Wall clock time and date at job start Wed Apr 1 2020 04:21:24
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 C 1.52997 * 109.47408 * 2 1
4 4 N 1.46499 * 109.47376 * 179.97438 * 3 2 1
5 5 C 1.46769 * 124.34737 * 89.99703 * 4 3 2
6 6 C 1.54481 * 105.47057 * 163.00775 * 5 4 3
7 7 H 1.09000 * 110.96738 * 267.25866 * 6 5 4
8 8 C 1.50700 * 110.96763 * 143.53491 * 6 5 4
9 9 O 1.20827 * 120.00234 * 359.97438 * 8 6 5
10 10 O 1.34232 * 119.99675 * 179.97438 * 8 6 5
11 11 C 1.45200 * 116.99840 * 179.97438 * 10 8 6
12 12 C 1.50694 * 109.47178 * 180.02562 * 11 10 8
13 13 C 1.38299 * 119.93328 * 89.99984 * 12 11 10
14 14 C 1.38095 * 120.07276 * 180.02562 * 13 12 11
15 15 C 1.38880 * 119.93329 * 359.97438 * 14 13 12
16 16 O 1.35747 * 120.07665 * 180.02562 * 15 14 13
17 17 C 1.34831 * 116.99293 * 5.53682 * 16 15 14
18 18 H 1.07999 * 120.00441 * 354.93841 * 17 16 15
19 19 C 1.38659 * 119.99500 * 174.94595 * 17 16 15
20 20 N 1.31553 * 120.00475 * 359.97438 * 19 17 16
21 21 Si 1.86803 * 119.99843 * 179.97438 * 19 17 16
22 22 H 1.48500 * 109.46999 * 180.02562 * 21 19 17
23 23 H 1.48500 * 109.47351 * 299.99979 * 21 19 17
24 24 H 1.48500 * 109.47284 * 59.99648 * 21 19 17
25 25 C 1.38884 * 119.85707 * 0.27286 * 15 14 13
26 26 C 1.38102 * 119.93124 * 359.49665 * 25 15 14
27 27 C 1.54629 * 101.76651 * 25.41472 * 6 5 4
28 28 C 1.34415 * 124.35083 * 270.02579 * 4 3 2
29 29 O 1.21280 * 124.93970 * 0.37738 * 28 4 3
30 30 H 1.08993 * 109.46916 * 59.99853 * 1 2 3
31 31 H 1.08995 * 109.47013 * 180.02562 * 1 2 3
32 32 H 1.09005 * 109.46533 * 300.00270 * 1 2 3
33 33 H 1.08994 * 109.46861 * 239.99391 * 2 1 3
34 34 H 1.09005 * 109.46821 * 119.99709 * 2 1 3
35 35 H 1.09005 * 109.47219 * 59.99586 * 3 2 1
36 36 H 1.09001 * 109.46773 * 300.00421 * 3 2 1
37 37 H 1.08993 * 110.24434 * 44.00731 * 5 4 3
38 38 H 1.08997 * 110.31956 * 282.04490 * 5 4 3
39 39 H 1.09004 * 109.47176 * 59.99566 * 11 10 8
40 40 H 1.09003 * 109.47281 * 300.00610 * 11 10 8
41 41 H 1.08003 * 119.96363 * 0.02562 * 13 12 11
42 42 H 1.08008 * 120.03520 * 179.97438 * 14 13 12
43 43 H 0.97006 * 119.99673 * 0.02562 * 20 19 17
44 44 H 1.07995 * 120.03547 * 179.72775 * 25 15 14
45 45 H 1.07994 * 119.96787 * 180.23478 * 26 25 15
46 46 H 1.09006 * 110.48480 * 93.87800 * 27 6 5
47 47 H 1.08994 * 110.48624 * 216.52492 * 27 6 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0401 1.4424 0.0000
4 7 3.5051 1.4424 0.0006
5 6 4.3337 1.4422 -1.2108
6 6 5.7416 1.8774 -0.7472
7 1 5.8680 2.9557 -0.8438
8 6 6.8122 1.1410 -1.5104
9 8 6.5051 0.3339 -2.3555
10 8 8.1071 1.3819 -1.2514
11 6 9.0839 0.6358 -2.0245
12 6 10.4730 1.0353 -1.5984
13 6 11.1039 0.3525 -0.5745
14 6 12.3767 0.7165 -0.1813
15 6 13.0235 1.7692 -0.8157
16 8 14.2749 2.1291 -0.4319
17 6 14.8787 1.3536 0.4910
18 1 14.3375 0.5395 0.9501
19 6 16.1947 1.6014 0.8509
20 7 16.8541 2.5928 0.2915
21 14 17.0312 0.5274 2.1301
22 1 18.4250 0.9969 2.3356
23 1 16.2865 0.6131 3.4120
24 1 17.0469 -0.8812 1.6601
25 6 12.3853 2.4562 -1.8401
26 6 11.1143 2.0843 -2.2319
27 6 5.7296 1.4518 0.7393
28 6 4.2631 1.4421 1.1107
29 8 3.8337 1.4352 2.2449
30 1 -0.3633 0.5138 -0.8899
31 1 -0.3633 -1.0276 0.0005
32 1 -0.3632 0.5139 0.8900
33 1 1.8933 -0.5139 -0.8899
34 1 1.8934 -0.5138 0.8901
35 1 1.6767 1.9563 0.8900
36 1 1.6767 1.9563 -0.8900
37 1 3.9395 2.1525 -1.9375
38 1 4.3713 0.4425 -1.6434
39 1 8.9516 0.8538 -3.0843
40 1 8.9444 -0.4316 -1.8530
41 1 10.6006 -0.4662 -0.0818
42 1 12.8687 0.1832 0.6187
43 1 16.4196 3.1507 -0.3725
44 1 12.8838 3.2780 -2.3324
45 1 10.6189 2.6156 -3.0310
46 1 6.1588 0.4564 0.8546
47 1 6.2724 2.1752 1.3476
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000840664696.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:21:24
Heat of formation + Delta-G solvation = -151.442176 kcal
Electronic energy + Delta-G solvation = -28980.026626 eV
Core-core repulsion = 24706.486975 eV
Total energy + Delta-G solvation = -4273.539651 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 347.161 amu
Computer time = 0.85 seconds
Orbital eigenvalues (eV)
-42.15648 -41.12944 -40.77658 -38.74203 -37.77605 -37.24718 -35.85993 -34.41533
-32.77790 -32.01807 -31.86010 -28.94410 -27.84526 -27.24882 -26.45535 -24.59117
-23.68785 -22.75338 -22.35753 -21.60098 -20.49731 -20.30687 -19.01273 -18.83374
-18.06096 -17.89903 -17.35525 -17.02662 -16.74714 -16.43333 -15.85377 -15.69920
-15.64395 -15.61516 -15.18033 -15.16558 -14.89454 -14.67338 -14.64953 -14.27008
-14.03819 -13.83406 -13.68890 -13.11359 -13.06540 -12.94737 -12.78946 -12.66516
-12.62335 -12.45814 -12.34086 -12.23213 -12.11248 -11.93824 -11.69928 -11.67662
-11.62822 -11.30120 -10.99263 -10.77804 -9.90509 -9.82415 -9.15213 -8.95727
-6.26960 0.36083 0.48922 1.05847 1.40567 1.49541 1.54950 1.64247
1.78911 1.99447 2.34432 2.78949 3.05861 3.11402 3.24426 3.29224
3.64445 3.72134 3.84992 3.87990 3.97343 4.01151 4.03992 4.09769
4.26570 4.31545 4.42054 4.44032 4.49307 4.51453 4.56308 4.65111
4.68760 4.74354 4.81218 4.88765 4.90360 5.13377 5.15038 5.15853
5.18923 5.30434 5.36746 5.47390 5.51711 5.61493 5.68011 5.96422
5.97652 6.24323 6.64220 6.83280 7.00029 7.57698 8.48592
Molecular weight = 347.16amu
Principal moments of inertia in cm(-1)
A = 0.020648 B = 0.001709 C = 0.001633
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1355.750502 B =16378.003888 C =17138.066019
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.146 4.146
2 C -0.140 4.140
3 C 0.122 3.878
4 N -0.614 5.614
5 C 0.116 3.884
6 C -0.088 4.088
7 H 0.158 0.842
8 C 0.479 3.521
9 O -0.525 6.525
10 O -0.352 6.352
11 C 0.130 3.870
12 C -0.178 4.178
13 C -0.043 4.043
14 C -0.245 4.245
15 C 0.126 3.874
16 O -0.248 6.248
17 C -0.489 4.489
18 H 0.094 0.906
19 C -0.042 4.042
20 N -0.914 5.914
21 Si 1.143 2.857
22 H -0.274 1.274
23 H -0.260 1.260
24 H -0.260 1.260
25 C -0.206 4.206
26 C -0.039 4.039
27 C -0.140 4.140
28 C 0.514 3.486
29 O -0.573 6.573
30 H 0.072 0.928
31 H 0.059 0.941
32 H 0.054 0.946
33 H 0.070 0.930
34 H 0.040 0.960
35 H 0.072 0.928
36 H 0.111 0.889
37 H 0.120 0.880
38 H 0.086 0.914
39 H 0.091 0.909
40 H 0.084 0.916
41 H 0.142 0.858
42 H 0.120 0.880
43 H 0.261 0.739
44 H 0.121 0.879
45 H 0.156 0.844
46 H 0.109 0.891
47 H 0.126 0.874
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -30.564 -3.337 -5.492 31.232
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.204 4.204
2 C -0.178 4.178
3 C 0.001 3.999
4 N -0.347 5.347
5 C -0.006 4.006
6 C -0.107 4.107
7 H 0.176 0.824
8 C 0.322 3.678
9 O -0.414 6.414
10 O -0.269 6.269
11 C 0.057 3.943
12 C -0.178 4.178
13 C -0.061 4.061
14 C -0.264 4.264
15 C 0.076 3.924
16 O -0.155 6.155
17 C -0.565 4.565
18 H 0.111 0.889
19 C -0.238 4.238
20 N -0.549 5.549
21 Si 0.959 3.041
22 H -0.199 1.199
23 H -0.185 1.185
24 H -0.184 1.184
25 C -0.225 4.225
26 C -0.057 4.057
27 C -0.180 4.180
28 C 0.302 3.698
29 O -0.452 6.452
30 H 0.091 0.909
31 H 0.078 0.922
32 H 0.073 0.927
33 H 0.089 0.911
34 H 0.059 0.941
35 H 0.090 0.910
36 H 0.130 0.870
37 H 0.138 0.862
38 H 0.104 0.896
39 H 0.110 0.890
40 H 0.102 0.898
41 H 0.160 0.840
42 H 0.138 0.862
43 H 0.070 0.930
44 H 0.139 0.861
45 H 0.173 0.827
46 H 0.127 0.873
47 H 0.144 0.856
Dipole moment (debyes) X Y Z Total
from point charges -29.349 -3.623 -4.445 29.904
hybrid contribution -0.876 0.213 -0.810 1.212
sum -30.224 -3.410 -5.255 30.867
Atomic orbital electron populations
1.21672 0.93601 1.02481 1.02646 1.21881 0.97481 0.96741 1.01726
1.21657 0.76476 0.97489 1.04310 1.48454 1.07148 1.72216 1.06864
1.22158 0.86922 1.04614 0.86940 1.21948 0.91126 1.03815 0.93814
0.82443 1.23375 0.83360 0.80152 0.80923 1.90682 1.83220 1.34239
1.33268 1.86619 1.16056 1.62943 1.61240 1.21698 0.81973 0.95483
0.95100 1.19301 0.95685 1.01156 1.01695 1.20990 0.92598 0.98207
0.94349 1.21267 0.98042 1.01853 1.05238 1.19916 0.85263 0.93766
0.93488 1.83649 1.25771 1.50939 1.55103 1.22609 0.99124 1.15035
1.19718 0.88902 1.28359 0.92744 0.99922 1.02815 1.70717 1.39755
1.17735 1.26659 0.82600 0.75541 0.73555 0.72395 1.19876 1.18481
1.18439 1.20480 0.97743 1.04294 1.00015 1.20951 0.92097 0.94463
0.98203 1.22310 0.94178 1.06240 0.95251 1.21099 0.89850 0.74565
0.84260 1.90723 1.79253 1.52388 1.22885 0.90906 0.92229 0.92705
0.91147 0.94113 0.90962 0.87043 0.86160 0.89576 0.89035 0.89787
0.83983 0.86198 0.93037 0.86139 0.82683 0.87263 0.85575
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.20 9.91 71.98 0.71 -0.48 16
2 C -0.14 -1.60 6.26 30.60 0.19 -1.41 16
3 C 0.12 1.32 5.93 86.38 0.51 1.83 16
4 N -0.61 -8.33 2.93 -817.99 -2.40 -10.73 16
5 C 0.12 1.10 6.71 86.83 0.58 1.68 16
6 C -0.09 -0.96 3.66 -10.48 -0.04 -1.00 16
7 H 0.16 0.95 8.14 -2.39 -0.02 0.93 16
8 C 0.48 8.14 7.19 71.24 0.51 8.65 16
9 O -0.52 -11.08 15.25 21.96 0.33 -10.74 16
10 O -0.35 -7.25 10.20 -51.44 -0.52 -7.78 16
11 C 0.13 2.81 5.59 71.23 0.40 3.20 16
12 C -0.18 -5.07 5.52 -19.84 -0.11 -5.18 16
13 C -0.04 -1.40 9.69 22.25 0.22 -1.19 16
14 C -0.24 -10.25 9.17 22.39 0.21 -10.05 16
15 C 0.13 6.00 6.65 22.58 0.15 6.15 16
16 O -0.25 -14.33 9.16 -22.73 -0.21 -14.54 16
17 C -0.49 -28.02 9.49 67.92 0.64 -27.37 16
18 H 0.09 4.93 5.20 -2.91 -0.02 4.92 16
19 C -0.04 -2.35 5.49 84.84 0.47 -1.89 16
20 N -0.91 -56.33 13.70 21.61 0.30 -56.04 16
21 Si 1.14 47.23 29.92 68.60 2.05 49.28 16
22 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16
23 H -0.26 -9.77 7.11 99.48 0.71 -9.06 16
24 H -0.26 -9.72 7.11 99.48 0.71 -9.02 16
25 C -0.21 -8.11 9.99 22.39 0.22 -7.89 16
26 C -0.04 -1.18 9.69 22.25 0.22 -0.97 16
27 C -0.14 -2.00 6.41 30.59 0.20 -1.81 16
28 C 0.51 10.00 8.02 87.90 0.71 10.71 16
29 O -0.57 -16.36 17.59 -3.03 -0.05 -16.41 16
30 H 0.07 0.38 8.14 -2.39 -0.02 0.36 16
31 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16
32 H 0.05 0.48 8.14 -2.38 -0.02 0.46 16
33 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16
34 H 0.04 0.68 8.14 -2.38 -0.02 0.66 16
35 H 0.07 0.99 7.93 -2.38 -0.02 0.97 16
36 H 0.11 0.54 8.14 -2.39 -0.02 0.53 16
37 H 0.12 0.49 8.14 -2.39 -0.02 0.47 16
38 H 0.09 1.01 6.96 -2.39 -0.02 1.00 16
39 H 0.09 1.72 8.08 -2.39 -0.02 1.70 16
40 H 0.08 1.68 8.08 -2.39 -0.02 1.67 16
41 H 0.14 3.68 8.06 -2.91 -0.02 3.66 16
42 H 0.12 5.20 5.64 -2.91 -0.02 5.18 16
43 H 0.26 16.73 7.97 -92.70 -0.74 15.99 16
44 H 0.12 4.59 8.06 -2.91 -0.02 4.57 16
45 H 0.16 3.44 8.06 -2.91 -0.02 3.42 16
46 H 0.11 1.62 7.89 -2.38 -0.02 1.60 16
47 H 0.13 1.66 8.14 -2.39 -0.02 1.64 16
Total: -1.00 -77.98 400.64 6.29 -71.68
By element:
Atomic # 1 Polarization: 21.25 SS G_CDS: 1.01 Total: 22.26 kcal
Atomic # 6 Polarization: -32.78 SS G_CDS: 5.78 Total: -27.00 kcal
Atomic # 7 Polarization: -64.66 SS G_CDS: -2.10 Total: -66.76 kcal
Atomic # 8 Polarization: -49.01 SS G_CDS: -0.45 Total: -49.47 kcal
Atomic # 14 Polarization: 47.23 SS G_CDS: 2.05 Total: 49.28 kcal
Total: -77.98 6.29 -71.68 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000840664696.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -79.759 kcal
(2) G-P(sol) polarization free energy of solvation -77.977 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.737 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.294 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.683 kcal
(6) G-S(sol) free energy of system = (1) + (5) -151.442 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.85 seconds