Wall clock time and date at job start Wed Apr 1 2020 05:16:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50703 * 109.46654 * 2 1 4 4 O 1.21280 * 120.00488 * 0.02562 * 3 2 1 5 5 N 1.34782 * 119.99622 * 179.97438 * 3 2 1 6 6 C 1.46923 * 120.63245 * 5.08142 * 5 3 2 7 7 C 1.53191 * 108.77959 * 233.61264 * 6 5 3 8 8 C 1.53048 * 109.30700 * 305.36417 * 7 6 5 9 9 C 1.53034 * 109.53829 * 61.36584 * 8 7 6 10 10 C 1.46921 * 120.63016 * 185.08431 * 5 3 2 11 11 H 1.09002 * 109.70671 * 246.24736 * 10 5 3 12 12 C 1.50707 * 109.58752 * 6.60418 * 10 5 3 13 13 O 1.20819 * 120.00261 * 63.09143 * 12 10 5 14 14 O 1.34269 * 119.99459 * 243.09245 * 12 10 5 15 15 C 1.35927 * 116.99542 * 185.35949 * 14 12 10 16 16 C 1.38827 * 120.02029 * 260.04842 * 15 14 12 17 17 C 1.38186 * 120.07946 * 179.97438 * 16 15 14 18 18 C 1.38149 * 120.12606 * 0.02562 * 17 16 15 19 19 C 1.38896 * 120.04454 * 359.97438 * 18 17 16 20 20 O 1.35746 * 120.04551 * 179.97438 * 19 18 17 21 21 C 1.34824 * 117.00091 * 185.52998 * 20 19 18 22 22 H 1.08001 * 119.99779 * 4.80556 * 21 20 19 23 23 C 1.38651 * 119.99889 * 184.80789 * 21 20 19 24 24 N 1.31556 * 120.00301 * 359.97438 * 23 21 20 25 25 Si 1.86806 * 119.99836 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.47006 * 90.00126 * 25 23 21 27 27 H 1.48500 * 109.47211 * 209.99764 * 25 23 21 28 28 H 1.48504 * 109.47359 * 329.99878 * 25 23 21 29 29 C 1.38572 * 120.02062 * 80.02408 * 15 14 12 30 30 H 1.09005 * 109.46906 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.47281 * 299.99793 * 1 2 3 32 32 H 1.08998 * 109.47178 * 59.99933 * 1 2 3 33 33 H 1.08998 * 109.47161 * 240.00547 * 2 1 3 34 34 H 1.08998 * 109.47178 * 120.00067 * 2 1 3 35 35 H 1.08998 * 109.58915 * 113.82007 * 6 5 3 36 36 H 1.09006 * 109.70249 * 353.46424 * 6 5 3 37 37 H 1.08994 * 109.50229 * 185.41774 * 7 6 5 38 38 H 1.08992 * 109.49844 * 65.31304 * 7 6 5 39 39 H 1.08999 * 109.45790 * 301.34128 * 8 7 6 40 40 H 1.08997 * 109.45664 * 181.38795 * 8 7 6 41 41 H 1.09004 * 109.49486 * 178.68038 * 9 8 7 42 42 H 1.09000 * 109.50201 * 58.58661 * 9 8 7 43 43 H 1.07998 * 119.96046 * 359.96160 * 16 15 14 44 44 H 1.08004 * 119.93666 * 180.02562 * 17 16 15 45 45 H 1.08001 * 119.97863 * 180.27849 * 18 17 16 46 46 H 0.97001 * 120.00281 * 180.02562 * 24 23 21 47 47 H 1.08000 * 120.06131 * 0.02562 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2441 2.3427 0.0005 5 7 3.3574 1.6672 0.0005 6 6 4.3236 0.5660 -0.1109 7 6 5.3143 0.6594 1.0538 8 6 5.9480 2.0525 1.0685 9 6 4.8591 3.1079 1.2747 10 6 3.8632 3.0420 0.1126 11 1 4.3629 3.3264 -0.8135 12 6 2.7156 3.9826 0.3768 13 8 2.0696 3.8772 1.3923 14 8 2.4112 4.9377 -0.5165 15 6 1.4395 5.8217 -0.1675 16 6 0.1481 5.6612 -0.6512 17 6 -0.8408 6.5589 -0.2967 18 6 -0.5478 7.6190 0.5393 19 6 0.7425 7.7845 1.0262 20 8 1.0305 8.8264 1.8473 21 6 2.3231 8.9953 2.1915 22 1 3.0847 8.3657 1.7555 23 6 2.6746 9.9771 3.1052 24 7 1.7470 10.7443 3.6360 25 14 4.4655 10.2106 3.5827 26 1 5.0994 11.1890 2.6630 27 1 4.5442 10.7181 4.9760 28 1 5.1765 8.9102 3.4886 29 6 1.7371 6.8835 0.6717 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5137 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 4.8614 0.6459 -1.0555 36 1 3.7991 -0.3887 -0.0686 37 1 6.0931 -0.0931 0.9303 38 1 4.7886 0.4890 1.9932 39 1 6.4526 2.2319 0.1191 40 1 6.6716 2.1136 1.8813 41 1 5.3139 4.0979 1.3085 42 1 4.3377 2.9144 2.2121 43 1 -0.0838 4.8338 -1.3054 44 1 -1.8448 6.4316 -0.6740 45 1 -1.3235 8.3166 0.8184 46 1 1.9930 11.4314 4.2749 47 1 2.7411 7.0100 1.0490 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000841342951.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:16:47 Heat of formation + Delta-G solvation = -129.939396 kcal Electronic energy + Delta-G solvation = -31554.807278 eV Core-core repulsion = 27282.200057 eV Total energy + Delta-G solvation = -4272.607221 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.65553 -41.32952 -40.38009 -38.75962 -38.27856 -37.29653 -34.39912 -34.36602 -33.58556 -32.50384 -31.37255 -30.63746 -27.68235 -27.34052 -25.62781 -25.17641 -23.81960 -23.39881 -22.01440 -21.79628 -20.13117 -19.97072 -19.62736 -18.79065 -17.98824 -17.70373 -17.16699 -16.93561 -16.89125 -16.64069 -16.08966 -15.75090 -15.65131 -15.48770 -15.22757 -15.08687 -14.83012 -14.58597 -14.52326 -14.46052 -13.97667 -13.82164 -13.62686 -13.13342 -13.10691 -12.99768 -12.76510 -12.68694 -12.66534 -12.52625 -12.19214 -12.19098 -12.08987 -11.88046 -11.81431 -11.68955 -11.61360 -11.36429 -10.87706 -10.75097 -9.86266 -9.81648 -9.19666 -8.55234 -6.25096 0.10950 0.50316 1.05289 1.28565 1.38578 1.46992 1.49301 1.67122 1.99106 2.11573 2.69336 3.02633 3.29650 3.40110 3.63656 3.67140 3.73577 3.93397 3.95469 4.04751 4.10649 4.12307 4.13362 4.21474 4.27454 4.41233 4.48883 4.61179 4.65685 4.72187 4.74935 4.80524 4.87480 4.92064 4.98542 4.99479 5.00668 5.07651 5.16996 5.29272 5.36123 5.37870 5.41003 5.42257 5.46607 5.56464 5.90799 5.98790 6.22888 6.82290 6.87881 7.07359 7.62475 8.67380 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.011632 B = 0.003480 C = 0.002817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2406.558651 B = 8043.531235 C = 9935.832103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.125 4.125 3 C 0.487 3.513 4 O -0.561 6.561 5 N -0.605 5.605 6 C 0.103 3.897 7 C -0.136 4.136 8 C -0.110 4.110 9 C -0.126 4.126 10 C 0.162 3.838 11 H 0.126 0.874 12 C 0.468 3.532 13 O -0.519 6.519 14 O -0.304 6.304 15 C 0.127 3.873 16 C -0.189 4.189 17 C -0.050 4.050 18 C -0.195 4.195 19 C 0.131 3.869 20 O -0.219 6.219 21 C -0.421 4.421 22 H 0.092 0.908 23 C -0.017 4.017 24 N -0.914 5.914 25 Si 1.018 2.982 26 H -0.256 1.256 27 H -0.265 1.265 28 H -0.258 1.258 29 C -0.251 4.251 30 H 0.092 0.908 31 H 0.030 0.970 32 H 0.045 0.955 33 H 0.133 0.867 34 H 0.118 0.882 35 H 0.100 0.900 36 H 0.121 0.879 37 H 0.115 0.885 38 H 0.057 0.943 39 H 0.090 0.910 40 H 0.084 0.916 41 H 0.078 0.922 42 H 0.053 0.947 43 H 0.134 0.866 44 H 0.171 0.829 45 H 0.134 0.866 46 H 0.276 0.724 47 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.241 -27.884 -10.336 31.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.164 4.164 3 C 0.277 3.723 4 O -0.440 6.440 5 N -0.343 5.343 6 C -0.017 4.017 7 C -0.174 4.174 8 C -0.147 4.147 9 C -0.165 4.165 10 C 0.057 3.943 11 H 0.143 0.857 12 C 0.314 3.686 13 O -0.405 6.405 14 O -0.220 6.220 15 C 0.086 3.914 16 C -0.208 4.208 17 C -0.067 4.067 18 C -0.214 4.214 19 C 0.080 3.920 20 O -0.125 6.125 21 C -0.497 4.497 22 H 0.109 0.891 23 C -0.215 4.215 24 N -0.551 5.551 25 Si 0.836 3.164 26 H -0.180 1.180 27 H -0.189 1.189 28 H -0.182 1.182 29 C -0.271 4.271 30 H 0.111 0.889 31 H 0.050 0.950 32 H 0.064 0.936 33 H 0.150 0.850 34 H 0.136 0.864 35 H 0.118 0.882 36 H 0.139 0.861 37 H 0.133 0.867 38 H 0.075 0.925 39 H 0.109 0.891 40 H 0.102 0.898 41 H 0.096 0.904 42 H 0.072 0.928 43 H 0.152 0.848 44 H 0.189 0.811 45 H 0.152 0.848 46 H 0.085 0.915 47 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 9.439 -27.106 -9.774 30.321 hybrid contribution 0.252 1.002 0.700 1.248 sum 9.691 -26.104 -9.074 29.285 Atomic orbital electron populations 1.21547 0.94041 1.02699 1.01292 1.21693 0.97618 0.90143 1.06926 1.22041 0.81637 0.93970 0.74619 1.90786 1.55613 1.46974 1.50621 1.48373 1.06425 1.05848 1.73613 1.22288 0.90321 0.88648 1.00438 1.21997 0.99361 0.97684 0.98335 1.21534 0.95823 0.93037 1.04351 1.21971 0.96387 1.02530 0.95582 1.20838 0.89188 0.81025 1.03214 0.85678 1.24088 0.84274 0.79343 0.80936 1.90646 1.50253 1.69868 1.29706 1.84426 1.52143 1.39077 1.46355 1.18289 0.88107 0.88253 0.96783 1.20976 0.90843 1.02680 1.06265 1.21012 0.99872 0.91371 0.94476 1.20652 0.94133 1.02751 1.03845 1.19622 0.94366 0.87419 0.90589 1.83967 1.29520 1.41619 1.57367 1.21730 0.81007 1.20149 1.26811 0.89069 1.26607 1.05697 0.94442 0.94761 1.70165 1.35844 1.20191 1.28886 0.84627 0.73700 0.79584 0.78514 1.18046 1.18889 1.18172 1.21141 1.00590 0.99411 1.05935 0.88878 0.95041 0.93625 0.84954 0.86421 0.88177 0.86148 0.86718 0.92458 0.89130 0.89780 0.90357 0.92797 0.84797 0.81131 0.84774 0.91466 0.86777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.46 9.20 71.98 0.66 -1.80 16 2 C -0.12 -1.70 4.77 29.85 0.14 -1.56 16 3 C 0.49 12.20 7.43 87.66 0.65 12.85 16 4 O -0.56 -21.12 11.76 23.00 0.27 -20.85 16 5 N -0.61 -11.89 2.97 -799.17 -2.38 -14.26 16 6 C 0.10 0.74 6.34 86.36 0.55 1.29 16 7 C -0.14 -0.95 6.08 30.67 0.19 -0.76 16 8 C -0.11 -1.19 5.88 30.62 0.18 -1.01 16 9 C -0.13 -2.72 5.31 30.67 0.16 -2.56 16 10 C 0.16 4.09 3.35 44.23 0.15 4.24 16 11 H 0.13 2.53 8.14 -2.39 -0.02 2.51 16 12 C 0.47 18.46 4.34 71.24 0.31 18.77 16 13 O -0.52 -24.94 14.39 29.76 0.43 -24.52 16 14 O -0.30 -12.98 10.02 6.97 0.07 -12.91 16 15 C 0.13 6.00 4.98 22.49 0.11 6.11 16 16 C -0.19 -8.00 9.99 22.40 0.22 -7.78 16 17 C -0.05 -1.95 10.03 22.24 0.22 -1.73 16 18 C -0.19 -9.13 9.99 22.41 0.22 -8.91 16 19 C 0.13 7.31 6.65 22.56 0.15 7.46 16 20 O -0.22 -14.04 9.76 -22.64 -0.22 -14.26 16 21 C -0.42 -26.22 9.45 67.92 0.64 -25.58 16 22 H 0.09 5.39 5.28 -2.91 -0.02 5.38 16 23 C -0.02 -0.99 5.49 84.83 0.47 -0.52 16 24 N -0.91 -57.55 13.67 21.61 0.30 -57.26 16 25 Si 1.02 44.52 29.55 68.60 2.03 46.55 16 26 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 27 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 28 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 29 C -0.25 -13.31 8.97 22.49 0.20 -13.11 16 30 H 0.09 1.02 8.14 -2.38 -0.02 1.00 16 31 H 0.03 0.75 8.10 -2.38 -0.02 0.73 16 32 H 0.04 0.95 8.10 -2.39 -0.02 0.93 16 33 H 0.13 0.77 7.74 -2.39 -0.02 0.75 16 34 H 0.12 1.06 7.90 -2.39 -0.02 1.05 16 35 H 0.10 0.31 8.14 -2.39 -0.02 0.30 16 36 H 0.12 0.21 5.94 -2.38 -0.01 0.20 16 37 H 0.11 0.12 8.14 -2.39 -0.02 0.10 16 38 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 39 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 40 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 42 H 0.05 1.47 7.90 -2.39 -0.02 1.45 16 43 H 0.13 5.14 8.06 -2.91 -0.02 5.12 16 44 H 0.17 4.98 8.06 -2.91 -0.02 4.96 16 45 H 0.13 5.85 8.06 -2.91 -0.02 5.83 16 46 H 0.28 15.79 8.31 -92.71 -0.77 15.02 16 47 H 0.11 6.23 5.70 -2.91 -0.02 6.21 16 Total: -1.00 -93.49 385.96 6.71 -86.78 By element: Atomic # 1 Polarization: 24.33 SS G_CDS: 0.98 Total: 25.31 kcal Atomic # 6 Polarization: -19.80 SS G_CDS: 5.23 Total: -14.57 kcal Atomic # 7 Polarization: -69.44 SS G_CDS: -2.08 Total: -71.52 kcal Atomic # 8 Polarization: -73.09 SS G_CDS: 0.55 Total: -72.54 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Total: -93.49 6.71 -86.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841342951.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.163 kcal (2) G-P(sol) polarization free energy of solvation -93.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds