.20480 0.97743 1.04294 1.00015 1.20951 0.92097 0.94463 0.98203 1.22310 0.94178 1.06240 0.95251 1.21099 0.89850 0.74565 0.84260 1.90723 1.79253 1.52388 1.22885 0.90906 0.92229 0.92705 0.91147 0.94113 0.90962 0.87043 0.86160 0.89576 0.89035 0.89787 0.83983 0.86198 0.93037 0.86139 0.82683 0.87263 0.85575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.91 71.98 0.71 -0.48 16 2 C -0.14 -1.60 6.26 30.60 0.19 -1.41 16 3 C 0.12 1.32 5.93 86.38 0.51 1.83 16 4 N -0.61 -8.33 2.93 -817.99 -2.40 -10.73 16 5 C 0.12 1.10 6.71 86.83 0.58 1.68 16 6 C -0.09 -0.96 3.66 -10.48 -0.04 -1.00 16 7 H 0.16 0.95 8.14 -2.39 -0.02 0.93 16 8 C 0.48 8.14 7.19 71.24 0.51 8.65 16 9 O -0.52 -11.08 15.25 21.96 0.33 -10.74 16 10 O -0.35 -7.25 10.20 -51.44 -0.52 -7.78 16 11 C 0.13 2.81 5.59 71.23 0.40 3.20 16 12 C -0.18 -5.07 5.52 -19.84 -0.11 -5.18 16 13 C -0.04 -1.40 9.69 22.25 0.22 -1.19 16 14 C -0.24 -10.25 9.17 22.39 0.21 -10.05 16 15 C 0.13 6.00 6.65 22.58 0.15 6.15 16 16 O -0.25 -14.33 9.16 -22.73 -0.21 -14.54 16 17 C -0.49 -28.02 9.49 67.92 0.64 -27.37 16 18 H 0.09 4.93 5.20 -2.91 -0.02 4.92 16 19 C -0.04 -2.35 5.49 84.84 0.47 -1.89 16 20 N -0.91 -56.33 13.70 21.61 0.30 -56.04 16 21 Si 1.14 47.23 29.92 68.60 2.05 49.28 16 22 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 23 H -0.26 -9.77 7.11 99.48 0.71 -9.06 16 24 H -0.26 -9.72 7.11 99.48 0.71 -9.02 16 25 C -0.21 -8.11 9.99 22.39 0.22 -7.89 16 26 C -0.04 -1.18 9.69 22.25 0.22 -0.97 16 27 C -0.14 -2.00 6.41 30.59 0.20 -1.81 16 28 C 0.51 10.00 8.02 87.90 0.71 10.71 16 29 O -0.57 -16.36 17.59 -3.03 -0.05 -16.41 16 30 H 0.07 0.38 8.14 -2.39 -0.02 0.36 16 31 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.05 0.48 8.14 -2.38 -0.02 0.46 16 33 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.04 0.68 8.14 -2.38 -0.02 0.66 16 35 H 0.07 0.99 7.93 -2.38 -0.02 0.97 16 36 H 0.11 0.54 8.14 -2.39 -0.02 0.53 16 37 H 0.12 0.49 8.14 -2.39 -0.02 0.47 16 38 H 0.09 1.01 6.96 -2.39 -0.02 1.00 16 39 H 0.09 1.72 8.08 -2.39 -0.02 1.70 16 40 H 0.08 1.68 8.08 -2.39 -0.02 1.67 16 41 H 0.14 3.68 8.06 -2.91 -0.02 3.66 16 42 H 0.12 5.20 5.64 -2.91 -0.02 5.18 16 43 H 0.26 16.73 7.97 -92.70 -0.74 15.99 16 44 H 0.12 4.59 8.06 -2.91 -0.02 4.57 16 45 H 0.16 3.44 8.06 -2.91 -0.02 3.42 16 46 H 0.11 1.62 7.89 -2.38 -0.02 1.60 16 47 H 0.13 1.66 8.14 -2.39 -0.02 1.64 16 Total: -1.00 -77.98 400.64 6.29 -71.68 By element: Atomic # 1 Polarization: 21.25 SS G_CDS: 1.01 Total: 22.26 kcal Atomic # 6 Polarization: -32.78 SS G_CDS: 5.78 Total: -27.00 kcal Atomic # 7 Polarization: -64.66 SS G_CDS: -2.10 Total: -66.76 kcal Atomic # 8 Polarization: -49.01 SS G_CDS: -0.45 Total: -49.47 kcal Atomic # 14 Polarization: 47.23 SS G_CDS: 2.05 Total: 49.28 kcal Total: -77.98 6.29 -71.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840664696.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.759 kcal (2) G-P(sol) polarization free energy of solvation -77.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds