Wall clock time and date at job start Wed Apr 1 2020 05:16:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50700 * 109.46852 * 2 1 4 4 O 1.21279 * 120.00399 * 0.02562 * 3 2 1 5 5 N 1.34779 * 119.99715 * 179.97438 * 3 2 1 6 6 C 1.46924 * 120.63244 * 0.02562 * 5 3 2 7 7 C 1.53196 * 108.77219 * 126.36759 * 6 5 3 8 8 C 1.53038 * 109.30942 * 54.64229 * 7 6 5 9 9 C 1.53045 * 109.53847 * 298.62792 * 8 7 6 10 10 H 1.08995 * 109.49337 * 301.42021 * 9 8 7 11 11 C 1.50702 * 109.49900 * 181.31996 * 9 8 7 12 12 O 1.20826 * 119.99660 * 0.02562 * 11 9 8 13 13 O 1.34260 * 119.99889 * 180.02562 * 11 9 8 14 14 C 1.35920 * 117.00169 * 175.01140 * 13 11 9 15 15 C 1.38816 * 120.02335 * 255.02604 * 14 13 11 16 16 C 1.38191 * 120.08370 * 179.74590 * 15 14 13 17 17 C 1.38159 * 120.12140 * 0.54613 * 16 15 14 18 18 C 1.38895 * 120.03802 * 359.70784 * 17 16 15 19 19 O 1.35757 * 120.03815 * 180.02562 * 18 17 16 20 20 C 1.34834 * 116.99864 * 185.56940 * 19 18 17 21 21 H 1.07996 * 119.99967 * 354.93600 * 20 19 18 22 22 C 1.38651 * 120.00073 * 174.93158 * 20 19 18 23 23 N 1.31560 * 119.99649 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 120.00334 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47229 * 89.99767 * 24 22 20 26 26 H 1.48500 * 109.47316 * 210.00333 * 24 22 20 27 27 H 1.48508 * 109.46869 * 330.00243 * 24 22 20 28 28 C 1.38581 * 120.01809 * 75.29353 * 14 13 11 29 29 C 1.46928 * 120.62806 * 180.02562 * 5 3 2 30 30 H 1.08998 * 109.47185 * 300.00490 * 1 2 3 31 31 H 1.09002 * 109.46738 * 60.00153 * 1 2 3 32 32 H 1.08997 * 109.46805 * 180.02562 * 1 2 3 33 33 H 1.08991 * 109.47319 * 240.00183 * 2 1 3 34 34 H 1.09002 * 109.47138 * 119.99486 * 2 1 3 35 35 H 1.08994 * 109.59232 * 246.15862 * 6 5 3 36 36 H 1.09004 * 109.58346 * 6.44598 * 6 5 3 37 37 H 1.08998 * 109.50025 * 294.68644 * 7 6 5 38 38 H 1.09006 * 109.49535 * 174.58613 * 7 6 5 39 39 H 1.09001 * 109.45836 * 178.61157 * 8 7 6 40 40 H 1.08995 * 109.46677 * 58.65123 * 8 7 6 41 41 H 1.08002 * 119.95997 * 0.02562 * 15 14 13 42 42 H 1.07993 * 119.94113 * 180.29749 * 16 15 14 43 43 H 1.08000 * 119.98008 * 179.72676 * 17 16 15 44 44 H 0.97001 * 120.00313 * 179.97438 * 23 22 20 45 45 H 1.07999 * 120.06133 * 0.02562 * 28 14 13 46 46 H 1.08999 * 109.58573 * 113.84578 * 29 5 3 47 47 H 1.08998 * 109.58939 * 353.41590 * 29 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3427 0.0005 5 7 3.3574 1.6671 0.0005 6 6 4.3244 0.5610 0.0005 7 6 5.2968 0.7562 -1.1670 8 6 5.9312 2.1456 -1.0704 9 6 4.8400 3.2143 -1.1668 10 1 4.3038 3.1027 -2.1091 11 6 5.4688 4.5824 -1.1041 12 8 6.6671 4.6920 -0.9940 13 8 4.6976 5.6794 -1.1704 14 6 5.3150 6.8788 -1.0037 15 6 5.1708 7.5743 0.1891 16 6 5.8022 8.7913 0.3619 17 6 6.5695 9.3250 -0.6555 18 6 6.7129 8.6360 -1.8529 19 8 7.4673 9.1602 -2.8525 20 6 7.4718 8.4987 -4.0274 21 1 6.9588 7.5525 -4.1163 22 6 8.1349 9.0332 -5.1214 23 7 8.7593 10.1861 -5.0132 24 14 8.1406 8.1171 -6.7493 25 1 6.9733 8.5443 -7.5618 26 1 9.3940 8.4224 -7.4848 27 1 8.0589 6.6562 -6.4954 28 6 6.0842 7.4108 -2.0263 29 6 3.8623 3.0469 0.0011 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 4.8772 0.5587 0.9399 36 1 3.7967 -0.3857 -0.1152 37 1 4.7563 0.6678 -2.1094 38 1 6.0769 -0.0038 -1.1218 39 1 6.6420 2.2778 -1.8861 40 1 6.4507 2.2421 -0.1171 41 1 4.5682 7.1616 0.9846 42 1 5.6924 9.3281 1.2926 43 1 7.0583 10.2784 -0.5195 44 1 9.2236 10.5600 -5.7785 45 1 6.1936 6.8733 -2.9567 46 1 4.3775 3.2471 0.9406 47 1 3.0300 3.7407 -0.1167 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000841342946.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:16:53 Heat of formation + Delta-G solvation = -139.945005 kcal Electronic energy + Delta-G solvation = -30337.301363 eV Core-core repulsion = 26064.260267 eV Total energy + Delta-G solvation = -4273.041096 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.60096 -41.27256 -40.60843 -39.09592 -38.13836 -37.41083 -34.49157 -34.36881 -33.44393 -32.55715 -31.32451 -30.66133 -27.55111 -27.09064 -26.42133 -24.43757 -24.03945 -23.44247 -22.47239 -21.34141 -20.16372 -19.95201 -19.56778 -18.67213 -18.13338 -17.68450 -17.53123 -16.93122 -16.77373 -16.68318 -16.17412 -16.09565 -15.66264 -15.39211 -15.30007 -15.11764 -14.78325 -14.67942 -14.49274 -14.39225 -13.83684 -13.76635 -13.70015 -13.22161 -13.09550 -13.06310 -12.80781 -12.75966 -12.59884 -12.52897 -12.21014 -12.07642 -12.02600 -11.97904 -11.95756 -11.83959 -11.74643 -11.49697 -10.89339 -10.82604 -9.85986 -9.77962 -9.20803 -8.56301 -6.25931 0.09038 0.49796 0.85215 1.27931 1.36962 1.45493 1.55865 1.63237 1.97857 2.10341 2.68244 3.01103 3.30087 3.36880 3.45374 3.57142 3.69827 3.91152 3.94261 4.02815 4.07005 4.14355 4.19868 4.26898 4.29416 4.42272 4.48458 4.51670 4.60775 4.67757 4.74083 4.78141 4.82120 4.88810 4.97692 4.99819 5.05136 5.06541 5.09285 5.29232 5.31411 5.34722 5.37954 5.44109 5.46434 5.49698 5.90336 5.93439 6.36050 6.62319 6.87092 7.14383 7.61718 8.65938 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.013300 B = 0.002530 C = 0.002319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2104.744910 B =11065.658687 C =12068.866684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.135 4.135 3 C 0.504 3.496 4 O -0.589 6.589 5 N -0.611 5.611 6 C 0.098 3.902 7 C -0.126 4.126 8 C -0.106 4.106 9 C -0.079 4.079 10 H 0.119 0.881 11 C 0.459 3.541 12 O -0.513 6.513 13 O -0.296 6.296 14 C 0.112 3.888 15 C -0.192 4.192 16 C -0.046 4.046 17 C -0.193 4.193 18 C 0.128 3.872 19 O -0.219 6.219 20 C -0.419 4.419 21 H 0.090 0.910 22 C -0.016 4.016 23 N -0.912 5.912 24 Si 1.016 2.984 25 H -0.259 1.259 26 H -0.263 1.263 27 H -0.260 1.260 28 C -0.249 4.249 29 C 0.126 3.874 30 H 0.043 0.957 31 H 0.041 0.959 32 H 0.087 0.913 33 H 0.122 0.878 34 H 0.124 0.876 35 H 0.087 0.913 36 H 0.126 0.874 37 H 0.075 0.925 38 H 0.112 0.888 39 H 0.065 0.935 40 H 0.074 0.926 41 H 0.155 0.845 42 H 0.177 0.823 43 H 0.133 0.867 44 H 0.276 0.724 45 H 0.109 0.891 46 H 0.081 0.919 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.640 -26.477 11.602 31.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.174 4.174 3 C 0.295 3.705 4 O -0.469 6.469 5 N -0.344 5.344 6 C -0.023 4.023 7 C -0.163 4.163 8 C -0.144 4.144 9 C -0.099 4.099 10 H 0.137 0.863 11 C 0.303 3.697 12 O -0.399 6.399 13 O -0.211 6.211 14 C 0.071 3.929 15 C -0.211 4.211 16 C -0.064 4.064 17 C -0.212 4.212 18 C 0.076 3.924 19 O -0.125 6.125 20 C -0.495 4.495 21 H 0.107 0.893 22 C -0.214 4.214 23 N -0.549 5.549 24 Si 0.834 3.166 25 H -0.184 1.184 26 H -0.187 1.187 27 H -0.184 1.184 28 C -0.268 4.268 29 C 0.002 3.998 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.106 0.894 33 H 0.140 0.860 34 H 0.142 0.858 35 H 0.105 0.895 36 H 0.143 0.857 37 H 0.093 0.907 38 H 0.130 0.870 39 H 0.084 0.916 40 H 0.093 0.907 41 H 0.173 0.827 42 H 0.194 0.806 43 H 0.151 0.849 44 H 0.085 0.915 45 H 0.127 0.873 46 H 0.099 0.901 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -11.403 -25.623 11.497 30.311 hybrid contribution 0.470 0.630 -1.180 1.417 sum -10.934 -24.993 10.317 29.166 Atomic orbital electron populations 1.21567 0.93879 1.02672 1.01669 1.21756 0.97792 0.90934 1.06902 1.21722 0.81168 0.93361 0.74216 1.90712 1.56037 1.48517 1.51649 1.48260 1.06315 1.06629 1.73190 1.22195 0.90697 0.89678 0.99692 1.21950 0.99724 0.95256 0.99406 1.21527 0.95550 0.93522 1.03820 1.21562 0.99086 0.85895 1.03377 0.86339 1.24748 0.85950 0.87327 0.71702 1.90718 1.17295 1.87269 1.44570 1.84563 1.41110 1.13418 1.81999 1.18437 0.95782 0.84425 0.94294 1.21085 1.06007 0.98130 0.95897 1.21081 0.92891 0.94004 0.98423 1.20717 1.06044 1.02078 0.92371 1.19708 0.90258 0.91912 0.90474 1.83959 1.58878 1.49690 1.19986 1.21678 1.36658 1.05132 0.86058 0.89283 1.26549 0.94940 0.97194 1.02748 1.70155 1.32796 1.18899 1.33013 0.84645 0.79088 0.77990 0.74830 1.18390 1.18692 1.18403 1.21162 1.05700 0.99027 1.00947 1.21270 0.96769 0.85431 0.96320 0.93728 0.93932 0.89401 0.85988 0.85831 0.89458 0.85652 0.90651 0.87007 0.91600 0.90710 0.82744 0.80583 0.84943 0.91458 0.87274 0.90121 0.89727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 9.20 71.98 0.66 -0.90 16 2 C -0.13 -1.05 4.77 29.85 0.14 -0.91 16 3 C 0.50 8.95 7.70 87.66 0.67 9.63 16 4 O -0.59 -16.76 15.39 -3.03 -0.05 -16.81 16 5 N -0.61 -9.00 2.97 -818.84 -2.43 -11.43 16 6 C 0.10 0.60 6.34 86.36 0.55 1.15 16 7 C -0.13 -1.00 6.08 30.67 0.19 -0.81 16 8 C -0.11 -1.82 4.46 30.62 0.14 -1.68 16 9 C -0.08 -1.75 2.78 -11.45 -0.03 -1.79 16 10 H 0.12 2.50 8.14 -2.39 -0.02 2.48 16 11 C 0.46 15.19 7.12 71.24 0.51 15.69 16 12 O -0.51 -20.58 15.41 21.96 0.34 -20.24 16 13 O -0.30 -10.92 9.96 4.62 0.05 -10.87 16 14 C 0.11 4.65 5.18 22.49 0.12 4.77 16 15 C -0.19 -6.71 9.98 22.40 0.22 -6.49 16 16 C -0.05 -1.56 10.03 22.24 0.22 -1.33 16 17 C -0.19 -8.28 9.99 22.41 0.22 -8.06 16 18 C 0.13 6.73 6.65 22.56 0.15 6.88 16 19 O -0.22 -13.64 9.76 -22.85 -0.22 -13.86 16 20 C -0.42 -25.65 9.49 67.92 0.64 -25.00 16 21 H 0.09 5.22 5.20 -2.91 -0.02 5.20 16 22 C -0.02 -0.91 5.49 84.83 0.47 -0.45 16 23 N -0.91 -56.48 13.67 21.61 0.30 -56.19 16 24 Si 1.02 44.31 29.55 68.60 2.03 46.34 16 25 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 26 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 27 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 28 C -0.25 -12.34 8.58 22.49 0.19 -12.14 16 29 C 0.13 2.56 5.65 86.37 0.49 3.04 16 30 H 0.04 0.65 8.10 -2.39 -0.02 0.63 16 31 H 0.04 0.64 8.10 -2.39 -0.02 0.62 16 32 H 0.09 0.50 8.14 -2.39 -0.02 0.49 16 33 H 0.12 0.32 7.69 -2.39 -0.02 0.31 16 34 H 0.12 0.27 7.94 -2.39 -0.02 0.26 16 35 H 0.09 0.39 8.14 -2.39 -0.02 0.37 16 36 H 0.13 -0.06 5.93 -2.39 -0.01 -0.07 16 37 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 38 H 0.11 0.41 8.14 -2.38 -0.02 0.39 16 39 H 0.07 1.34 8.07 -2.39 -0.02 1.32 16 40 H 0.07 1.32 8.13 -2.39 -0.02 1.30 16 41 H 0.15 4.22 8.06 -2.91 -0.02 4.20 16 42 H 0.18 4.09 8.06 -2.91 -0.02 4.06 16 43 H 0.13 5.35 8.06 -2.91 -0.02 5.32 16 44 H 0.28 15.56 8.31 -92.71 -0.77 14.79 16 45 H 0.11 5.76 5.64 -2.91 -0.02 5.74 16 46 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 47 H 0.08 2.16 7.00 -2.39 -0.02 2.14 16 Total: -1.00 -86.52 390.67 6.54 -79.97 By element: Atomic # 1 Polarization: 20.51 SS G_CDS: 0.99 Total: 21.50 kcal Atomic # 6 Polarization: -23.96 SS G_CDS: 5.55 Total: -18.41 kcal Atomic # 7 Polarization: -65.48 SS G_CDS: -2.14 Total: -67.62 kcal Atomic # 8 Polarization: -61.90 SS G_CDS: 0.11 Total: -61.78 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.34 kcal Total: -86.52 6.54 -79.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841342946.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.973 kcal (2) G-P(sol) polarization free energy of solvation -86.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds