Wall clock time and date at job start Wed Apr 1 2020 04:12:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53008 * 109.47183 * 2 1 4 4 C 1.50693 * 109.47120 * 179.97438 * 3 2 1 5 5 O 1.21279 * 120.00175 * 0.02562 * 4 3 2 6 6 N 1.34778 * 120.00281 * 179.97438 * 4 3 2 7 7 C 1.47533 * 125.63194 * 0.05057 * 6 4 3 8 8 C 1.54902 * 104.78222 * 155.84224 * 7 6 4 9 9 C 1.55147 * 101.62053 * 37.00116 * 8 7 6 10 10 C 1.47019 * 125.65321 * 179.97438 * 6 4 3 11 11 H 1.09003 * 109.88425 * 300.51819 * 10 6 4 12 12 C 1.50705 * 109.88164 * 61.68201 * 10 6 4 13 13 O 1.20830 * 119.99417 * 359.26019 * 12 10 6 14 14 O 1.34265 * 119.99915 * 179.26494 * 12 10 6 15 15 C 1.35919 * 116.99558 * 175.00908 * 14 12 10 16 16 C 1.38821 * 120.02213 * 255.01471 * 15 14 12 17 17 C 1.38194 * 120.08204 * 179.79516 * 16 15 14 18 18 C 1.38156 * 120.12275 * 0.46246 * 17 16 15 19 19 C 1.38896 * 120.04043 * 359.79357 * 18 17 16 20 20 O 1.35748 * 120.04085 * 179.97438 * 19 18 17 21 21 C 1.34824 * 117.00294 * 185.57127 * 20 19 18 22 22 H 1.08001 * 120.00128 * 354.94272 * 21 20 19 23 23 C 1.38654 * 120.00458 * 174.93421 * 21 20 19 24 24 N 1.31564 * 119.99439 * 0.02562 * 23 21 20 25 25 Si 1.86796 * 120.00428 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.46822 * 0.02562 * 25 23 21 27 27 H 1.48497 * 109.47487 * 120.00046 * 25 23 21 28 28 H 1.48500 * 109.47204 * 240.00336 * 25 23 21 29 29 C 1.38579 * 120.02181 * 75.29676 * 15 14 12 30 30 H 1.09006 * 109.47407 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47188 * 299.99684 * 1 2 3 32 32 H 1.08997 * 109.47448 * 59.99532 * 1 2 3 33 33 H 1.09005 * 109.47188 * 240.00316 * 2 1 3 34 34 H 1.08997 * 109.47448 * 120.00468 * 2 1 3 35 35 H 1.09000 * 109.46409 * 60.00276 * 3 2 1 36 36 H 1.08993 * 109.46899 * 300.00315 * 3 2 1 37 37 H 1.08998 * 110.41310 * 37.00284 * 7 6 4 38 38 H 1.09007 * 110.36722 * 274.64896 * 7 6 4 39 39 H 1.09004 * 111.00469 * 278.90663 * 8 7 6 40 40 H 1.08998 * 111.00720 * 155.09637 * 8 7 6 41 41 H 1.09002 * 110.72014 * 82.84222 * 9 8 7 42 42 H 1.09004 * 110.72305 * 206.11842 * 9 8 7 43 43 H 1.07994 * 119.95692 * 0.02694 * 16 15 14 44 44 H 1.08001 * 119.93910 * 180.25901 * 17 16 15 45 45 H 1.07997 * 119.97740 * 179.76772 * 18 17 16 46 46 H 0.96998 * 119.99349 * 179.97438 * 24 23 21 47 47 H 1.08007 * 120.06059 * 359.94941 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5469 1.4425 0.0006 5 8 4.1533 0.3923 0.0006 6 7 4.2209 2.6097 0.0002 7 6 3.6122 3.9536 0.0002 8 6 4.6943 4.8775 0.6127 9 6 5.9948 4.2658 0.0282 10 6 5.6839 2.7545 0.0013 11 1 6.1034 2.2737 0.8851 12 6 6.2611 2.1349 -1.2454 13 8 5.5313 1.6096 -2.0524 14 8 7.5863 2.1665 -1.4591 15 6 8.0516 1.5000 -2.5483 16 6 8.7058 0.2855 -2.3924 17 6 9.1758 -0.3953 -3.4994 18 6 9.0046 0.1349 -4.7637 19 6 8.3555 1.3522 -4.9252 20 8 8.1877 1.8734 -6.1673 21 6 7.6541 3.1090 -6.2458 22 1 7.3062 3.6048 -5.3516 23 6 7.5522 3.7435 -7.4744 24 7 7.9758 3.1395 -8.5638 25 14 6.8135 5.4558 -7.5831 26 1 6.4176 5.9110 -6.2261 27 1 7.8182 6.3935 -8.1456 28 1 5.6182 5.4243 -8.4636 29 6 7.8786 2.0351 -3.8149 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 1.6766 1.9563 0.8900 36 1 1.6766 1.9563 -0.8899 37 1 2.7124 3.9635 0.6153 38 1 3.3799 4.2649 -1.0183 39 1 4.6890 4.8174 1.7010 40 1 4.5629 5.9071 0.2798 41 1 6.1783 4.6401 -0.9789 42 1 6.8446 4.4730 0.6786 43 1 8.8444 -0.1295 -1.4051 44 1 9.6807 -1.3419 -3.3757 45 1 9.3761 -0.3973 -5.6268 46 1 7.9041 3.5832 -9.4233 47 1 7.3731 2.9817 -3.9378 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000841342635.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:12:39 Heat of formation + Delta-G solvation = -111.639213 kcal Electronic energy + Delta-G solvation = -30881.085856 eV Core-core repulsion = 26609.272191 eV Total energy + Delta-G solvation = -4271.813665 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.22264 -40.03232 -38.70847 -37.74980 -36.72942 -35.66316 -34.54386 -32.30891 -32.06571 -30.55904 -29.46012 -28.83046 -27.98955 -25.46148 -24.69209 -23.21893 -22.03928 -21.84236 -21.42124 -20.50453 -19.23421 -18.31905 -17.95740 -17.40898 -17.31983 -16.13230 -16.05440 -15.94268 -15.53522 -15.10720 -14.80665 -14.32563 -14.31625 -14.17267 -13.71548 -13.70931 -13.62546 -13.47138 -13.15508 -12.99534 -12.71693 -12.62544 -12.20631 -12.05682 -11.91907 -11.83060 -11.70976 -11.49920 -11.33275 -11.29474 -11.24987 -11.04763 -10.92512 -10.83943 -10.48648 -10.30026 -10.24969 -9.93891 -9.52714 -8.99140 -8.87149 -8.12785 -7.32854 -6.48149 -4.07331 1.74931 2.23720 2.35409 2.47165 2.67537 3.09076 3.10418 3.16577 3.23630 3.93586 4.03595 4.12088 4.46871 4.49053 4.57967 4.67346 4.79478 4.82035 4.88431 5.03726 5.04982 5.15474 5.23344 5.23806 5.27656 5.37613 5.40824 5.46811 5.51174 5.53708 5.62900 5.75787 5.81566 5.82695 5.90362 5.96448 6.02587 6.15116 6.18969 6.34733 6.58609 6.92914 7.02961 7.11322 7.16624 7.24021 7.34114 7.62631 7.95751 8.03509 8.21996 8.96948 9.64452 10.69672 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.009244 B = 0.003228 C = 0.002984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3028.201222 B = 8673.080242 C = 9382.605100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.111 4.111 3 C -0.131 4.131 4 C 0.534 3.466 5 O -0.521 6.521 6 N -0.610 5.610 7 C 0.097 3.903 8 C -0.131 4.131 9 C -0.121 4.121 10 C 0.152 3.848 11 H 0.114 0.886 12 C 0.442 3.558 13 O -0.464 6.464 14 O -0.297 6.297 15 C 0.122 3.878 16 C -0.209 4.209 17 C -0.065 4.065 18 C -0.187 4.187 19 C 0.164 3.836 20 O -0.172 6.172 21 C -0.392 4.392 22 H 0.090 0.910 23 C 0.040 3.960 24 N -0.860 5.860 25 Si 0.941 3.059 26 H -0.267 1.267 27 H -0.274 1.274 28 H -0.275 1.275 29 C -0.229 4.229 30 H 0.057 0.943 31 H 0.053 0.947 32 H 0.055 0.945 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.091 0.909 36 H 0.094 0.906 37 H 0.085 0.915 38 H 0.074 0.926 39 H 0.082 0.918 40 H 0.092 0.908 41 H 0.087 0.913 42 H 0.100 0.900 43 H 0.114 0.886 44 H 0.122 0.878 45 H 0.123 0.877 46 H 0.270 0.730 47 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.318 3.720 21.066 23.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.149 4.149 3 C -0.171 4.171 4 C 0.323 3.677 5 O -0.396 6.396 6 N -0.347 5.347 7 C -0.025 4.025 8 C -0.169 4.169 9 C -0.159 4.159 10 C 0.046 3.954 11 H 0.131 0.869 12 C 0.282 3.718 13 O -0.346 6.346 14 O -0.212 6.212 15 C 0.081 3.919 16 C -0.228 4.228 17 C -0.083 4.083 18 C -0.206 4.206 19 C 0.110 3.890 20 O -0.075 6.075 21 C -0.468 4.468 22 H 0.108 0.892 23 C -0.164 4.164 24 N -0.495 5.495 25 Si 0.766 3.234 26 H -0.192 1.192 27 H -0.200 1.200 28 H -0.200 1.200 29 C -0.249 4.249 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.091 0.909 34 H 0.087 0.913 35 H 0.110 0.890 36 H 0.112 0.888 37 H 0.103 0.897 38 H 0.093 0.907 39 H 0.101 0.899 40 H 0.110 0.890 41 H 0.105 0.895 42 H 0.119 0.881 43 H 0.132 0.868 44 H 0.140 0.860 45 H 0.141 0.859 46 H 0.080 0.920 47 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -10.234 2.850 20.283 22.896 hybrid contribution -0.354 0.917 -0.242 1.012 sum -10.587 3.767 20.040 22.976 Atomic orbital electron populations 1.21782 0.95391 1.02013 1.01691 1.21306 0.95279 0.94562 1.03795 1.21679 0.90844 1.00391 1.04212 1.20501 0.90211 0.81867 0.75096 1.90739 1.70288 1.30421 1.48104 1.48442 1.04681 1.06726 1.74835 1.22453 0.96996 0.81334 1.01752 1.22819 0.93474 0.99495 1.01134 1.22658 0.99230 0.90157 1.03896 1.21043 0.82305 0.97880 0.94172 0.86855 1.24181 0.81065 0.78209 0.88324 1.90730 1.59763 1.39271 1.44841 1.84482 1.24638 1.67192 1.44860 1.18201 0.97535 0.91964 0.84176 1.20522 1.08370 0.94952 0.98946 1.20492 0.98252 0.98356 0.91222 1.20331 1.06004 0.96683 0.97581 1.19112 0.92119 0.92428 0.85389 1.83996 1.70572 1.31587 1.21326 1.21343 1.39879 0.90197 0.95349 0.89247 1.25288 0.97099 0.99849 0.94168 1.70050 1.43230 1.37665 0.98529 0.85645 0.78678 0.80253 0.78839 1.19171 1.19980 1.20031 1.21168 1.08984 1.03536 0.91193 0.92345 0.92798 0.92596 0.90934 0.91278 0.89041 0.88751 0.89718 0.90736 0.89914 0.88954 0.89455 0.88139 0.86757 0.85965 0.85864 0.91983 0.85216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.91 37.15 0.37 -0.78 16 2 C -0.11 -1.14 5.22 -26.73 -0.14 -1.28 16 3 C -0.13 -1.26 4.71 -27.88 -0.13 -1.39 16 4 C 0.53 7.41 7.01 -10.99 -0.08 7.34 16 5 O -0.52 -9.60 15.24 -8.86 -0.14 -9.73 16 6 N -0.61 -7.30 2.84 -164.24 -0.47 -7.76 16 7 C 0.10 0.74 6.70 -2.47 -0.02 0.72 16 8 C -0.13 -0.77 7.08 -24.59 -0.17 -0.94 16 9 C -0.12 -1.06 6.44 -24.90 -0.16 -1.22 16 10 C 0.15 1.91 3.37 -68.10 -0.23 1.68 16 11 H 0.11 1.29 8.14 -51.93 -0.42 0.87 16 12 C 0.44 8.05 6.64 36.01 0.24 8.29 16 13 O -0.46 -10.36 14.46 -24.05 -0.35 -10.71 16 14 O -0.30 -5.63 9.99 -23.60 -0.24 -5.87 16 15 C 0.12 2.64 5.18 -39.24 -0.20 2.44 16 16 C -0.21 -4.14 9.99 -39.38 -0.39 -4.54 16 17 C -0.06 -1.24 10.03 -39.63 -0.40 -1.64 16 18 C -0.19 -4.14 9.99 -39.37 -0.39 -4.53 16 19 C 0.16 4.20 6.65 -39.13 -0.26 3.94 16 20 O -0.17 -5.06 9.76 0.07 0.00 -5.06 16 21 C -0.39 -11.29 9.49 30.89 0.29 -11.00 16 22 H 0.09 2.44 5.20 -52.49 -0.27 2.17 16 23 C 0.04 1.13 5.49 -17.51 -0.10 1.04 16 24 N -0.86 -25.49 13.67 55.48 0.76 -24.73 16 25 Si 0.94 20.81 29.55 -169.99 -5.02 15.79 16 26 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 27 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 28 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 29 C -0.23 -5.54 8.58 -39.25 -0.34 -5.87 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.07 0.91 8.10 -51.93 -0.42 0.49 16 34 H 0.07 0.73 8.10 -51.93 -0.42 0.31 16 35 H 0.09 0.60 7.85 -51.93 -0.41 0.19 16 36 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.08 0.41 7.48 -51.93 -0.39 0.03 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 41 H 0.09 0.90 7.84 -51.93 -0.41 0.49 16 42 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 43 H 0.11 1.98 8.06 -52.49 -0.42 1.56 16 44 H 0.12 1.87 8.06 -52.49 -0.42 1.44 16 45 H 0.12 2.55 8.06 -52.49 -0.42 2.13 16 46 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 47 H 0.13 3.20 5.64 -52.48 -0.30 2.91 16 LS Contribution 395.30 15.07 5.96 5.96 Total: -1.00 -37.49 395.30 -8.42 -45.91 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: -6.82 Total: 3.96 kcal Atomic # 6 Polarization: -5.65 SS G_CDS: -2.11 Total: -7.76 kcal Atomic # 7 Polarization: -32.78 SS G_CDS: 0.29 Total: -32.49 kcal Atomic # 8 Polarization: -30.65 SS G_CDS: -0.72 Total: -31.37 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -37.49 -8.42 -45.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841342635.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.729 kcal (2) G-P(sol) polarization free energy of solvation -37.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds