Wall clock time and date at job start Wed Apr 1 2020 05:16:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50703 * 109.46654 * 2 1 4 4 O 1.21280 * 120.00488 * 0.02562 * 3 2 1 5 5 N 1.34782 * 119.99622 * 179.97438 * 3 2 1 6 6 C 1.46923 * 120.63245 * 5.08142 * 5 3 2 7 7 C 1.53191 * 108.77959 * 233.61264 * 6 5 3 8 8 C 1.53048 * 109.30700 * 305.36417 * 7 6 5 9 9 C 1.53034 * 109.53829 * 61.36584 * 8 7 6 10 10 C 1.46921 * 120.63016 * 185.08431 * 5 3 2 11 11 H 1.09002 * 109.70671 * 246.24736 * 10 5 3 12 12 C 1.50707 * 109.58752 * 6.60418 * 10 5 3 13 13 O 1.20819 * 120.00261 * 63.09143 * 12 10 5 14 14 O 1.34269 * 119.99459 * 243.09245 * 12 10 5 15 15 C 1.35927 * 116.99542 * 185.35949 * 14 12 10 16 16 C 1.38827 * 120.02029 * 260.04842 * 15 14 12 17 17 C 1.38186 * 120.07946 * 179.97438 * 16 15 14 18 18 C 1.38149 * 120.12606 * 0.02562 * 17 16 15 19 19 C 1.38896 * 120.04454 * 359.97438 * 18 17 16 20 20 O 1.35746 * 120.04551 * 179.97438 * 19 18 17 21 21 C 1.34824 * 117.00091 * 185.52998 * 20 19 18 22 22 H 1.08001 * 119.99779 * 4.80556 * 21 20 19 23 23 C 1.38651 * 119.99889 * 184.80789 * 21 20 19 24 24 N 1.31556 * 120.00301 * 359.97438 * 23 21 20 25 25 Si 1.86806 * 119.99836 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.47006 * 90.00126 * 25 23 21 27 27 H 1.48500 * 109.47211 * 209.99764 * 25 23 21 28 28 H 1.48504 * 109.47359 * 329.99878 * 25 23 21 29 29 C 1.38572 * 120.02062 * 80.02408 * 15 14 12 30 30 H 1.09005 * 109.46906 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.47281 * 299.99793 * 1 2 3 32 32 H 1.08998 * 109.47178 * 59.99933 * 1 2 3 33 33 H 1.08998 * 109.47161 * 240.00547 * 2 1 3 34 34 H 1.08998 * 109.47178 * 120.00067 * 2 1 3 35 35 H 1.08998 * 109.58915 * 113.82007 * 6 5 3 36 36 H 1.09006 * 109.70249 * 353.46424 * 6 5 3 37 37 H 1.08994 * 109.50229 * 185.41774 * 7 6 5 38 38 H 1.08992 * 109.49844 * 65.31304 * 7 6 5 39 39 H 1.08999 * 109.45790 * 301.34128 * 8 7 6 40 40 H 1.08997 * 109.45664 * 181.38795 * 8 7 6 41 41 H 1.09004 * 109.49486 * 178.68038 * 9 8 7 42 42 H 1.09000 * 109.50201 * 58.58661 * 9 8 7 43 43 H 1.07998 * 119.96046 * 359.96160 * 16 15 14 44 44 H 1.08004 * 119.93666 * 180.02562 * 17 16 15 45 45 H 1.08001 * 119.97863 * 180.27849 * 18 17 16 46 46 H 0.97001 * 120.00281 * 180.02562 * 24 23 21 47 47 H 1.08000 * 120.06131 * 0.02562 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2441 2.3427 0.0005 5 7 3.3574 1.6672 0.0005 6 6 4.3236 0.5660 -0.1109 7 6 5.3143 0.6594 1.0538 8 6 5.9480 2.0525 1.0685 9 6 4.8591 3.1079 1.2747 10 6 3.8632 3.0420 0.1126 11 1 4.3629 3.3264 -0.8135 12 6 2.7156 3.9826 0.3768 13 8 2.0696 3.8772 1.3923 14 8 2.4112 4.9377 -0.5165 15 6 1.4395 5.8217 -0.1675 16 6 0.1481 5.6612 -0.6512 17 6 -0.8408 6.5589 -0.2967 18 6 -0.5478 7.6190 0.5393 19 6 0.7425 7.7845 1.0262 20 8 1.0305 8.8264 1.8473 21 6 2.3231 8.9953 2.1915 22 1 3.0847 8.3657 1.7555 23 6 2.6746 9.9771 3.1052 24 7 1.7470 10.7443 3.6360 25 14 4.4655 10.2106 3.5827 26 1 5.0994 11.1890 2.6630 27 1 4.5442 10.7181 4.9760 28 1 5.1765 8.9102 3.4886 29 6 1.7371 6.8835 0.6717 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5137 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 4.8614 0.6459 -1.0555 36 1 3.7991 -0.3887 -0.0686 37 1 6.0931 -0.0931 0.9303 38 1 4.7886 0.4890 1.9932 39 1 6.4526 2.2319 0.1191 40 1 6.6716 2.1136 1.8813 41 1 5.3139 4.0979 1.3085 42 1 4.3377 2.9144 2.2121 43 1 -0.0838 4.8338 -1.3054 44 1 -1.8448 6.4316 -0.6740 45 1 -1.3235 8.3166 0.8184 46 1 1.9930 11.4314 4.2749 47 1 2.7411 7.0100 1.0490 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000841342951.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:16:48 Heat of formation + Delta-G solvation = -106.304437 kcal Electronic energy + Delta-G solvation = -31553.782389 eV Core-core repulsion = 27282.200057 eV Total energy + Delta-G solvation = -4271.582332 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.35108 -39.95653 -38.55325 -37.77533 -36.65971 -35.51400 -33.53579 -32.85447 -32.23665 -31.66282 -29.59002 -28.75682 -26.65677 -25.36147 -24.51030 -24.47167 -22.45174 -21.56392 -21.05655 -20.48107 -19.08903 -18.19218 -18.01662 -17.36951 -16.62867 -16.47029 -15.85966 -15.60886 -15.40091 -15.00856 -14.76093 -14.63209 -14.24019 -14.14360 -13.99902 -13.92670 -13.54483 -13.36498 -13.22328 -12.93038 -12.82778 -12.44341 -12.40690 -11.94055 -11.84118 -11.76058 -11.52180 -11.40328 -11.32011 -11.24376 -11.20382 -11.05454 -10.91304 -10.77647 -10.45375 -10.13342 -9.98816 -9.69402 -9.46125 -8.97919 -8.80599 -8.02642 -7.22398 -6.41909 -4.01039 1.88460 2.24169 2.36796 2.45431 2.99568 3.13360 3.14608 3.19721 3.21317 3.99017 4.23521 4.31955 4.47014 4.53059 4.59267 4.63473 4.77918 4.83616 4.84182 4.99005 5.04648 5.10468 5.17215 5.26192 5.30517 5.35390 5.45529 5.48522 5.57909 5.66905 5.71453 5.74199 5.74512 5.95747 5.98441 6.03834 6.11945 6.13739 6.30164 6.51293 6.69367 7.02101 7.07314 7.17704 7.24179 7.28919 7.42210 7.75612 7.96810 8.02200 8.43600 9.03328 9.72251 10.76134 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.011632 B = 0.003480 C = 0.002817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2406.558651 B = 8043.531235 C = 9935.832103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.135 4.135 3 C 0.503 3.497 4 O -0.497 6.497 5 N -0.610 5.610 6 C 0.111 3.889 7 C -0.139 4.139 8 C -0.116 4.116 9 C -0.128 4.128 10 C 0.159 3.841 11 H 0.102 0.898 12 C 0.473 3.527 13 O -0.473 6.473 14 O -0.300 6.300 15 C 0.133 3.867 16 C -0.196 4.196 17 C -0.068 4.068 18 C -0.188 4.188 19 C 0.163 3.837 20 O -0.174 6.174 21 C -0.391 4.391 22 H 0.089 0.911 23 C 0.040 3.960 24 N -0.862 5.862 25 Si 0.940 3.060 26 H -0.272 1.272 27 H -0.277 1.277 28 H -0.268 1.268 29 C -0.235 4.235 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.092 0.908 34 H 0.093 0.907 35 H 0.074 0.926 36 H 0.091 0.909 37 H 0.079 0.921 38 H 0.071 0.929 39 H 0.069 0.931 40 H 0.075 0.925 41 H 0.086 0.914 42 H 0.083 0.917 43 H 0.113 0.887 44 H 0.120 0.880 45 H 0.122 0.878 46 H 0.270 0.730 47 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.051 -24.090 -8.573 26.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.175 4.175 3 C 0.291 3.709 4 O -0.371 6.371 5 N -0.348 5.348 6 C -0.011 4.011 7 C -0.177 4.177 8 C -0.154 4.154 9 C -0.166 4.166 10 C 0.054 3.946 11 H 0.120 0.880 12 C 0.316 3.684 13 O -0.356 6.356 14 O -0.215 6.215 15 C 0.092 3.908 16 C -0.215 4.215 17 C -0.086 4.086 18 C -0.207 4.207 19 C 0.110 3.890 20 O -0.077 6.077 21 C -0.468 4.468 22 H 0.107 0.893 23 C -0.164 4.164 24 N -0.497 5.497 25 Si 0.764 3.236 26 H -0.198 1.198 27 H -0.202 1.202 28 H -0.193 1.193 29 C -0.255 4.255 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.110 0.890 34 H 0.111 0.889 35 H 0.093 0.907 36 H 0.109 0.891 37 H 0.098 0.902 38 H 0.090 0.910 39 H 0.088 0.912 40 H 0.093 0.907 41 H 0.104 0.896 42 H 0.102 0.898 43 H 0.131 0.869 44 H 0.138 0.862 45 H 0.140 0.860 46 H 0.080 0.920 47 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 7.215 -23.238 -7.966 25.603 hybrid contribution 1.049 0.039 0.296 1.090 sum 8.263 -23.199 -7.670 25.794 Atomic orbital electron populations 1.21557 0.92724 1.01535 1.03825 1.21604 0.98856 0.93064 1.03955 1.21036 0.81429 0.92563 0.75863 1.90831 1.53973 1.44924 1.47358 1.48112 1.06013 1.05835 1.74879 1.21803 0.90811 0.89383 0.99091 1.21977 0.98752 0.97912 0.99108 1.21498 0.97263 0.93710 1.02887 1.21931 0.95862 1.01042 0.97792 1.20660 0.91573 0.80867 1.01454 0.88049 1.22811 0.83645 0.79876 0.82108 1.90681 1.48197 1.68874 1.27844 1.84412 1.52580 1.38929 1.45604 1.18113 0.86784 0.88351 0.97533 1.20562 0.91399 1.02406 1.07140 1.20489 0.97882 0.93600 0.96636 1.20297 0.95145 1.01592 1.03675 1.19087 0.92579 0.87268 0.90111 1.84009 1.29021 1.39470 1.55240 1.21287 0.80699 1.19122 1.25658 0.89319 1.25267 1.00117 0.95472 0.95538 1.70037 1.32984 1.19034 1.27647 0.85732 0.80547 0.79001 0.78275 1.19790 1.20182 1.19252 1.21169 1.01302 0.98373 1.04663 0.92061 0.91660 0.91867 0.88984 0.88898 0.90749 0.89079 0.90203 0.91048 0.91209 0.90682 0.89575 0.89847 0.86871 0.86207 0.86010 0.92015 0.85262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.32 9.20 37.16 0.34 -0.98 16 2 C -0.13 -1.13 4.77 -27.88 -0.13 -1.26 16 3 C 0.50 6.59 7.43 -10.98 -0.08 6.51 16 4 O -0.50 -9.15 11.76 -21.66 -0.25 -9.40 16 5 N -0.61 -6.64 2.97 -166.53 -0.49 -7.13 16 6 C 0.11 0.66 6.34 -3.71 -0.02 0.64 16 7 C -0.14 -0.77 6.08 -26.61 -0.16 -0.94 16 8 C -0.12 -0.80 5.88 -26.69 -0.16 -0.96 16 9 C -0.13 -1.40 5.31 -26.61 -0.14 -1.54 16 10 C 0.16 2.06 3.35 -68.75 -0.23 1.83 16 11 H 0.10 1.12 8.14 -51.93 -0.42 0.69 16 12 C 0.47 9.00 4.34 36.01 0.16 9.16 16 13 O -0.47 -10.73 14.39 -26.87 -0.39 -11.12 16 14 O -0.30 -6.20 10.02 -26.26 -0.26 -6.46 16 15 C 0.13 3.04 4.98 -39.24 -0.20 2.85 16 16 C -0.20 -4.18 9.99 -39.38 -0.39 -4.57 16 17 C -0.07 -1.37 10.03 -39.63 -0.40 -1.77 16 18 C -0.19 -4.31 9.99 -39.37 -0.39 -4.70 16 19 C 0.16 4.30 6.65 -39.13 -0.26 4.04 16 20 O -0.17 -5.22 9.76 0.08 0.00 -5.22 16 21 C -0.39 -11.46 9.45 30.88 0.29 -11.17 16 22 H 0.09 2.44 5.28 -52.49 -0.28 2.17 16 23 C 0.04 1.14 5.49 -17.52 -0.10 1.05 16 24 N -0.86 -25.94 13.67 55.48 0.76 -25.18 16 25 Si 0.94 21.13 29.55 -169.99 -5.02 16.11 16 26 H -0.27 -5.92 7.11 56.52 0.40 -5.51 16 27 H -0.28 -6.06 7.11 56.52 0.40 -5.65 16 28 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 29 C -0.24 -5.87 8.97 -39.25 -0.35 -6.22 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.77 8.10 -51.93 -0.42 0.35 16 32 H 0.06 0.67 8.10 -51.93 -0.42 0.25 16 33 H 0.09 0.51 7.74 -51.93 -0.40 0.11 16 34 H 0.09 0.61 7.90 -51.93 -0.41 0.20 16 35 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 36 H 0.09 0.35 5.94 -51.93 -0.31 0.04 16 37 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 38 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 41 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.08 1.08 7.90 -51.93 -0.41 0.67 16 43 H 0.11 2.24 8.06 -52.49 -0.42 1.82 16 44 H 0.12 1.96 8.06 -52.48 -0.42 1.54 16 45 H 0.12 2.61 8.06 -52.49 -0.42 2.18 16 46 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 47 H 0.13 3.25 5.70 -52.49 -0.30 2.95 16 LS Contribution 385.96 15.07 5.82 5.82 Total: -1.00 -37.98 385.96 -8.81 -46.79 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: -6.73 Total: 3.84 kcal Atomic # 6 Polarization: -5.82 SS G_CDS: -2.23 Total: -8.05 kcal Atomic # 7 Polarization: -32.58 SS G_CDS: 0.26 Total: -32.31 kcal Atomic # 8 Polarization: -31.29 SS G_CDS: -0.90 Total: -32.20 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -37.98 -8.81 -46.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841342951.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.518 kcal (2) G-P(sol) polarization free energy of solvation -37.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds