Wall clock time and date at job start Wed Apr 1 2020 04:12:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53008 * 109.47183 * 2 1 4 4 C 1.50693 * 109.47120 * 179.97438 * 3 2 1 5 5 O 1.21279 * 120.00175 * 0.02562 * 4 3 2 6 6 N 1.34778 * 120.00281 * 179.97438 * 4 3 2 7 7 C 1.47533 * 125.63194 * 0.05057 * 6 4 3 8 8 C 1.54902 * 104.78222 * 155.84224 * 7 6 4 9 9 C 1.55147 * 101.62053 * 37.00116 * 8 7 6 10 10 C 1.47019 * 125.65321 * 179.97438 * 6 4 3 11 11 H 1.09003 * 109.88425 * 300.51819 * 10 6 4 12 12 C 1.50705 * 109.88164 * 61.68201 * 10 6 4 13 13 O 1.20830 * 119.99417 * 359.26019 * 12 10 6 14 14 O 1.34265 * 119.99915 * 179.26494 * 12 10 6 15 15 C 1.35919 * 116.99558 * 175.00908 * 14 12 10 16 16 C 1.38821 * 120.02213 * 255.01471 * 15 14 12 17 17 C 1.38194 * 120.08204 * 179.79516 * 16 15 14 18 18 C 1.38156 * 120.12275 * 0.46246 * 17 16 15 19 19 C 1.38896 * 120.04043 * 359.79357 * 18 17 16 20 20 O 1.35748 * 120.04085 * 179.97438 * 19 18 17 21 21 C 1.34824 * 117.00294 * 185.57127 * 20 19 18 22 22 H 1.08001 * 120.00128 * 354.94272 * 21 20 19 23 23 C 1.38654 * 120.00458 * 174.93421 * 21 20 19 24 24 N 1.31564 * 119.99439 * 0.02562 * 23 21 20 25 25 Si 1.86796 * 120.00428 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.46822 * 0.02562 * 25 23 21 27 27 H 1.48497 * 109.47487 * 120.00046 * 25 23 21 28 28 H 1.48500 * 109.47204 * 240.00336 * 25 23 21 29 29 C 1.38579 * 120.02181 * 75.29676 * 15 14 12 30 30 H 1.09006 * 109.47407 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47188 * 299.99684 * 1 2 3 32 32 H 1.08997 * 109.47448 * 59.99532 * 1 2 3 33 33 H 1.09005 * 109.47188 * 240.00316 * 2 1 3 34 34 H 1.08997 * 109.47448 * 120.00468 * 2 1 3 35 35 H 1.09000 * 109.46409 * 60.00276 * 3 2 1 36 36 H 1.08993 * 109.46899 * 300.00315 * 3 2 1 37 37 H 1.08998 * 110.41310 * 37.00284 * 7 6 4 38 38 H 1.09007 * 110.36722 * 274.64896 * 7 6 4 39 39 H 1.09004 * 111.00469 * 278.90663 * 8 7 6 40 40 H 1.08998 * 111.00720 * 155.09637 * 8 7 6 41 41 H 1.09002 * 110.72014 * 82.84222 * 9 8 7 42 42 H 1.09004 * 110.72305 * 206.11842 * 9 8 7 43 43 H 1.07994 * 119.95692 * 0.02694 * 16 15 14 44 44 H 1.08001 * 119.93910 * 180.25901 * 17 16 15 45 45 H 1.07997 * 119.97740 * 179.76772 * 18 17 16 46 46 H 0.96998 * 119.99349 * 179.97438 * 24 23 21 47 47 H 1.08007 * 120.06059 * 359.94941 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5469 1.4425 0.0006 5 8 4.1533 0.3923 0.0006 6 7 4.2209 2.6097 0.0002 7 6 3.6122 3.9536 0.0002 8 6 4.6943 4.8775 0.6127 9 6 5.9948 4.2658 0.0282 10 6 5.6839 2.7545 0.0013 11 1 6.1034 2.2737 0.8851 12 6 6.2611 2.1349 -1.2454 13 8 5.5313 1.6096 -2.0524 14 8 7.5863 2.1665 -1.4591 15 6 8.0516 1.5000 -2.5483 16 6 8.7058 0.2855 -2.3924 17 6 9.1758 -0.3953 -3.4994 18 6 9.0046 0.1349 -4.7637 19 6 8.3555 1.3522 -4.9252 20 8 8.1877 1.8734 -6.1673 21 6 7.6541 3.1090 -6.2458 22 1 7.3062 3.6048 -5.3516 23 6 7.5522 3.7435 -7.4744 24 7 7.9758 3.1395 -8.5638 25 14 6.8135 5.4558 -7.5831 26 1 6.4176 5.9110 -6.2261 27 1 7.8182 6.3935 -8.1456 28 1 5.6182 5.4243 -8.4636 29 6 7.8786 2.0351 -3.8149 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 1.6766 1.9563 0.8900 36 1 1.6766 1.9563 -0.8899 37 1 2.7124 3.9635 0.6153 38 1 3.3799 4.2649 -1.0183 39 1 4.6890 4.8174 1.7010 40 1 4.5629 5.9071 0.2798 41 1 6.1783 4.6401 -0.9789 42 1 6.8446 4.4730 0.6786 43 1 8.8444 -0.1295 -1.4051 44 1 9.6807 -1.3419 -3.3757 45 1 9.3761 -0.3973 -5.6268 46 1 7.9041 3.5832 -9.4233 47 1 7.3731 2.9817 -3.9378 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000841342635.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:12:38 Heat of formation + Delta-G solvation = -134.864854 kcal Electronic energy + Delta-G solvation = -30882.092995 eV Core-core repulsion = 26609.272191 eV Total energy + Delta-G solvation = -4272.820805 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.61755 -41.26690 -40.47581 -38.91147 -38.22738 -37.39261 -35.36975 -34.38871 -32.92906 -31.79088 -30.96979 -30.49140 -28.74252 -27.51772 -25.78492 -24.43727 -23.52296 -22.80101 -22.65848 -21.73847 -20.28889 -20.17275 -19.59789 -18.82480 -18.31938 -17.80070 -17.26764 -17.07134 -16.94426 -16.65401 -16.12513 -15.97275 -15.80037 -15.61363 -15.13123 -14.96726 -14.66251 -14.64221 -14.37423 -14.24393 -13.87601 -13.77531 -13.48718 -13.19367 -13.13870 -12.99906 -12.84889 -12.82627 -12.69896 -12.55676 -12.28348 -12.18251 -12.00840 -11.99069 -11.94014 -11.70988 -11.66153 -11.47565 -11.00918 -10.90357 -10.01431 -9.82625 -9.22681 -8.56833 -6.26874 0.05272 0.47154 0.94236 1.27634 1.28098 1.37667 1.46905 1.73717 1.95958 2.10229 2.67238 3.00273 3.25699 3.28417 3.39175 3.64945 3.69679 3.89674 3.92198 3.95414 4.04047 4.09658 4.13560 4.24222 4.42640 4.45550 4.47434 4.60785 4.64582 4.66701 4.72997 4.76706 4.79666 4.85564 4.87518 4.96501 5.04149 5.15894 5.18122 5.22578 5.26573 5.28774 5.35428 5.41354 5.43201 5.47371 5.89437 5.92242 6.32926 6.65258 6.86198 7.05468 7.60537 8.65815 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.009244 B = 0.003228 C = 0.002984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3028.201222 B = 8673.080242 C = 9382.605100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.112 4.112 3 C -0.124 4.124 4 C 0.520 3.480 5 O -0.580 6.580 6 N -0.611 5.611 7 C 0.087 3.913 8 C -0.115 4.115 9 C -0.119 4.119 10 C 0.150 3.850 11 H 0.129 0.871 12 C 0.437 3.563 13 O -0.514 6.514 14 O -0.291 6.291 15 C 0.113 3.887 16 C -0.196 4.196 17 C -0.048 4.048 18 C -0.195 4.195 19 C 0.128 3.872 20 O -0.219 6.219 21 C -0.420 4.420 22 H 0.090 0.910 23 C -0.017 4.017 24 N -0.913 5.913 25 Si 1.018 2.982 26 H -0.256 1.256 27 H -0.259 1.259 28 H -0.264 1.264 29 C -0.244 4.244 30 H 0.057 0.943 31 H 0.076 0.924 32 H 0.059 0.941 33 H 0.035 0.965 34 H 0.060 0.940 35 H 0.133 0.867 36 H 0.104 0.896 37 H 0.122 0.878 38 H 0.064 0.936 39 H 0.108 0.892 40 H 0.114 0.886 41 H 0.065 0.935 42 H 0.126 0.874 43 H 0.150 0.850 44 H 0.175 0.825 45 H 0.133 0.867 46 H 0.276 0.724 47 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.494 5.396 24.613 27.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.150 4.150 3 C -0.163 4.163 4 C 0.312 3.688 5 O -0.459 6.459 6 N -0.347 5.347 7 C -0.034 4.034 8 C -0.153 4.153 9 C -0.157 4.157 10 C 0.044 3.956 11 H 0.147 0.853 12 C 0.280 3.720 13 O -0.399 6.399 14 O -0.206 6.206 15 C 0.072 3.928 16 C -0.215 4.215 17 C -0.065 4.065 18 C -0.214 4.214 19 C 0.077 3.923 20 O -0.125 6.125 21 C -0.496 4.496 22 H 0.108 0.892 23 C -0.215 4.215 24 N -0.550 5.550 25 Si 0.837 3.163 26 H -0.180 1.180 27 H -0.183 1.183 28 H -0.189 1.189 29 C -0.264 4.264 30 H 0.076 0.924 31 H 0.095 0.905 32 H 0.078 0.922 33 H 0.054 0.946 34 H 0.078 0.922 35 H 0.151 0.849 36 H 0.122 0.878 37 H 0.140 0.860 38 H 0.083 0.917 39 H 0.126 0.874 40 H 0.132 0.868 41 H 0.084 0.916 42 H 0.144 0.856 43 H 0.168 0.832 44 H 0.193 0.807 45 H 0.151 0.849 46 H 0.086 0.914 47 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -11.406 4.551 23.889 26.860 hybrid contribution 0.082 0.206 -1.120 1.141 sum -11.324 4.757 22.769 25.871 Atomic orbital electron populations 1.21736 0.92969 1.02503 1.02954 1.21279 0.97274 0.94830 1.01605 1.21749 0.87737 1.00298 1.06511 1.21369 0.91943 0.81565 0.73936 1.90699 1.71675 1.32617 1.50874 1.48699 1.04564 1.08014 1.73378 1.22829 0.98950 0.79285 1.02349 1.22872 0.90282 0.99763 1.02363 1.22760 1.02101 0.87157 1.03690 1.21450 0.82872 1.00091 0.91176 0.85308 1.25575 0.80033 0.76980 0.89403 1.90710 1.60481 1.41683 1.47008 1.84514 1.25638 1.67002 1.43444 1.18423 0.97617 0.92734 0.84053 1.21085 1.05860 0.93625 1.00952 1.21064 0.96497 0.99628 0.89351 1.20707 1.05509 0.95586 0.99604 1.19684 0.93695 0.93974 0.84935 1.83957 1.72844 1.32365 1.23374 1.21738 1.40995 0.90752 0.96090 0.89240 1.26612 0.97153 1.04565 0.93201 1.70174 1.45385 1.40095 0.99341 0.84559 0.78182 0.74134 0.79465 1.17960 1.18350 1.18897 1.21127 1.09683 1.03261 0.92350 0.92362 0.90541 0.92206 0.94598 0.92158 0.84872 0.87818 0.86022 0.91721 0.87363 0.86795 0.91573 0.85579 0.83215 0.80732 0.84899 0.91444 0.87125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 9.91 71.98 0.71 -1.23 16 2 C -0.11 -2.27 5.22 30.59 0.16 -2.11 16 3 C -0.12 -2.17 4.71 29.85 0.14 -2.03 16 4 C 0.52 14.27 7.01 87.65 0.61 14.88 16 5 O -0.58 -22.08 15.24 10.76 0.16 -21.91 16 6 N -0.61 -13.75 2.84 -791.92 -2.25 -16.01 16 7 C 0.09 1.04 6.70 86.83 0.58 1.63 16 8 C -0.12 -0.87 7.08 31.98 0.23 -0.64 16 9 C -0.12 -1.81 6.44 31.78 0.20 -1.61 16 10 C 0.15 3.62 3.37 44.60 0.15 3.77 16 11 H 0.13 2.71 8.14 -2.39 -0.02 2.69 16 12 C 0.44 16.19 6.64 71.24 0.47 16.66 16 13 O -0.51 -23.99 14.46 27.02 0.39 -23.60 16 14 O -0.29 -11.12 9.99 4.58 0.05 -11.07 16 15 C 0.11 4.95 5.18 22.49 0.12 5.07 16 16 C -0.20 -7.45 9.99 22.40 0.22 -7.23 16 17 C -0.05 -1.73 10.03 22.24 0.22 -1.51 16 18 C -0.19 -8.76 9.99 22.41 0.22 -8.53 16 19 C 0.13 6.95 6.65 22.56 0.15 7.10 16 20 O -0.22 -13.87 9.76 -22.65 -0.22 -14.09 16 21 C -0.42 -25.82 9.49 67.92 0.64 -25.18 16 22 H 0.09 5.26 5.20 -2.91 -0.02 5.25 16 23 C -0.02 -0.99 5.49 84.83 0.47 -0.52 16 24 N -0.91 -56.77 13.67 21.61 0.30 -56.48 16 25 Si 1.02 43.85 29.55 68.60 2.03 45.88 16 26 H -0.26 -10.35 7.11 99.48 0.71 -9.65 16 27 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 28 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 29 C -0.24 -12.46 8.58 22.49 0.19 -12.27 16 30 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 31 H 0.08 0.70 8.14 -2.38 -0.02 0.68 16 32 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.04 0.96 8.10 -2.38 -0.02 0.94 16 34 H 0.06 1.30 8.10 -2.39 -0.02 1.28 16 35 H 0.13 1.21 7.85 -2.39 -0.02 1.19 16 36 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.12 0.59 7.48 -2.39 -0.02 0.58 16 38 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 39 H 0.11 0.36 8.14 -2.39 -0.02 0.34 16 40 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16 41 H 0.07 1.31 7.84 -2.39 -0.02 1.29 16 42 H 0.13 1.27 8.14 -2.38 -0.02 1.25 16 43 H 0.15 4.65 8.06 -2.91 -0.02 4.63 16 44 H 0.18 4.53 8.06 -2.91 -0.02 4.50 16 45 H 0.13 5.60 8.06 -2.91 -0.02 5.58 16 46 H 0.28 15.56 8.31 -92.71 -0.77 14.79 16 47 H 0.11 5.92 5.64 -2.91 -0.02 5.90 16 Total: -1.00 -92.02 395.30 6.93 -85.08 By element: Atomic # 1 Polarization: 24.94 SS G_CDS: 0.98 Total: 25.92 kcal Atomic # 6 Polarization: -19.24 SS G_CDS: 5.51 Total: -13.73 kcal Atomic # 7 Polarization: -70.52 SS G_CDS: -1.96 Total: -72.48 kcal Atomic # 8 Polarization: -71.05 SS G_CDS: 0.38 Total: -70.67 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Total: -92.02 6.93 -85.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841342635.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.782 kcal (2) G-P(sol) polarization free energy of solvation -92.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds