Wall clock time and date at job start Wed Apr 1 2020 05:20:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.36007 * 116.99595 * 2 1 4 4 C 1.37930 * 119.83270 * 359.97438 * 3 2 1 5 5 C 1.39732 * 120.13269 * 180.02562 * 4 3 2 6 6 C 1.47600 * 120.24660 * 180.19919 * 5 4 3 7 7 O 1.21588 * 120.00001 * 24.52596 * 6 5 4 8 8 N 1.34778 * 120.00031 * 204.51880 * 6 5 4 9 9 C 1.47423 * 125.64760 * 5.47292 * 8 6 5 10 10 C 1.55130 * 104.72102 * 155.81353 * 9 8 6 11 11 C 1.55149 * 101.48822 * 37.29329 * 10 9 8 12 12 O 1.42905 * 110.71660 * 82.69427 * 11 10 9 13 13 C 1.50702 * 110.72407 * 205.96748 * 11 10 9 14 14 H 1.07998 * 119.99596 * 354.98225 * 13 11 10 15 15 C 1.37874 * 119.99872 * 174.97452 * 13 11 10 16 16 N 1.31513 * 120.00308 * 0.02562 * 15 13 11 17 17 Si 1.86808 * 119.99634 * 180.02562 * 15 13 11 18 18 H 1.48496 * 109.46997 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.46847 * 120.00372 * 17 15 13 20 20 H 1.48498 * 109.46908 * 240.00386 * 17 15 13 21 21 C 1.47025 * 125.64684 * 185.77487 * 8 6 5 22 22 C 1.39791 * 119.50263 * 0.22300 * 5 4 3 23 23 C 1.37393 * 119.96365 * 359.97438 * 22 5 4 24 24 C 1.39033 * 120.97225 * 359.57561 * 23 22 5 25 25 O 1.36081 * 111.19703 * 180.69913 * 24 23 22 26 26 C 1.43758 * 109.26324 * 340.87884 * 25 24 23 27 27 H 1.08998 * 110.75267 * 269.52451 * 26 25 24 28 28 C 1.52999 * 110.74538 * 146.17254 * 26 25 24 29 29 C 1.51693 * 132.01518 * 179.01107 * 23 22 5 30 30 H 1.08995 * 109.47523 * 60.00894 * 1 2 3 31 31 H 1.09005 * 109.46733 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47457 * 299.99859 * 1 2 3 33 33 H 1.08005 * 119.93073 * 0.05516 * 4 3 2 34 34 H 1.09001 * 110.36575 * 274.74306 * 9 8 6 35 35 H 1.09006 * 110.36299 * 37.06451 * 9 8 6 36 36 H 1.09001 * 111.19019 * 279.18895 * 10 9 8 37 37 H 1.09002 * 110.93736 * 155.29037 * 10 9 8 38 38 H 0.96708 * 113.99466 * 185.02431 * 12 11 10 39 39 H 0.97001 * 119.99739 * 179.97438 * 16 15 13 40 40 H 1.08994 * 109.88318 * 300.44121 * 21 8 6 41 41 H 1.08997 * 109.88334 * 61.46104 * 21 8 6 42 42 H 1.08001 * 120.01536 * 179.97438 * 22 5 4 43 43 H 1.09003 * 109.47165 * 61.46039 * 28 26 25 44 44 H 1.08998 * 109.47138 * 181.45446 * 28 26 25 45 45 H 1.08996 * 109.47804 * 301.45629 * 28 26 25 46 46 H 1.09002 * 110.94250 * 314.03661 * 29 23 22 47 47 H 1.09004 * 110.93735 * 77.68501 * 29 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2119 0.0000 4 6 1.2917 2.3664 -0.0005 5 6 1.9195 3.6148 -0.0011 6 6 1.1143 4.8518 0.0028 7 8 -0.0188 4.8383 0.4434 8 7 1.6353 5.9965 -0.4819 9 6 2.9446 6.1310 -1.1460 10 6 2.8094 7.3979 -2.0310 11 6 1.9449 8.3156 -1.1269 12 8 2.7595 8.9922 -0.1673 13 6 1.1663 9.3026 -1.9580 14 1 1.3222 9.3510 -3.0256 15 6 0.2548 10.1435 -1.3555 16 7 0.0652 10.0848 -0.0555 17 14 -0.7108 11.3664 -2.3860 18 1 -0.3162 11.2330 -3.8113 19 1 -2.1637 11.0921 -2.2473 20 1 -0.4205 12.7456 -1.9185 21 6 0.9947 7.3188 -0.4304 22 6 3.3157 3.6832 -0.0058 23 6 4.0594 2.5280 -0.0093 24 6 3.4443 1.2811 0.0005 25 8 4.3645 0.2786 0.0103 26 6 5.6304 0.7925 -0.4370 27 1 5.7292 0.6889 -1.5176 28 6 6.7845 0.0930 0.2839 29 6 5.5564 2.2842 -0.0341 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 0.2134 2.3053 -0.0001 34 1 3.7334 6.2649 -0.4058 35 1 3.1479 5.2566 -1.7644 36 1 2.2947 7.1729 -2.9652 37 1 3.7848 7.8451 -2.2227 38 1 2.2595 9.5190 0.4713 39 1 -0.5758 10.6767 0.3684 40 1 0.0397 7.2888 -0.9550 41 1 0.8386 7.6149 0.6069 42 1 3.8095 4.6437 -0.0067 43 1 6.7618 -0.9729 0.0572 44 1 7.7317 0.5156 -0.0514 45 1 6.6824 0.2380 1.3593 46 1 6.0413 2.9138 -0.7802 47 1 5.9935 2.4443 0.9515 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000844014024.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:00 Heat of formation + Delta-G solvation = -113.730654 kcal Electronic energy + Delta-G solvation = -31148.818768 eV Core-core repulsion = 26876.914411 eV Total energy + Delta-G solvation = -4271.904357 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.48412 -39.71369 -39.10573 -37.38331 -36.39495 -34.37891 -33.15421 -32.26503 -31.27831 -30.48225 -29.72048 -28.09438 -27.40492 -26.56614 -25.29008 -23.81858 -22.22523 -21.87159 -21.63018 -19.72803 -19.25044 -17.83234 -17.74482 -17.25442 -17.14000 -16.13685 -15.96513 -15.60260 -15.47945 -15.10121 -14.86627 -14.73588 -14.28900 -13.83246 -13.61664 -13.36747 -13.29505 -13.15616 -13.02420 -12.88172 -12.65566 -12.57510 -12.36780 -12.11858 -11.86823 -11.59364 -11.55447 -11.45877 -11.36255 -11.17558 -11.04986 -10.84619 -10.72764 -10.63010 -10.49244 -10.20804 -9.50865 -9.35081 -8.72185 -8.68927 -8.36044 -8.04785 -7.87611 -6.31465 -4.40014 0.84159 1.20936 2.87443 3.03712 3.17364 3.18443 3.27587 3.30778 3.52842 3.80742 4.16228 4.24707 4.26287 4.63648 4.71597 4.78056 4.86079 4.95959 5.01648 5.05385 5.07977 5.14452 5.23612 5.29312 5.35879 5.39590 5.41010 5.56952 5.59466 5.65711 5.73594 5.75359 5.88482 5.92399 6.09897 6.14967 6.28149 6.36051 6.44691 6.69541 6.72227 6.80965 6.92698 7.22264 7.30110 7.33522 7.69979 7.97511 8.13184 8.61037 8.66518 9.25077 9.34405 10.76380 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.016671 B = 0.002787 C = 0.002487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1679.202852 B =10045.201160 C =11254.417896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.313 6.313 3 C 0.101 3.899 4 C -0.121 4.121 5 C -0.108 4.108 6 C 0.565 3.435 7 O -0.547 6.547 8 N -0.603 5.603 9 C 0.096 3.904 10 C -0.119 4.119 11 C 0.248 3.752 12 O -0.585 6.585 13 C -0.537 4.537 14 H 0.067 0.933 15 C 0.070 3.930 16 N -0.894 5.894 17 Si 0.903 3.097 18 H -0.271 1.271 19 H -0.282 1.282 20 H -0.281 1.281 21 C 0.104 3.896 22 C -0.081 4.081 23 C -0.147 4.147 24 C 0.096 3.904 25 O -0.292 6.292 26 C 0.074 3.926 27 H 0.088 0.912 28 C -0.149 4.149 29 C -0.104 4.104 30 H 0.057 0.943 31 H 0.100 0.900 32 H 0.058 0.942 33 H 0.148 0.852 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.382 0.618 39 H 0.270 0.730 40 H 0.069 0.931 41 H 0.067 0.933 42 H 0.147 0.853 43 H 0.068 0.932 44 H 0.079 0.921 45 H 0.067 0.933 46 H 0.097 0.903 47 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.174 -17.882 -0.598 20.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.227 6.227 3 C 0.056 3.944 4 C -0.141 4.141 5 C -0.112 4.112 6 C 0.354 3.646 7 O -0.427 6.427 8 N -0.335 5.335 9 C -0.026 4.026 10 C -0.157 4.157 11 C 0.207 3.793 12 O -0.393 6.393 13 C -0.575 4.575 14 H 0.085 0.915 15 C -0.133 4.133 16 N -0.532 5.532 17 Si 0.731 3.269 18 H -0.196 1.196 19 H -0.208 1.208 20 H -0.207 1.207 21 C -0.017 4.017 22 C -0.099 4.099 23 C -0.148 4.148 24 C 0.049 3.951 25 O -0.207 6.207 26 C 0.019 3.981 27 H 0.106 0.894 28 C -0.206 4.206 29 C -0.141 4.141 30 H 0.076 0.924 31 H 0.118 0.882 32 H 0.077 0.923 33 H 0.166 0.834 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.097 0.903 37 H 0.096 0.904 38 H 0.233 0.767 39 H 0.080 0.920 40 H 0.087 0.913 41 H 0.085 0.915 42 H 0.164 0.836 43 H 0.087 0.913 44 H 0.098 0.902 45 H 0.086 0.914 46 H 0.115 0.885 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 9.979 -18.572 -0.469 21.088 hybrid contribution -1.309 1.209 -0.115 1.785 sum 8.670 -17.363 -0.584 19.416 Atomic orbital electron populations 1.23107 0.78219 1.03940 1.01837 1.86146 1.21377 1.25768 1.89365 1.17960 0.87957 0.85207 1.03258 1.21008 1.00671 0.89828 1.02556 1.19670 0.93118 0.93393 1.04988 1.17687 0.85935 0.82217 0.78799 1.90757 1.18412 1.85251 1.48238 1.48684 1.19848 1.08709 1.56285 1.22663 0.85528 0.99002 0.95434 1.22830 1.01239 0.93793 0.97791 1.19507 0.85975 0.88244 0.85525 1.86107 1.38912 1.67359 1.46964 1.21524 1.22094 1.19200 0.94700 0.91459 1.25076 0.96079 0.96924 0.95218 1.69703 1.35758 1.38745 1.09027 0.86352 0.79558 0.80623 0.80405 1.19586 1.20778 1.20730 1.23061 0.97834 0.78913 1.01924 1.20959 0.92301 0.98457 0.98213 1.20479 0.95450 0.92343 1.06538 1.18842 0.87812 0.87566 1.00836 1.86885 1.18544 1.33304 1.81957 1.23411 0.83186 0.92291 0.99255 0.89449 1.21877 0.96015 1.01413 1.01280 1.21912 0.92046 0.96164 1.03967 0.92427 0.88160 0.92324 0.83431 0.91335 0.91405 0.90329 0.90401 0.76733 0.92036 0.91270 0.91462 0.83552 0.91280 0.90198 0.91385 0.88505 0.88675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.80 101.05 0.99 1.22 16 2 O -0.31 -4.24 10.50 -19.78 -0.21 -4.45 16 3 C 0.10 1.47 6.70 -39.05 -0.26 1.21 16 4 C -0.12 -1.84 8.56 -39.14 -0.33 -2.18 16 5 C -0.11 -1.79 5.67 -104.94 -0.60 -2.38 16 6 C 0.57 11.45 7.64 -12.44 -0.10 11.36 16 7 O -0.55 -12.86 16.94 5.29 0.09 -12.77 16 8 N -0.60 -12.25 3.32 -171.58 -0.57 -12.82 16 9 C 0.10 1.63 4.99 -2.41 -0.01 1.62 16 10 C -0.12 -2.26 6.24 -24.47 -0.15 -2.42 16 11 C 0.25 5.80 0.85 -89.94 -0.08 5.73 16 12 O -0.58 -14.15 13.08 -35.23 -0.46 -14.61 16 13 C -0.54 -13.74 8.12 -34.44 -0.28 -14.02 16 14 H 0.07 1.70 7.78 -52.49 -0.41 1.29 16 15 C 0.07 1.81 5.28 -17.82 -0.09 1.71 16 16 N -0.89 -23.45 10.98 55.43 0.61 -22.84 16 17 Si 0.90 20.23 29.54 -169.99 -5.02 15.21 16 18 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 19 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 20 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 21 C 0.10 2.47 5.24 -3.06 -0.02 2.45 16 22 C -0.08 -1.14 8.06 -39.31 -0.32 -1.45 16 23 C -0.15 -1.86 6.25 -104.15 -0.65 -2.51 16 24 C 0.10 1.34 6.98 -38.64 -0.27 1.07 16 25 O -0.29 -3.80 10.80 -20.02 -0.22 -4.02 16 26 C 0.07 0.66 4.26 -25.84 -0.11 0.55 16 27 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 28 C -0.15 -0.95 9.60 37.16 0.36 -0.59 16 29 C -0.10 -0.93 6.65 -26.50 -0.18 -1.10 16 30 H 0.06 0.53 7.65 -51.93 -0.40 0.13 16 31 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.06 0.55 7.65 -51.93 -0.40 0.16 16 33 H 0.15 2.16 6.03 -52.48 -0.32 1.84 16 34 H 0.07 1.08 6.84 -51.93 -0.36 0.73 16 35 H 0.07 0.97 6.81 -51.93 -0.35 0.62 16 36 H 0.08 1.46 8.04 -51.93 -0.42 1.04 16 37 H 0.08 1.39 8.14 -51.93 -0.42 0.96 16 38 H 0.38 9.53 7.47 45.56 0.34 9.87 16 39 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 40 H 0.07 1.81 7.81 -51.93 -0.41 1.40 16 41 H 0.07 1.74 7.93 -51.93 -0.41 1.33 16 42 H 0.15 1.94 4.59 -52.49 -0.24 1.69 16 43 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.07 0.46 8.11 -51.93 -0.42 0.04 16 46 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 47 H 0.09 0.75 7.90 -51.93 -0.41 0.34 16 LS Contribution 379.14 15.07 5.71 5.71 Total: -1.00 -31.12 379.14 -8.02 -39.15 By element: Atomic # 1 Polarization: 17.05 SS G_CDS: -5.87 Total: 11.18 kcal Atomic # 6 Polarization: 2.36 SS G_CDS: -2.09 Total: 0.27 kcal Atomic # 7 Polarization: -35.70 SS G_CDS: 0.04 Total: -35.66 kcal Atomic # 8 Polarization: -35.05 SS G_CDS: -0.80 Total: -35.85 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -31.12 -8.02 -39.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844014024.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.585 kcal (2) G-P(sol) polarization free energy of solvation -31.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds