Wall clock time and date at job start Wed Apr 1 2020 04:06:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.50696 * 120.00471 * 2 1 4 4 C 1.31005 * 119.99776 * 180.02562 * 2 1 3 5 5 C 1.50702 * 119.99932 * 180.27660 * 4 2 1 6 6 O 1.42898 * 109.47187 * 134.72178 * 5 4 2 7 7 C 1.35894 * 117.00083 * 180.02562 * 6 5 4 8 8 C 1.38757 * 120.05480 * 359.72250 * 7 6 5 9 9 C 1.38127 * 119.94299 * 179.70147 * 8 7 6 10 10 C 1.38290 * 120.05518 * 0.60117 * 9 8 7 11 11 C 1.38242 * 120.11073 * 359.67159 * 10 9 8 12 12 C 1.50700 * 119.97133 * 180.02562 * 11 10 9 13 13 C 1.50706 * 109.47169 * 269.98049 * 12 11 10 14 14 O 1.20830 * 119.99411 * 0.02562 * 13 12 11 15 15 O 1.34230 * 120.00018 * 180.02562 * 13 12 11 16 16 C 1.45195 * 116.99766 * 180.02562 * 15 13 12 17 17 C 1.50696 * 109.46989 * 179.97438 * 16 15 13 18 18 O 1.21290 * 120.00112 * 359.97438 * 17 16 15 19 19 N 1.34778 * 119.99957 * 180.02562 * 17 16 15 20 20 C 1.37103 * 119.99977 * 180.02562 * 19 17 16 21 21 H 1.08001 * 120.00096 * 359.97438 * 20 19 17 22 22 C 1.38947 * 120.00272 * 180.02562 * 20 19 17 23 23 N 1.31411 * 120.00380 * 179.97438 * 22 20 19 24 24 Si 1.86809 * 119.99790 * 359.97438 * 22 20 19 25 25 H 1.48495 * 109.47087 * 90.00187 * 24 22 20 26 26 H 1.48502 * 109.46877 * 210.00795 * 24 22 20 27 27 H 1.48504 * 109.46785 * 330.00312 * 24 22 20 28 28 C 1.38170 * 120.05474 * 0.03026 * 11 10 9 29 29 H 1.09002 * 109.47103 * 270.00327 * 1 2 3 30 30 H 1.09001 * 109.47119 * 29.99615 * 1 2 3 31 31 H 1.08996 * 109.47258 * 149.99784 * 1 2 3 32 32 H 1.08996 * 109.47244 * 240.00581 * 3 2 1 33 33 H 1.09001 * 109.46948 * 359.97438 * 3 2 1 34 34 H 1.09000 * 109.47319 * 119.99462 * 3 2 1 35 35 H 1.08002 * 119.99708 * 359.97438 * 4 2 1 36 36 H 1.08995 * 109.46783 * 254.71908 * 5 4 2 37 37 H 1.08998 * 109.46963 * 14.72110 * 5 4 2 38 38 H 1.07999 * 120.02801 * 359.97438 * 8 7 6 39 39 H 1.08000 * 119.97214 * 180.29951 * 9 8 7 40 40 H 1.08001 * 119.94336 * 179.70586 * 10 9 8 41 41 H 1.08999 * 109.47161 * 29.97938 * 12 11 10 42 42 H 1.08997 * 109.47211 * 149.98340 * 12 11 10 43 43 H 1.09001 * 109.47633 * 300.00060 * 16 15 13 44 44 H 1.09006 * 109.47524 * 59.99995 * 16 15 13 45 45 H 0.96993 * 120.00508 * 359.97438 * 19 17 16 46 46 H 0.96993 * 119.99916 * 179.97438 * 23 22 20 47 47 H 1.08002 * 120.02540 * 180.02562 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2606 1.3050 0.0000 4 6 2.1620 -1.1346 -0.0005 5 6 3.6690 -1.1346 0.0058 6 8 4.1413 -2.0854 0.9623 7 6 5.4880 -2.2107 1.0945 8 6 6.3376 -1.4385 0.3152 9 6 7.7060 -1.5633 0.4558 10 6 8.2295 -2.4658 1.3635 11 6 7.3852 -3.2404 2.1370 12 6 7.9591 -4.2225 3.1255 13 6 8.1546 -5.5566 2.4524 14 8 7.8588 -5.6954 1.2891 15 8 8.6575 -6.5906 3.1451 16 6 8.8189 -7.8452 2.4323 17 6 9.3922 -8.8818 3.3638 18 8 9.6407 -8.5917 4.5150 19 7 9.6297 -10.1312 2.9174 20 6 10.1508 -11.0745 3.7650 21 1 10.3713 -10.8163 4.7903 22 6 10.3962 -12.3623 3.3048 23 7 10.8961 -13.2663 4.1170 24 14 10.0155 -12.8087 1.5312 25 1 11.2092 -12.5468 0.6877 26 1 9.6570 -14.2475 1.4489 27 1 8.8774 -11.9866 1.0473 28 6 6.0156 -3.1148 2.0045 29 1 -0.3633 0.0001 1.0277 30 1 -0.3633 0.8900 -0.5138 31 1 -0.3633 -0.8899 -0.5138 32 1 2.8871 1.3628 -0.8900 33 1 1.5523 2.1335 -0.0005 34 1 2.8872 1.3628 0.8900 35 1 1.6219 -2.0698 -0.0005 36 1 4.0364 -1.4026 -0.9848 37 1 4.0312 -0.1415 0.2713 38 1 5.9292 -0.7373 -0.3975 39 1 8.3677 -0.9590 -0.1470 40 1 9.2998 -2.5653 1.4685 41 1 8.9188 -3.8543 3.4880 42 1 7.2730 -4.3362 3.9648 43 1 7.8494 -8.1822 2.0656 44 1 9.4955 -7.7002 1.5901 45 1 9.4314 -10.3632 1.9968 46 1 11.0670 -14.1654 3.7958 47 1 5.3564 -3.7199 2.6093 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000842113887.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:06:24 Heat of formation + Delta-G solvation = -119.520238 kcal Electronic energy + Delta-G solvation = -28279.264649 eV Core-core repulsion = 24007.109237 eV Total energy + Delta-G solvation = -4272.155412 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.73200 -40.15937 -38.48723 -38.04933 -36.72261 -36.09080 -34.04482 -33.00183 -31.78472 -31.08820 -29.36204 -29.08736 -28.29048 -27.64122 -24.91922 -24.39987 -22.85564 -22.04387 -20.55097 -19.62456 -18.68380 -18.56749 -17.92604 -17.63934 -16.73591 -16.52508 -16.33021 -16.18726 -16.04626 -15.48134 -14.88597 -14.82507 -14.68008 -14.54490 -14.36968 -14.08731 -13.62624 -13.51985 -13.17948 -13.02441 -12.93853 -12.70468 -12.65768 -12.41992 -12.23511 -12.17317 -12.11570 -12.04139 -11.78472 -11.58416 -11.28711 -11.25214 -11.02402 -10.63884 -10.49005 -10.46127 -10.03750 -9.66208 -9.35329 -9.11653 -8.64684 -8.42091 -8.27859 -6.37988 -3.90821 0.98826 1.23215 1.46978 2.28195 2.67236 3.00097 3.01306 3.04664 3.13183 3.56809 3.57521 4.05066 4.21534 4.35060 4.38120 4.47166 4.53620 4.65561 4.72324 4.77599 4.83118 4.92343 4.98323 5.02500 5.08393 5.11563 5.12795 5.19226 5.22346 5.30170 5.35653 5.39241 5.40570 5.44650 5.52979 5.57622 5.69848 5.76646 6.02821 6.07097 6.16561 6.26982 6.32460 6.47453 6.57766 7.15177 7.46374 7.84418 8.02591 8.49429 8.85137 9.31430 9.67365 10.74328 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.018116 B = 0.001581 C = 0.001518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.207109 B =17706.027938 C =18443.174333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.112 4.112 3 C -0.127 4.127 4 C -0.170 4.170 5 C 0.089 3.911 6 O -0.311 6.311 7 C 0.130 3.870 8 C -0.207 4.207 9 C -0.079 4.079 10 C -0.139 4.139 11 C -0.034 4.034 12 C -0.074 4.074 13 C 0.460 3.540 14 O -0.506 6.506 15 O -0.325 6.325 16 C 0.058 3.942 17 C 0.448 3.552 18 O -0.557 6.557 19 N -0.580 5.580 20 C -0.308 4.308 21 H 0.122 0.878 22 C 0.046 3.954 23 N -0.875 5.875 24 Si 0.878 3.122 25 H -0.269 1.269 26 H -0.274 1.274 27 H -0.268 1.268 28 C -0.134 4.134 29 H 0.072 0.928 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.071 0.929 35 H 0.121 0.879 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.125 0.875 39 H 0.126 0.874 40 H 0.125 0.875 41 H 0.120 0.880 42 H 0.119 0.881 43 H 0.087 0.913 44 H 0.087 0.913 45 H 0.373 0.627 46 H 0.275 0.725 47 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.690 29.771 -11.597 35.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.112 4.112 3 C -0.184 4.184 4 C -0.188 4.188 5 C 0.015 3.985 6 O -0.225 6.225 7 C 0.085 3.915 8 C -0.226 4.226 9 C -0.097 4.097 10 C -0.157 4.157 11 C -0.034 4.034 12 C -0.112 4.112 13 C 0.302 3.698 14 O -0.394 6.394 15 O -0.240 6.240 16 C -0.019 4.019 17 C 0.233 3.767 18 O -0.439 6.439 19 N -0.220 5.220 20 C -0.437 4.437 21 H 0.140 0.860 22 C -0.158 4.158 23 N -0.515 5.515 24 Si 0.704 3.296 25 H -0.194 1.194 26 H -0.200 1.200 27 H -0.194 1.194 28 C -0.152 4.152 29 H 0.090 0.910 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.089 0.911 35 H 0.139 0.861 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.143 0.857 39 H 0.144 0.856 40 H 0.143 0.857 41 H 0.138 0.862 42 H 0.137 0.863 43 H 0.105 0.895 44 H 0.105 0.895 45 H 0.206 0.794 46 H 0.086 0.914 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -15.680 29.562 -11.017 35.230 hybrid contribution -0.198 -0.604 -1.812 1.921 sum -15.878 28.957 -12.829 35.429 Atomic orbital electron populations 1.20880 0.91415 1.02721 1.02513 1.21661 0.96217 0.94751 0.98540 1.20955 1.00223 0.94937 1.02274 1.22330 0.93542 0.98553 1.04360 1.21783 0.92768 0.91954 0.92017 1.86091 1.19036 1.59002 1.58381 1.18867 0.82188 0.95271 0.95201 1.21223 0.94467 1.03677 1.03250 1.20876 0.94297 0.97406 0.97146 1.20940 0.99787 0.97582 0.97399 1.19050 0.92493 0.95529 0.96342 1.20297 1.05109 0.87833 0.97921 1.23532 0.74074 0.86461 0.85745 1.90682 1.46952 1.84146 1.17604 1.86553 1.74597 1.19393 1.43413 1.22736 1.02426 0.81908 0.94868 1.19209 0.85660 0.83064 0.88773 1.90602 1.55326 1.79502 1.18440 1.42040 1.58065 1.09428 1.12481 1.19432 1.38440 0.89210 0.96579 0.85995 1.25027 0.97035 0.95450 0.98311 1.69611 1.42466 1.04087 1.35288 0.86687 0.79081 0.79260 0.84527 1.19419 1.19951 1.19355 1.20246 0.94435 0.99975 1.00559 0.90955 0.91620 0.91543 0.91332 0.91563 0.91076 0.86149 0.91210 0.91215 0.85667 0.85618 0.85668 0.86159 0.86263 0.89456 0.89458 0.79395 0.91405 0.85083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.54 9.97 36.01 0.36 -0.18 16 2 C -0.11 -0.66 6.05 -101.07 -0.61 -1.27 16 3 C -0.13 -0.58 8.58 36.00 0.31 -0.27 16 4 C -0.17 -1.23 9.48 -36.03 -0.34 -1.57 16 5 C 0.09 0.69 4.87 36.01 0.18 0.87 16 6 O -0.31 -3.39 10.12 -19.41 -0.20 -3.59 16 7 C 0.13 1.45 6.69 -39.22 -0.26 1.18 16 8 C -0.21 -1.96 9.04 -39.43 -0.36 -2.32 16 9 C -0.08 -0.73 10.04 -39.60 -0.40 -1.12 16 10 C -0.14 -1.41 9.70 -39.56 -0.38 -1.79 16 11 C -0.03 -0.38 4.37 -104.65 -0.46 -0.83 16 12 C -0.07 -0.79 5.94 -29.03 -0.17 -0.96 16 13 C 0.46 6.86 7.95 36.01 0.29 7.15 16 14 O -0.51 -8.64 15.78 -18.75 -0.30 -8.93 16 15 O -0.32 -5.76 9.75 -45.90 -0.45 -6.21 16 16 C 0.06 1.06 5.94 36.00 0.21 1.27 16 17 C 0.45 10.45 7.86 -10.99 -0.09 10.36 16 18 O -0.56 -15.34 16.08 -14.11 -0.23 -15.57 16 19 N -0.58 -13.87 5.09 -10.96 -0.06 -13.93 16 20 C -0.31 -8.67 10.16 -14.93 -0.15 -8.82 16 21 H 0.12 3.90 7.39 -52.49 -0.39 3.51 16 22 C 0.05 1.24 5.50 -17.47 -0.10 1.14 16 23 N -0.88 -25.22 13.96 55.50 0.77 -24.45 16 24 Si 0.88 19.17 27.74 -169.99 -4.71 14.46 16 25 H -0.27 -5.75 7.11 56.52 0.40 -5.34 16 26 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 27 H -0.27 -5.36 6.52 56.52 0.37 -5.00 16 28 C -0.13 -1.55 9.64 -39.43 -0.38 -1.93 16 29 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.23 8.05 -51.93 -0.42 -0.19 16 31 H 0.07 0.29 8.06 -51.93 -0.42 -0.13 16 32 H 0.07 0.26 8.02 -51.93 -0.42 -0.15 16 33 H 0.07 0.24 7.94 -51.93 -0.41 -0.18 16 34 H 0.07 0.33 7.48 -51.93 -0.39 -0.05 16 35 H 0.12 0.89 8.04 -52.49 -0.42 0.47 16 36 H 0.07 0.49 7.65 -51.93 -0.40 0.09 16 37 H 0.07 0.44 5.50 -51.93 -0.29 0.16 16 38 H 0.13 0.89 6.30 -52.49 -0.33 0.56 16 39 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 40 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 41 H 0.12 1.01 8.08 -51.93 -0.42 0.59 16 42 H 0.12 1.05 8.08 -51.93 -0.42 0.63 16 43 H 0.09 1.42 8.13 -51.93 -0.42 1.00 16 44 H 0.09 1.40 8.13 -51.93 -0.42 0.98 16 45 H 0.37 7.78 5.76 -40.82 -0.24 7.55 16 46 H 0.28 7.30 8.31 -40.82 -0.34 6.97 16 47 H 0.13 1.43 8.06 -52.49 -0.42 1.00 16 LS Contribution 404.28 15.07 6.09 6.09 Total: -1.00 -35.31 404.28 -8.08 -43.39 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: -6.66 Total: 7.83 kcal Atomic # 6 Polarization: 3.26 SS G_CDS: -2.35 Total: 0.91 kcal Atomic # 7 Polarization: -39.10 SS G_CDS: 0.72 Total: -38.38 kcal Atomic # 8 Polarization: -33.14 SS G_CDS: -1.17 Total: -34.30 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -4.71 Total: 14.46 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -35.31 -8.08 -43.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842113887.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.126 kcal (2) G-P(sol) polarization free energy of solvation -35.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds