Wall clock time and date at job start Wed Apr 1 2020 05:19:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.36007 * 116.99595 * 2 1 4 4 C 1.37930 * 119.83270 * 359.97438 * 3 2 1 5 5 C 1.39732 * 120.13269 * 180.02562 * 4 3 2 6 6 C 1.47600 * 120.24660 * 180.19919 * 5 4 3 7 7 O 1.21588 * 120.00001 * 24.52596 * 6 5 4 8 8 N 1.34778 * 120.00031 * 204.51880 * 6 5 4 9 9 C 1.47423 * 125.64760 * 5.47292 * 8 6 5 10 10 C 1.55130 * 104.72102 * 155.81353 * 9 8 6 11 11 C 1.55149 * 101.48822 * 37.29329 * 10 9 8 12 12 O 1.42905 * 110.71660 * 82.69427 * 11 10 9 13 13 C 1.50702 * 110.72407 * 205.96748 * 11 10 9 14 14 H 1.07998 * 119.99596 * 354.98225 * 13 11 10 15 15 C 1.37874 * 119.99872 * 174.97452 * 13 11 10 16 16 N 1.31513 * 120.00308 * 0.02562 * 15 13 11 17 17 Si 1.86808 * 119.99634 * 180.02562 * 15 13 11 18 18 H 1.48496 * 109.46997 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.46847 * 120.00372 * 17 15 13 20 20 H 1.48498 * 109.46908 * 240.00386 * 17 15 13 21 21 C 1.47025 * 125.64684 * 185.77487 * 8 6 5 22 22 C 1.39791 * 119.50263 * 0.22300 * 5 4 3 23 23 C 1.37393 * 119.96365 * 359.97438 * 22 5 4 24 24 C 1.39033 * 120.97225 * 359.57561 * 23 22 5 25 25 O 1.36081 * 111.19703 * 180.69913 * 24 23 22 26 26 C 1.43758 * 109.26324 * 340.87884 * 25 24 23 27 27 H 1.08998 * 110.75267 * 269.52451 * 26 25 24 28 28 C 1.52999 * 110.74538 * 146.17254 * 26 25 24 29 29 C 1.51693 * 132.01518 * 179.01107 * 23 22 5 30 30 H 1.08995 * 109.47523 * 60.00894 * 1 2 3 31 31 H 1.09005 * 109.46733 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47457 * 299.99859 * 1 2 3 33 33 H 1.08005 * 119.93073 * 0.05516 * 4 3 2 34 34 H 1.09001 * 110.36575 * 274.74306 * 9 8 6 35 35 H 1.09006 * 110.36299 * 37.06451 * 9 8 6 36 36 H 1.09001 * 111.19019 * 279.18895 * 10 9 8 37 37 H 1.09002 * 110.93736 * 155.29037 * 10 9 8 38 38 H 0.96708 * 113.99466 * 185.02431 * 12 11 10 39 39 H 0.97001 * 119.99739 * 179.97438 * 16 15 13 40 40 H 1.08994 * 109.88318 * 300.44121 * 21 8 6 41 41 H 1.08997 * 109.88334 * 61.46104 * 21 8 6 42 42 H 1.08001 * 120.01536 * 179.97438 * 22 5 4 43 43 H 1.09003 * 109.47165 * 61.46039 * 28 26 25 44 44 H 1.08998 * 109.47138 * 181.45446 * 28 26 25 45 45 H 1.08996 * 109.47804 * 301.45629 * 28 26 25 46 46 H 1.09002 * 110.94250 * 314.03661 * 29 23 22 47 47 H 1.09004 * 110.93735 * 77.68501 * 29 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2119 0.0000 4 6 1.2917 2.3664 -0.0005 5 6 1.9195 3.6148 -0.0011 6 6 1.1143 4.8518 0.0028 7 8 -0.0188 4.8383 0.4434 8 7 1.6353 5.9965 -0.4819 9 6 2.9446 6.1310 -1.1460 10 6 2.8094 7.3979 -2.0310 11 6 1.9449 8.3156 -1.1269 12 8 2.7595 8.9922 -0.1673 13 6 1.1663 9.3026 -1.9580 14 1 1.3222 9.3510 -3.0256 15 6 0.2548 10.1435 -1.3555 16 7 0.0652 10.0848 -0.0555 17 14 -0.7108 11.3664 -2.3860 18 1 -0.3162 11.2330 -3.8113 19 1 -2.1637 11.0921 -2.2473 20 1 -0.4205 12.7456 -1.9185 21 6 0.9947 7.3188 -0.4304 22 6 3.3157 3.6832 -0.0058 23 6 4.0594 2.5280 -0.0093 24 6 3.4443 1.2811 0.0005 25 8 4.3645 0.2786 0.0103 26 6 5.6304 0.7925 -0.4370 27 1 5.7292 0.6889 -1.5176 28 6 6.7845 0.0930 0.2839 29 6 5.5564 2.2842 -0.0341 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 0.2134 2.3053 -0.0001 34 1 3.7334 6.2649 -0.4058 35 1 3.1479 5.2566 -1.7644 36 1 2.2947 7.1729 -2.9652 37 1 3.7848 7.8451 -2.2227 38 1 2.2595 9.5190 0.4713 39 1 -0.5758 10.6767 0.3684 40 1 0.0397 7.2888 -0.9550 41 1 0.8386 7.6149 0.6069 42 1 3.8095 4.6437 -0.0067 43 1 6.7618 -0.9729 0.0572 44 1 7.7317 0.5156 -0.0514 45 1 6.6824 0.2380 1.3593 46 1 6.0413 2.9138 -0.7802 47 1 5.9935 2.4443 0.9515 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000844014024.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:19:59 Heat of formation + Delta-G solvation = -135.582692 kcal Electronic energy + Delta-G solvation = -31149.766343 eV Core-core repulsion = 26876.914411 eV Total energy + Delta-G solvation = -4272.851932 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.47905 -41.17513 -40.15756 -39.03455 -37.60091 -36.13416 -34.23723 -33.91480 -32.37733 -31.81570 -31.02369 -29.56237 -28.52658 -27.48889 -26.91859 -25.25970 -23.52915 -22.68621 -22.64500 -21.44357 -20.66133 -19.18193 -18.91083 -18.77572 -18.20959 -17.43455 -17.25683 -17.00520 -16.62765 -16.55434 -16.35177 -16.00001 -15.84123 -14.88115 -14.85327 -14.80988 -14.65314 -14.33746 -14.23067 -13.95538 -13.81856 -13.60914 -13.47836 -13.37326 -13.20582 -12.99991 -12.87584 -12.68611 -12.52325 -12.37119 -12.28309 -12.22697 -12.18887 -12.07728 -11.89011 -11.71306 -11.15982 -11.12522 -10.66012 -10.28649 -9.78166 -9.60449 -9.02467 -8.27273 -6.42638 -0.33637 0.14433 1.39315 1.43077 1.53318 1.61570 1.90865 2.11913 2.25158 2.37529 2.55319 2.99750 3.25716 3.40897 3.58542 3.73729 3.84926 3.97759 4.01933 4.06840 4.14278 4.15585 4.21269 4.28345 4.30731 4.37365 4.46131 4.54643 4.65675 4.67425 4.73041 4.78754 4.84036 4.90421 5.00660 5.05218 5.07820 5.11165 5.12915 5.24336 5.28084 5.35199 5.37690 5.51285 5.73648 5.81366 6.05374 6.31043 6.53798 6.65819 7.03591 7.26903 7.34523 8.78865 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.016671 B = 0.002787 C = 0.002487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1679.202852 B =10045.201160 C =11254.417896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.325 6.325 3 C 0.093 3.907 4 C -0.126 4.126 5 C -0.129 4.129 6 C 0.562 3.438 7 O -0.593 6.593 8 N -0.607 5.607 9 C 0.101 3.899 10 C -0.113 4.113 11 C 0.235 3.765 12 O -0.584 6.584 13 C -0.555 4.555 14 H 0.067 0.933 15 C 0.025 3.975 16 N -0.915 5.915 17 Si 0.961 3.039 18 H -0.264 1.264 19 H -0.286 1.286 20 H -0.277 1.277 21 C 0.121 3.879 22 C -0.074 4.074 23 C -0.141 4.141 24 C 0.092 3.908 25 O -0.310 6.310 26 C 0.066 3.934 27 H 0.102 0.898 28 C -0.145 4.145 29 C -0.099 4.099 30 H 0.060 0.940 31 H 0.129 0.871 32 H 0.057 0.943 33 H 0.144 0.856 34 H 0.088 0.912 35 H 0.103 0.897 36 H 0.082 0.918 37 H 0.096 0.904 38 H 0.375 0.625 39 H 0.269 0.731 40 H 0.033 0.967 41 H 0.034 0.966 42 H 0.159 0.841 43 H 0.068 0.932 44 H 0.107 0.893 45 H 0.062 0.938 46 H 0.125 0.875 47 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.038 -19.161 -1.777 23.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.240 6.240 3 C 0.048 3.952 4 C -0.145 4.145 5 C -0.132 4.132 6 C 0.353 3.647 7 O -0.476 6.476 8 N -0.338 5.338 9 C -0.020 4.020 10 C -0.151 4.151 11 C 0.194 3.806 12 O -0.392 6.392 13 C -0.593 4.593 14 H 0.086 0.914 15 C -0.176 4.176 16 N -0.554 5.554 17 Si 0.787 3.213 18 H -0.188 1.188 19 H -0.212 1.212 20 H -0.203 1.203 21 C -0.002 4.002 22 C -0.092 4.092 23 C -0.142 4.142 24 C 0.046 3.954 25 O -0.224 6.224 26 C 0.012 3.988 27 H 0.120 0.880 28 C -0.202 4.202 29 C -0.136 4.136 30 H 0.079 0.921 31 H 0.147 0.853 32 H 0.075 0.925 33 H 0.161 0.839 34 H 0.105 0.895 35 H 0.121 0.879 36 H 0.101 0.899 37 H 0.115 0.885 38 H 0.224 0.776 39 H 0.079 0.921 40 H 0.052 0.948 41 H 0.053 0.947 42 H 0.176 0.824 43 H 0.087 0.913 44 H 0.125 0.875 45 H 0.082 0.918 46 H 0.143 0.857 47 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 12.890 -19.871 -1.670 23.744 hybrid contribution -2.172 1.482 0.270 2.643 sum 10.718 -18.388 -1.400 21.330 Atomic orbital electron populations 1.23360 0.76537 1.05863 1.01949 1.86131 1.23177 1.25378 1.89275 1.18058 0.88614 0.85189 1.03384 1.20948 1.00682 0.89890 1.03020 1.19354 0.93965 0.91633 1.08241 1.18318 0.85692 0.83132 0.77556 1.90716 1.20660 1.86067 1.50167 1.48703 1.20962 1.07480 1.56655 1.22874 0.84050 0.99355 0.95732 1.22831 1.01269 0.93627 0.97340 1.19687 0.86873 0.88256 0.85749 1.86095 1.38836 1.67310 1.46949 1.21862 1.22625 1.19838 0.95021 0.91449 1.25803 0.96998 0.98575 0.96179 1.69808 1.36152 1.39304 1.10183 0.85448 0.77868 0.78654 0.79323 1.18842 1.21189 1.20273 1.22580 0.96968 0.81310 0.99337 1.20976 0.91072 0.99554 0.97634 1.20829 0.97603 0.91071 1.04661 1.19129 0.87916 0.88579 0.99811 1.86886 1.19869 1.33764 1.81912 1.23804 0.82056 0.92519 1.00464 0.88039 1.21917 0.96111 1.01386 1.00791 1.22086 0.89286 0.96452 1.05755 0.92118 0.85337 0.92454 0.83879 0.89455 0.87943 0.89949 0.88506 0.77569 0.92141 0.94848 0.94704 0.82387 0.91330 0.87492 0.91842 0.85659 0.87277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 9.80 113.37 1.11 1.44 16 2 O -0.33 -8.64 10.50 -93.61 -0.98 -9.62 16 3 C 0.09 2.65 6.70 22.62 0.15 2.80 16 4 C -0.13 -3.86 8.56 22.56 0.19 -3.67 16 5 C -0.13 -4.21 5.67 -20.07 -0.11 -4.33 16 6 C 0.56 23.38 7.64 86.71 0.66 24.04 16 7 O -0.59 -29.44 16.94 -3.99 -0.07 -29.51 16 8 N -0.61 -24.89 3.32 -815.01 -2.71 -27.60 16 9 C 0.10 3.19 4.99 86.93 0.43 3.63 16 10 C -0.11 -4.12 6.24 32.06 0.20 -3.92 16 11 C 0.23 11.08 0.85 -10.35 -0.01 11.07 16 12 O -0.58 -28.43 13.08 -148.98 -1.95 -30.38 16 13 C -0.56 -28.71 8.12 25.60 0.21 -28.50 16 14 H 0.07 3.40 7.78 -2.91 -0.02 3.38 16 15 C 0.03 1.32 5.28 84.65 0.45 1.77 16 16 N -0.92 -49.55 10.98 21.45 0.24 -49.32 16 17 Si 0.96 41.91 29.54 68.60 2.03 43.94 16 18 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 19 H -0.29 -12.55 7.11 99.48 0.71 -11.84 16 20 H -0.28 -11.81 7.11 99.48 0.71 -11.11 16 21 C 0.12 5.99 5.24 86.73 0.45 6.44 16 22 C -0.07 -1.92 8.06 22.45 0.18 -1.74 16 23 C -0.14 -3.15 6.25 -19.56 -0.12 -3.27 16 24 C 0.09 2.41 6.98 22.88 0.16 2.57 16 25 O -0.31 -7.33 10.80 -94.46 -1.02 -8.35 16 26 C 0.07 0.94 4.26 31.17 0.13 1.07 16 27 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 28 C -0.15 -1.33 9.60 71.98 0.69 -0.64 16 29 C -0.10 -1.34 6.65 30.74 0.20 -1.13 16 30 H 0.06 1.11 7.65 -2.39 -0.02 1.09 16 31 H 0.13 1.65 8.14 -2.38 -0.02 1.63 16 32 H 0.06 1.10 7.65 -2.39 -0.02 1.08 16 33 H 0.14 4.38 6.03 -2.91 -0.02 4.36 16 34 H 0.09 2.48 6.84 -2.39 -0.02 2.46 16 35 H 0.10 2.58 6.81 -2.38 -0.02 2.56 16 36 H 0.08 2.93 8.04 -2.39 -0.02 2.91 16 37 H 0.10 3.17 8.14 -2.39 -0.02 3.15 16 38 H 0.38 19.24 7.47 -74.05 -0.55 18.69 16 39 H 0.27 13.98 8.31 -92.71 -0.77 13.21 16 40 H 0.03 1.84 7.81 -2.39 -0.02 1.83 16 41 H 0.03 1.91 7.93 -2.39 -0.02 1.89 16 42 H 0.16 3.66 4.59 -2.91 -0.01 3.65 16 43 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 44 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16 45 H 0.06 0.65 8.11 -2.39 -0.02 0.63 16 46 H 0.13 1.04 8.14 -2.39 -0.02 1.03 16 47 H 0.11 1.24 7.90 -2.38 -0.02 1.22 16 Total: -1.00 -70.62 379.14 0.98 -69.64 By element: Atomic # 1 Polarization: 33.12 SS G_CDS: 0.46 Total: 33.58 kcal Atomic # 6 Polarization: 2.64 SS G_CDS: 4.98 Total: 7.63 kcal Atomic # 7 Polarization: -74.44 SS G_CDS: -2.47 Total: -76.91 kcal Atomic # 8 Polarization: -73.85 SS G_CDS: -4.02 Total: -77.87 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 2.03 Total: 43.94 kcal Total: -70.62 0.98 -69.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844014024.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.948 kcal (2) G-P(sol) polarization free energy of solvation -70.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds