Wall clock time and date at job start Wed Apr 1 2020 04:06:23
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50699 * 1
3 3 C 1.50696 * 120.00471 * 2 1
4 4 C 1.31005 * 119.99776 * 180.02562 * 2 1 3
5 5 C 1.50702 * 119.99932 * 180.27660 * 4 2 1
6 6 O 1.42898 * 109.47187 * 134.72178 * 5 4 2
7 7 C 1.35894 * 117.00083 * 180.02562 * 6 5 4
8 8 C 1.38757 * 120.05480 * 359.72250 * 7 6 5
9 9 C 1.38127 * 119.94299 * 179.70147 * 8 7 6
10 10 C 1.38290 * 120.05518 * 0.60117 * 9 8 7
11 11 C 1.38242 * 120.11073 * 359.67159 * 10 9 8
12 12 C 1.50700 * 119.97133 * 180.02562 * 11 10 9
13 13 C 1.50706 * 109.47169 * 269.98049 * 12 11 10
14 14 O 1.20830 * 119.99411 * 0.02562 * 13 12 11
15 15 O 1.34230 * 120.00018 * 180.02562 * 13 12 11
16 16 C 1.45195 * 116.99766 * 180.02562 * 15 13 12
17 17 C 1.50696 * 109.46989 * 179.97438 * 16 15 13
18 18 O 1.21290 * 120.00112 * 359.97438 * 17 16 15
19 19 N 1.34778 * 119.99957 * 180.02562 * 17 16 15
20 20 C 1.37103 * 119.99977 * 180.02562 * 19 17 16
21 21 H 1.08001 * 120.00096 * 359.97438 * 20 19 17
22 22 C 1.38947 * 120.00272 * 180.02562 * 20 19 17
23 23 N 1.31411 * 120.00380 * 179.97438 * 22 20 19
24 24 Si 1.86809 * 119.99790 * 359.97438 * 22 20 19
25 25 H 1.48495 * 109.47087 * 90.00187 * 24 22 20
26 26 H 1.48502 * 109.46877 * 210.00795 * 24 22 20
27 27 H 1.48504 * 109.46785 * 330.00312 * 24 22 20
28 28 C 1.38170 * 120.05474 * 0.03026 * 11 10 9
29 29 H 1.09002 * 109.47103 * 270.00327 * 1 2 3
30 30 H 1.09001 * 109.47119 * 29.99615 * 1 2 3
31 31 H 1.08996 * 109.47258 * 149.99784 * 1 2 3
32 32 H 1.08996 * 109.47244 * 240.00581 * 3 2 1
33 33 H 1.09001 * 109.46948 * 359.97438 * 3 2 1
34 34 H 1.09000 * 109.47319 * 119.99462 * 3 2 1
35 35 H 1.08002 * 119.99708 * 359.97438 * 4 2 1
36 36 H 1.08995 * 109.46783 * 254.71908 * 5 4 2
37 37 H 1.08998 * 109.46963 * 14.72110 * 5 4 2
38 38 H 1.07999 * 120.02801 * 359.97438 * 8 7 6
39 39 H 1.08000 * 119.97214 * 180.29951 * 9 8 7
40 40 H 1.08001 * 119.94336 * 179.70586 * 10 9 8
41 41 H 1.08999 * 109.47161 * 29.97938 * 12 11 10
42 42 H 1.08997 * 109.47211 * 149.98340 * 12 11 10
43 43 H 1.09001 * 109.47633 * 300.00060 * 16 15 13
44 44 H 1.09006 * 109.47524 * 59.99995 * 16 15 13
45 45 H 0.96993 * 120.00508 * 359.97438 * 19 17 16
46 46 H 0.96993 * 119.99916 * 179.97438 * 23 22 20
47 47 H 1.08002 * 120.02540 * 180.02562 * 28 11 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.2606 1.3050 0.0000
4 6 2.1620 -1.1346 -0.0005
5 6 3.6690 -1.1346 0.0058
6 8 4.1413 -2.0854 0.9623
7 6 5.4880 -2.2107 1.0945
8 6 6.3376 -1.4385 0.3152
9 6 7.7060 -1.5633 0.4558
10 6 8.2295 -2.4658 1.3635
11 6 7.3852 -3.2404 2.1370
12 6 7.9591 -4.2225 3.1255
13 6 8.1546 -5.5566 2.4524
14 8 7.8588 -5.6954 1.2891
15 8 8.6575 -6.5906 3.1451
16 6 8.8189 -7.8452 2.4323
17 6 9.3922 -8.8818 3.3638
18 8 9.6407 -8.5917 4.5150
19 7 9.6297 -10.1312 2.9174
20 6 10.1508 -11.0745 3.7650
21 1 10.3713 -10.8163 4.7903
22 6 10.3962 -12.3623 3.3048
23 7 10.8961 -13.2663 4.1170
24 14 10.0155 -12.8087 1.5312
25 1 11.2092 -12.5468 0.6877
26 1 9.6570 -14.2475 1.4489
27 1 8.8774 -11.9866 1.0473
28 6 6.0156 -3.1148 2.0045
29 1 -0.3633 0.0001 1.0277
30 1 -0.3633 0.8900 -0.5138
31 1 -0.3633 -0.8899 -0.5138
32 1 2.8871 1.3628 -0.8900
33 1 1.5523 2.1335 -0.0005
34 1 2.8872 1.3628 0.8900
35 1 1.6219 -2.0698 -0.0005
36 1 4.0364 -1.4026 -0.9848
37 1 4.0312 -0.1415 0.2713
38 1 5.9292 -0.7373 -0.3975
39 1 8.3677 -0.9590 -0.1470
40 1 9.2998 -2.5653 1.4685
41 1 8.9188 -3.8543 3.4880
42 1 7.2730 -4.3362 3.9648
43 1 7.8494 -8.1822 2.0656
44 1 9.4955 -7.7002 1.5901
45 1 9.4314 -10.3632 1.9968
46 1 11.0670 -14.1654 3.7958
47 1 5.3564 -3.7199 2.6093
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000842113887.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:06:23
Heat of formation + Delta-G solvation = -140.483347 kcal
Electronic energy + Delta-G solvation = -28280.173677 eV
Core-core repulsion = 24007.109237 eV
Total energy + Delta-G solvation = -4273.064441 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 347.161 amu
Computer time = 0.87 seconds
Orbital eigenvalues (eV)
-41.80339 -41.08880 -40.19225 -38.91373 -37.51844 -37.13841 -36.08552 -33.89606
-33.79454 -31.74561 -30.51319 -29.88543 -28.74617 -28.64298 -26.40657 -25.38554
-23.61228 -23.00552 -21.55520 -21.49752 -20.52286 -19.23491 -18.87772 -18.64050
-17.87353 -17.75624 -17.24250 -17.23639 -16.95538 -16.86323 -16.54411 -15.91850
-15.43698 -15.30015 -15.20172 -15.04410 -14.78371 -14.70707 -14.29382 -14.22906
-14.12362 -13.81136 -13.65981 -13.38509 -13.24912 -13.04559 -12.94953 -12.79212
-12.60995 -12.47363 -12.46723 -12.17087 -12.01472 -11.95205 -11.85642 -11.67655
-11.59547 -11.59008 -10.61286 -10.34583 -9.89632 -9.80773 -9.16827 -8.46576
-6.09699 0.20916 0.47781 0.97227 1.12867 1.29373 1.32829 1.41100
1.49201 1.75203 2.19472 2.36265 2.70208 2.93780 3.07851 3.52606
3.73614 3.78107 3.88299 3.95263 3.98997 4.05589 4.11834 4.13611
4.15563 4.21118 4.27727 4.33880 4.36689 4.50136 4.60633 4.65340
4.71973 4.74963 4.87632 4.92865 5.01749 5.07278 5.11857 5.29358
5.32091 5.44226 5.47954 5.56469 5.62034 5.76065 5.84920 5.85876
6.44942 6.46141 6.65837 6.77176 7.25169 7.76932 8.70017
Molecular weight = 347.16amu
Principal moments of inertia in cm(-1)
A = 0.018116 B = 0.001581 C = 0.001518
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1545.207109 B =17706.027938 C =18443.174333
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.122 4.122
2 C -0.103 4.103
3 C -0.130 4.130
4 C -0.195 4.195
5 C 0.087 3.913
6 O -0.332 6.332
7 C 0.114 3.886
8 C -0.208 4.208
9 C -0.080 4.080
10 C -0.149 4.149
11 C -0.045 4.045
12 C -0.069 4.069
13 C 0.463 3.537
14 O -0.527 6.527
15 O -0.345 6.345
16 C 0.068 3.932
17 C 0.449 3.551
18 O -0.607 6.607
19 N -0.576 5.576
20 C -0.335 4.335
21 H 0.062 0.938
22 C -0.006 4.006
23 N -0.925 5.925
24 Si 0.960 3.040
25 H -0.254 1.254
26 H -0.271 1.271
27 H -0.233 1.233
28 C -0.155 4.155
29 H 0.075 0.925
30 H 0.079 0.921
31 H 0.065 0.935
32 H 0.077 0.923
33 H 0.078 0.922
34 H 0.070 0.930
35 H 0.111 0.889
36 H 0.075 0.925
37 H 0.084 0.916
38 H 0.148 0.852
39 H 0.154 0.846
40 H 0.141 0.859
41 H 0.145 0.855
42 H 0.136 0.864
43 H 0.112 0.888
44 H 0.116 0.884
45 H 0.393 0.607
46 H 0.282 0.718
47 H 0.126 0.874
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -16.489 31.797 -14.801 38.756
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.179 4.179
2 C -0.103 4.103
3 C -0.187 4.187
4 C -0.213 4.213
5 C 0.013 3.987
6 O -0.246 6.246
7 C 0.069 3.931
8 C -0.226 4.226
9 C -0.098 4.098
10 C -0.167 4.167
11 C -0.046 4.046
12 C -0.106 4.106
13 C 0.307 3.693
14 O -0.416 6.416
15 O -0.260 6.260
16 C -0.009 4.009
17 C 0.236 3.764
18 O -0.492 6.492
19 N -0.218 5.218
20 C -0.463 4.463
21 H 0.080 0.920
22 C -0.206 4.206
23 N -0.564 5.564
24 Si 0.780 3.220
25 H -0.179 1.179
26 H -0.196 1.196
27 H -0.157 1.157
28 C -0.174 4.174
29 H 0.094 0.906
30 H 0.098 0.902
31 H 0.084 0.916
32 H 0.096 0.904
33 H 0.097 0.903
34 H 0.088 0.912
35 H 0.129 0.871
36 H 0.093 0.907
37 H 0.102 0.898
38 H 0.166 0.834
39 H 0.172 0.828
40 H 0.158 0.842
41 H 0.163 0.837
42 H 0.154 0.846
43 H 0.130 0.870
44 H 0.134 0.866
45 H 0.229 0.771
46 H 0.092 0.908
47 H 0.144 0.856
Dipole moment (debyes) X Y Z Total
from point charges -16.495 31.614 -14.236 38.395
hybrid contribution 0.016 -1.123 -0.725 1.337
sum -16.479 30.491 -14.961 37.751
Atomic orbital electron populations
1.20949 0.90585 1.03419 1.02898 1.21953 0.96998 0.94970 0.96353
1.21023 1.00545 0.94450 1.02636 1.22319 0.93471 0.98774 1.06761
1.21946 0.93010 0.92010 0.91685 1.86066 1.19136 1.60042 1.59377
1.19073 0.82605 0.95764 0.95675 1.21523 0.94598 1.03454 1.03039
1.21253 0.94585 0.97110 0.96840 1.21245 1.00574 0.97561 0.97302
1.19136 0.92418 0.96045 0.96971 1.20446 1.06844 0.85285 0.97976
1.24286 0.72776 0.86687 0.85544 1.90668 1.47912 1.84413 1.18628
1.86565 1.75352 1.19740 1.44370 1.22564 1.03841 0.81044 0.93487
1.20187 0.83850 0.83577 0.88829 1.90577 1.57009 1.80504 1.21119
1.41822 1.58059 1.09105 1.12831 1.19024 1.40904 0.91189 0.95231
0.92029 1.26061 0.95738 0.94370 1.04402 1.69776 1.43324 1.04869
1.38449 0.85433 0.80467 0.79353 0.76768 1.17867 1.19616 1.15678
1.20395 0.94927 1.00742 1.01335 0.90649 0.90240 0.91583 0.90394
0.90347 0.91169 0.87131 0.90710 0.89826 0.83449 0.82847 0.84160
0.83687 0.84641 0.87014 0.86645 0.77140 0.90805 0.85572
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -0.96 9.97 71.24 0.71 -0.25 16
2 C -0.10 -1.09 6.05 -16.49 -0.10 -1.19 16
3 C -0.13 -0.93 8.58 71.23 0.61 -0.32 16
4 C -0.20 -2.76 9.48 25.64 0.24 -2.52 16
5 C 0.09 1.28 4.87 71.24 0.35 1.63 16
6 O -0.33 -7.20 10.12 -92.36 -0.93 -8.14 16
7 C 0.11 2.47 6.69 22.51 0.15 2.62 16
8 C -0.21 -3.53 9.04 22.37 0.20 -3.33 16
9 C -0.08 -1.26 10.04 22.26 0.22 -1.04 16
10 C -0.15 -2.71 9.70 22.28 0.22 -2.49 16
11 C -0.05 -0.95 4.37 -19.88 -0.09 -1.04 16
12 C -0.07 -1.35 5.94 29.10 0.17 -1.17 16
13 C 0.46 13.10 7.95 71.24 0.57 13.67 16
14 O -0.53 -17.08 15.78 21.95 0.35 -16.73 16
15 O -0.34 -11.82 9.75 -45.06 -0.44 -12.26 16
16 C 0.07 2.33 5.94 71.23 0.42 2.76 16
17 C 0.45 20.95 7.86 87.66 0.69 21.64 16
18 O -0.61 -34.65 16.08 15.74 0.25 -34.40 16
19 N -0.58 -27.40 5.09 -306.99 -1.56 -28.96 16
20 C -0.33 -19.49 10.16 84.04 0.85 -18.64 16
21 H 0.06 4.25 7.39 -2.91 -0.02 4.22 16
22 C -0.01 -0.31 5.50 84.93 0.47 0.16 16
23 N -0.92 -54.79 13.96 21.66 0.30 -54.49 16
24 Si 0.96 38.25 27.74 68.60 1.90 40.16 16
25 H -0.25 -9.59 7.11 99.48 0.71 -8.88 16
26 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16
27 H -0.23 -7.94 6.52 99.48 0.65 -7.29 16
28 C -0.16 -3.55 9.64 22.37 0.22 -3.33 16
29 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16
30 H 0.08 0.41 8.05 -2.39 -0.02 0.39 16
31 H 0.07 0.53 8.06 -2.39 -0.02 0.51 16
32 H 0.08 0.43 8.02 -2.39 -0.02 0.41 16
33 H 0.08 0.38 7.94 -2.39 -0.02 0.36 16
34 H 0.07 0.54 7.48 -2.39 -0.02 0.52 16
35 H 0.11 1.71 8.04 -2.91 -0.02 1.68 16
36 H 0.07 0.97 7.65 -2.39 -0.02 0.95 16
37 H 0.08 0.94 5.50 -2.39 -0.01 0.93 16
38 H 0.15 1.72 6.30 -2.91 -0.02 1.70 16
39 H 0.15 1.49 8.06 -2.91 -0.02 1.47 16
40 H 0.14 2.03 8.06 -2.91 -0.02 2.01 16
41 H 0.15 2.11 8.08 -2.39 -0.02 2.09 16
42 H 0.14 2.21 8.08 -2.39 -0.02 2.19 16
43 H 0.11 3.34 8.13 -2.39 -0.02 3.32 16
44 H 0.12 3.36 8.13 -2.38 -0.02 3.34 16
45 H 0.39 15.39 5.76 -92.71 -0.53 14.86 16
46 H 0.28 15.22 8.31 -92.71 -0.77 14.45 16
47 H 0.13 2.82 8.06 -2.91 -0.02 2.80 16
Total: -1.00 -81.23 404.28 6.17 -75.06
By element:
Atomic # 1 Polarization: 32.21 SS G_CDS: 0.40 Total: 32.61 kcal
Atomic # 6 Polarization: 1.25 SS G_CDS: 5.91 Total: 7.15 kcal
Atomic # 7 Polarization: -82.19 SS G_CDS: -1.26 Total: -83.45 kcal
Atomic # 8 Polarization: -70.75 SS G_CDS: -0.77 Total: -71.53 kcal
Atomic # 14 Polarization: 38.25 SS G_CDS: 1.90 Total: 40.16 kcal
Total: -81.23 6.17 -75.06 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000842113887.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -65.427 kcal
(2) G-P(sol) polarization free energy of solvation -81.231 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.658 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.174 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.056 kcal
(6) G-S(sol) free energy of system = (1) + (5) -140.483 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.87 seconds