Wall clock time and date at job start Wed Apr 1 2020 04:06:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.50696 * 120.00471 * 2 1 4 4 C 1.31005 * 119.99776 * 180.02562 * 2 1 3 5 5 C 1.50702 * 119.99932 * 180.27660 * 4 2 1 6 6 O 1.42898 * 109.47187 * 134.72178 * 5 4 2 7 7 C 1.35894 * 117.00083 * 180.02562 * 6 5 4 8 8 C 1.38757 * 120.05480 * 359.72250 * 7 6 5 9 9 C 1.38127 * 119.94299 * 179.70147 * 8 7 6 10 10 C 1.38290 * 120.05518 * 0.60117 * 9 8 7 11 11 C 1.38242 * 120.11073 * 359.67159 * 10 9 8 12 12 C 1.50700 * 119.97133 * 180.02562 * 11 10 9 13 13 C 1.50706 * 109.47169 * 269.98049 * 12 11 10 14 14 O 1.20830 * 119.99411 * 0.02562 * 13 12 11 15 15 O 1.34230 * 120.00018 * 180.02562 * 13 12 11 16 16 C 1.45195 * 116.99766 * 180.02562 * 15 13 12 17 17 C 1.50696 * 109.46989 * 179.97438 * 16 15 13 18 18 O 1.21290 * 120.00112 * 359.97438 * 17 16 15 19 19 N 1.34778 * 119.99957 * 180.02562 * 17 16 15 20 20 C 1.37103 * 119.99977 * 180.02562 * 19 17 16 21 21 H 1.08001 * 120.00096 * 359.97438 * 20 19 17 22 22 C 1.38947 * 120.00272 * 180.02562 * 20 19 17 23 23 N 1.31411 * 120.00380 * 179.97438 * 22 20 19 24 24 Si 1.86809 * 119.99790 * 359.97438 * 22 20 19 25 25 H 1.48495 * 109.47087 * 90.00187 * 24 22 20 26 26 H 1.48502 * 109.46877 * 210.00795 * 24 22 20 27 27 H 1.48504 * 109.46785 * 330.00312 * 24 22 20 28 28 C 1.38170 * 120.05474 * 0.03026 * 11 10 9 29 29 H 1.09002 * 109.47103 * 270.00327 * 1 2 3 30 30 H 1.09001 * 109.47119 * 29.99615 * 1 2 3 31 31 H 1.08996 * 109.47258 * 149.99784 * 1 2 3 32 32 H 1.08996 * 109.47244 * 240.00581 * 3 2 1 33 33 H 1.09001 * 109.46948 * 359.97438 * 3 2 1 34 34 H 1.09000 * 109.47319 * 119.99462 * 3 2 1 35 35 H 1.08002 * 119.99708 * 359.97438 * 4 2 1 36 36 H 1.08995 * 109.46783 * 254.71908 * 5 4 2 37 37 H 1.08998 * 109.46963 * 14.72110 * 5 4 2 38 38 H 1.07999 * 120.02801 * 359.97438 * 8 7 6 39 39 H 1.08000 * 119.97214 * 180.29951 * 9 8 7 40 40 H 1.08001 * 119.94336 * 179.70586 * 10 9 8 41 41 H 1.08999 * 109.47161 * 29.97938 * 12 11 10 42 42 H 1.08997 * 109.47211 * 149.98340 * 12 11 10 43 43 H 1.09001 * 109.47633 * 300.00060 * 16 15 13 44 44 H 1.09006 * 109.47524 * 59.99995 * 16 15 13 45 45 H 0.96993 * 120.00508 * 359.97438 * 19 17 16 46 46 H 0.96993 * 119.99916 * 179.97438 * 23 22 20 47 47 H 1.08002 * 120.02540 * 180.02562 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2606 1.3050 0.0000 4 6 2.1620 -1.1346 -0.0005 5 6 3.6690 -1.1346 0.0058 6 8 4.1413 -2.0854 0.9623 7 6 5.4880 -2.2107 1.0945 8 6 6.3376 -1.4385 0.3152 9 6 7.7060 -1.5633 0.4558 10 6 8.2295 -2.4658 1.3635 11 6 7.3852 -3.2404 2.1370 12 6 7.9591 -4.2225 3.1255 13 6 8.1546 -5.5566 2.4524 14 8 7.8588 -5.6954 1.2891 15 8 8.6575 -6.5906 3.1451 16 6 8.8189 -7.8452 2.4323 17 6 9.3922 -8.8818 3.3638 18 8 9.6407 -8.5917 4.5150 19 7 9.6297 -10.1312 2.9174 20 6 10.1508 -11.0745 3.7650 21 1 10.3713 -10.8163 4.7903 22 6 10.3962 -12.3623 3.3048 23 7 10.8961 -13.2663 4.1170 24 14 10.0155 -12.8087 1.5312 25 1 11.2092 -12.5468 0.6877 26 1 9.6570 -14.2475 1.4489 27 1 8.8774 -11.9866 1.0473 28 6 6.0156 -3.1148 2.0045 29 1 -0.3633 0.0001 1.0277 30 1 -0.3633 0.8900 -0.5138 31 1 -0.3633 -0.8899 -0.5138 32 1 2.8871 1.3628 -0.8900 33 1 1.5523 2.1335 -0.0005 34 1 2.8872 1.3628 0.8900 35 1 1.6219 -2.0698 -0.0005 36 1 4.0364 -1.4026 -0.9848 37 1 4.0312 -0.1415 0.2713 38 1 5.9292 -0.7373 -0.3975 39 1 8.3677 -0.9590 -0.1470 40 1 9.2998 -2.5653 1.4685 41 1 8.9188 -3.8543 3.4880 42 1 7.2730 -4.3362 3.9648 43 1 7.8494 -8.1822 2.0656 44 1 9.4955 -7.7002 1.5901 45 1 9.4314 -10.3632 1.9968 46 1 11.0670 -14.1654 3.7958 47 1 5.3564 -3.7199 2.6093 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000842113887.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:06:23 Heat of formation + Delta-G solvation = -140.483347 kcal Electronic energy + Delta-G solvation = -28280.173677 eV Core-core repulsion = 24007.109237 eV Total energy + Delta-G solvation = -4273.064441 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.80339 -41.08880 -40.19225 -38.91373 -37.51844 -37.13841 -36.08552 -33.89606 -33.79454 -31.74561 -30.51319 -29.88543 -28.74617 -28.64298 -26.40657 -25.38554 -23.61228 -23.00552 -21.55520 -21.49752 -20.52286 -19.23491 -18.87772 -18.64050 -17.87353 -17.75624 -17.24250 -17.23639 -16.95538 -16.86323 -16.54411 -15.91850 -15.43698 -15.30015 -15.20172 -15.04410 -14.78371 -14.70707 -14.29382 -14.22906 -14.12362 -13.81136 -13.65981 -13.38509 -13.24912 -13.04559 -12.94953 -12.79212 -12.60995 -12.47363 -12.46723 -12.17087 -12.01472 -11.95205 -11.85642 -11.67655 -11.59547 -11.59008 -10.61286 -10.34583 -9.89632 -9.80773 -9.16827 -8.46576 -6.09699 0.20916 0.47781 0.97227 1.12867 1.29373 1.32829 1.41100 1.49201 1.75203 2.19472 2.36265 2.70208 2.93780 3.07851 3.52606 3.73614 3.78107 3.88299 3.95263 3.98997 4.05589 4.11834 4.13611 4.15563 4.21118 4.27727 4.33880 4.36689 4.50136 4.60633 4.65340 4.71973 4.74963 4.87632 4.92865 5.01749 5.07278 5.11857 5.29358 5.32091 5.44226 5.47954 5.56469 5.62034 5.76065 5.84920 5.85876 6.44942 6.46141 6.65837 6.77176 7.25169 7.76932 8.70017 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.018116 B = 0.001581 C = 0.001518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.207109 B =17706.027938 C =18443.174333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.103 4.103 3 C -0.130 4.130 4 C -0.195 4.195 5 C 0.087 3.913 6 O -0.332 6.332 7 C 0.114 3.886 8 C -0.208 4.208 9 C -0.080 4.080 10 C -0.149 4.149 11 C -0.045 4.045 12 C -0.069 4.069 13 C 0.463 3.537 14 O -0.527 6.527 15 O -0.345 6.345 16 C 0.068 3.932 17 C 0.449 3.551 18 O -0.607 6.607 19 N -0.576 5.576 20 C -0.335 4.335 21 H 0.062 0.938 22 C -0.006 4.006 23 N -0.925 5.925 24 Si 0.960 3.040 25 H -0.254 1.254 26 H -0.271 1.271 27 H -0.233 1.233 28 C -0.155 4.155 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.065 0.935 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.070 0.930 35 H 0.111 0.889 36 H 0.075 0.925 37 H 0.084 0.916 38 H 0.148 0.852 39 H 0.154 0.846 40 H 0.141 0.859 41 H 0.145 0.855 42 H 0.136 0.864 43 H 0.112 0.888 44 H 0.116 0.884 45 H 0.393 0.607 46 H 0.282 0.718 47 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.489 31.797 -14.801 38.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.103 4.103 3 C -0.187 4.187 4 C -0.213 4.213 5 C 0.013 3.987 6 O -0.246 6.246 7 C 0.069 3.931 8 C -0.226 4.226 9 C -0.098 4.098 10 C -0.167 4.167 11 C -0.046 4.046 12 C -0.106 4.106 13 C 0.307 3.693 14 O -0.416 6.416 15 O -0.260 6.260 16 C -0.009 4.009 17 C 0.236 3.764 18 O -0.492 6.492 19 N -0.218 5.218 20 C -0.463 4.463 21 H 0.080 0.920 22 C -0.206 4.206 23 N -0.564 5.564 24 Si 0.780 3.220 25 H -0.179 1.179 26 H -0.196 1.196 27 H -0.157 1.157 28 C -0.174 4.174 29 H 0.094 0.906 30 H 0.098 0.902 31 H 0.084 0.916 32 H 0.096 0.904 33 H 0.097 0.903 34 H 0.088 0.912 35 H 0.129 0.871 36 H 0.093 0.907 37 H 0.102 0.898 38 H 0.166 0.834 39 H 0.172 0.828 40 H 0.158 0.842 41 H 0.163 0.837 42 H 0.154 0.846 43 H 0.130 0.870 44 H 0.134 0.866 45 H 0.229 0.771 46 H 0.092 0.908 47 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -16.495 31.614 -14.236 38.395 hybrid contribution 0.016 -1.123 -0.725 1.337 sum -16.479 30.491 -14.961 37.751 Atomic orbital electron populations 1.20949 0.90585 1.03419 1.02898 1.21953 0.96998 0.94970 0.96353 1.21023 1.00545 0.94450 1.02636 1.22319 0.93471 0.98774 1.06761 1.21946 0.93010 0.92010 0.91685 1.86066 1.19136 1.60042 1.59377 1.19073 0.82605 0.95764 0.95675 1.21523 0.94598 1.03454 1.03039 1.21253 0.94585 0.97110 0.96840 1.21245 1.00574 0.97561 0.97302 1.19136 0.92418 0.96045 0.96971 1.20446 1.06844 0.85285 0.97976 1.24286 0.72776 0.86687 0.85544 1.90668 1.47912 1.84413 1.18628 1.86565 1.75352 1.19740 1.44370 1.22564 1.03841 0.81044 0.93487 1.20187 0.83850 0.83577 0.88829 1.90577 1.57009 1.80504 1.21119 1.41822 1.58059 1.09105 1.12831 1.19024 1.40904 0.91189 0.95231 0.92029 1.26061 0.95738 0.94370 1.04402 1.69776 1.43324 1.04869 1.38449 0.85433 0.80467 0.79353 0.76768 1.17867 1.19616 1.15678 1.20395 0.94927 1.00742 1.01335 0.90649 0.90240 0.91583 0.90394 0.90347 0.91169 0.87131 0.90710 0.89826 0.83449 0.82847 0.84160 0.83687 0.84641 0.87014 0.86645 0.77140 0.90805 0.85572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.96 9.97 71.24 0.71 -0.25 16 2 C -0.10 -1.09 6.05 -16.49 -0.10 -1.19 16 3 C -0.13 -0.93 8.58 71.23 0.61 -0.32 16 4 C -0.20 -2.76 9.48 25.64 0.24 -2.52 16 5 C 0.09 1.28 4.87 71.24 0.35 1.63 16 6 O -0.33 -7.20 10.12 -92.36 -0.93 -8.14 16 7 C 0.11 2.47 6.69 22.51 0.15 2.62 16 8 C -0.21 -3.53 9.04 22.37 0.20 -3.33 16 9 C -0.08 -1.26 10.04 22.26 0.22 -1.04 16 10 C -0.15 -2.71 9.70 22.28 0.22 -2.49 16 11 C -0.05 -0.95 4.37 -19.88 -0.09 -1.04 16 12 C -0.07 -1.35 5.94 29.10 0.17 -1.17 16 13 C 0.46 13.10 7.95 71.24 0.57 13.67 16 14 O -0.53 -17.08 15.78 21.95 0.35 -16.73 16 15 O -0.34 -11.82 9.75 -45.06 -0.44 -12.26 16 16 C 0.07 2.33 5.94 71.23 0.42 2.76 16 17 C 0.45 20.95 7.86 87.66 0.69 21.64 16 18 O -0.61 -34.65 16.08 15.74 0.25 -34.40 16 19 N -0.58 -27.40 5.09 -306.99 -1.56 -28.96 16 20 C -0.33 -19.49 10.16 84.04 0.85 -18.64 16 21 H 0.06 4.25 7.39 -2.91 -0.02 4.22 16 22 C -0.01 -0.31 5.50 84.93 0.47 0.16 16 23 N -0.92 -54.79 13.96 21.66 0.30 -54.49 16 24 Si 0.96 38.25 27.74 68.60 1.90 40.16 16 25 H -0.25 -9.59 7.11 99.48 0.71 -8.88 16 26 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 27 H -0.23 -7.94 6.52 99.48 0.65 -7.29 16 28 C -0.16 -3.55 9.64 22.37 0.22 -3.33 16 29 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.08 0.41 8.05 -2.39 -0.02 0.39 16 31 H 0.07 0.53 8.06 -2.39 -0.02 0.51 16 32 H 0.08 0.43 8.02 -2.39 -0.02 0.41 16 33 H 0.08 0.38 7.94 -2.39 -0.02 0.36 16 34 H 0.07 0.54 7.48 -2.39 -0.02 0.52 16 35 H 0.11 1.71 8.04 -2.91 -0.02 1.68 16 36 H 0.07 0.97 7.65 -2.39 -0.02 0.95 16 37 H 0.08 0.94 5.50 -2.39 -0.01 0.93 16 38 H 0.15 1.72 6.30 -2.91 -0.02 1.70 16 39 H 0.15 1.49 8.06 -2.91 -0.02 1.47 16 40 H 0.14 2.03 8.06 -2.91 -0.02 2.01 16 41 H 0.15 2.11 8.08 -2.39 -0.02 2.09 16 42 H 0.14 2.21 8.08 -2.39 -0.02 2.19 16 43 H 0.11 3.34 8.13 -2.39 -0.02 3.32 16 44 H 0.12 3.36 8.13 -2.38 -0.02 3.34 16 45 H 0.39 15.39 5.76 -92.71 -0.53 14.86 16 46 H 0.28 15.22 8.31 -92.71 -0.77 14.45 16 47 H 0.13 2.82 8.06 -2.91 -0.02 2.80 16 Total: -1.00 -81.23 404.28 6.17 -75.06 By element: Atomic # 1 Polarization: 32.21 SS G_CDS: 0.40 Total: 32.61 kcal Atomic # 6 Polarization: 1.25 SS G_CDS: 5.91 Total: 7.15 kcal Atomic # 7 Polarization: -82.19 SS G_CDS: -1.26 Total: -83.45 kcal Atomic # 8 Polarization: -70.75 SS G_CDS: -0.77 Total: -71.53 kcal Atomic # 14 Polarization: 38.25 SS G_CDS: 1.90 Total: 40.16 kcal Total: -81.23 6.17 -75.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842113887.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.427 kcal (2) G-P(sol) polarization free energy of solvation -81.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds