Wall clock time and date at job start Wed Apr 1 2020 05:20:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.36006 * 116.99576 * 2 1 4 4 C 1.37928 * 119.83461 * 0.02562 * 3 2 1 5 5 C 1.39734 * 120.13947 * 180.09571 * 4 3 2 6 6 C 1.47599 * 120.25198 * 179.85219 * 5 4 3 7 7 O 1.21586 * 120.00235 * 320.12693 * 6 5 4 8 8 N 1.34775 * 119.99897 * 140.12712 * 6 5 4 9 9 C 1.47023 * 125.65084 * 354.54527 * 8 6 5 10 10 C 1.54326 * 107.27095 * 181.07670 * 9 8 6 11 11 C 1.55440 * 102.96822 * 22.19724 * 10 9 8 12 12 O 1.42904 * 111.01844 * 82.52024 * 11 10 9 13 13 C 1.50699 * 111.11839 * 206.45981 * 11 10 9 14 14 H 1.08001 * 120.00054 * 353.55765 * 13 11 10 15 15 C 1.37881 * 120.00459 * 173.55351 * 13 11 10 16 16 N 1.31520 * 119.99512 * 0.02562 * 15 13 11 17 17 Si 1.86791 * 120.00073 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47276 * 60.00270 * 17 15 13 19 19 H 1.48507 * 109.47156 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47517 * 300.00336 * 17 15 13 21 21 C 1.47430 * 125.64999 * 174.57121 * 8 6 5 22 22 C 1.39793 * 119.49524 * 0.12190 * 5 4 3 23 23 C 1.37389 * 119.96543 * 359.37792 * 22 5 4 24 24 C 1.39042 * 120.97399 * 0.89428 * 23 22 5 25 25 O 1.36082 * 111.20198 * 179.00064 * 24 23 22 26 26 C 1.43743 * 109.29072 * 18.89906 * 25 24 23 27 27 H 1.09001 * 110.74157 * 90.58305 * 26 25 24 28 28 C 1.53000 * 110.74794 * 213.74092 * 26 25 24 29 29 C 1.51690 * 132.01896 * 180.76220 * 23 22 5 30 30 H 1.08999 * 109.47634 * 59.99934 * 1 2 3 31 31 H 1.08996 * 109.46875 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46682 * 299.99692 * 1 2 3 33 33 H 1.08002 * 119.93209 * 0.06929 * 4 3 2 34 34 H 1.08999 * 109.88305 * 300.50082 * 9 8 6 35 35 H 1.08994 * 109.88016 * 61.66492 * 9 8 6 36 36 H 1.09001 * 110.71645 * 140.55830 * 10 9 8 37 37 H 1.08991 * 110.72385 * 263.65247 * 10 9 8 38 38 H 0.96694 * 114.00110 * 186.50124 * 12 11 10 39 39 H 0.96996 * 119.99146 * 180.02562 * 16 15 13 40 40 H 1.09004 * 110.36657 * 274.69579 * 21 8 6 41 41 H 1.09001 * 110.36452 * 36.90041 * 21 8 6 42 42 H 1.08004 * 120.01446 * 179.66556 * 22 5 4 43 43 H 1.09001 * 109.47316 * 58.55113 * 28 26 25 44 44 H 1.08999 * 109.46957 * 178.55206 * 28 26 25 45 45 H 1.09002 * 109.47221 * 298.54629 * 28 26 25 46 46 H 1.08998 * 110.93980 * 46.43299 * 29 23 22 47 47 H 1.08999 * 110.97383 * 282.75554 * 29 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2119 0.0000 4 6 1.2918 2.3664 0.0005 5 6 1.9194 3.6148 -0.0015 6 6 1.1143 4.8519 -0.0042 7 8 0.1057 4.9194 -0.6799 8 7 1.4971 5.9067 0.7423 9 6 2.6236 5.9242 1.6870 10 6 2.6631 7.3280 2.3270 11 6 1.2106 7.8438 2.1262 12 8 0.3435 7.3436 3.1461 13 6 1.1710 9.3495 2.0773 14 1 2.0651 9.9201 2.2809 15 6 -0.0066 9.9988 1.7726 16 7 -1.0955 9.3040 1.5252 17 14 -0.0553 11.8650 1.7113 18 1 0.8990 12.3517 0.6829 19 1 -1.4278 12.3133 1.3637 20 1 0.3242 12.4141 3.0379 21 6 0.8554 7.2340 0.7473 22 6 3.3157 3.6832 -0.0066 23 6 4.0594 2.5281 0.0033 24 6 3.4444 1.2810 -0.0002 25 8 4.3645 0.2785 -0.0110 26 6 5.6338 0.7942 0.4241 27 1 5.7411 0.6947 1.5043 28 6 6.7824 0.0889 -0.2998 29 6 5.5565 2.2844 0.0161 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8901 33 1 0.2135 2.3054 0.0021 34 1 2.4723 5.1691 2.4583 35 1 3.5558 5.7328 1.1557 36 1 2.9053 7.2615 3.3876 37 1 3.3773 7.9680 1.8091 38 1 -0.5897 7.5562 3.0081 39 1 -1.9238 9.7607 1.3105 40 1 1.2566 7.8524 -0.0557 41 1 -0.2250 7.1333 0.6439 42 1 3.8095 4.6437 -0.0137 43 1 6.6731 0.2268 -1.3755 44 1 7.7321 0.5128 0.0262 45 1 6.7603 -0.9755 -0.0658 46 1 6.0478 2.9168 0.7555 47 1 5.9856 2.4401 -0.9737 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000844014025.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:02 Heat of formation + Delta-G solvation = -116.411191 kcal Electronic energy + Delta-G solvation = -31153.725698 eV Core-core repulsion = 26881.705104 eV Total energy + Delta-G solvation = -4272.020594 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.46734 -39.66008 -39.08324 -37.34835 -36.36314 -34.29108 -33.15468 -32.25327 -31.29793 -30.47423 -29.70710 -28.00846 -27.48455 -26.56826 -25.28917 -23.72903 -22.17851 -21.88939 -21.60843 -19.72306 -19.22237 -17.86487 -17.68654 -17.29861 -17.01495 -16.17940 -16.11383 -15.58479 -15.30529 -15.20960 -14.79137 -14.65841 -14.37185 -13.85233 -13.64548 -13.46389 -13.28595 -13.11562 -13.06015 -12.84162 -12.70409 -12.59631 -12.25318 -12.01741 -11.79904 -11.60749 -11.55067 -11.45162 -11.36772 -11.19585 -11.03220 -10.85249 -10.71672 -10.60170 -10.51272 -10.21401 -9.49767 -9.37810 -8.71822 -8.68556 -8.40814 -7.99567 -7.78787 -6.29668 -4.39694 0.89500 1.20987 2.88720 3.02420 3.18950 3.20414 3.26750 3.28046 3.51385 3.77241 4.16481 4.24318 4.26017 4.63224 4.74063 4.76862 4.86421 4.96755 5.01613 5.04656 5.09619 5.14440 5.23392 5.28820 5.38597 5.40451 5.41373 5.56045 5.59260 5.63936 5.74394 5.76337 5.90594 6.00904 6.09298 6.18570 6.30255 6.36051 6.47382 6.68643 6.72376 6.82136 6.95921 7.21990 7.30953 7.32860 7.71819 7.99454 8.15877 8.62119 8.66757 9.27600 9.35968 10.77353 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.017185 B = 0.002758 C = 0.002491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.969724 B =10149.614253 C =11235.734531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.312 6.312 3 C 0.105 3.895 4 C -0.125 4.125 5 C -0.102 4.102 6 C 0.567 3.433 7 O -0.544 6.544 8 N -0.602 5.602 9 C 0.101 3.899 10 C -0.119 4.119 11 C 0.250 3.750 12 O -0.582 6.582 13 C -0.539 4.539 14 H 0.066 0.934 15 C 0.071 3.929 16 N -0.892 5.892 17 Si 0.904 3.096 18 H -0.275 1.275 19 H -0.285 1.285 20 H -0.275 1.275 21 C 0.093 3.907 22 C -0.075 4.075 23 C -0.145 4.145 24 C 0.092 3.908 25 O -0.292 6.292 26 C 0.074 3.926 27 H 0.088 0.912 28 C -0.149 4.149 29 C -0.103 4.103 30 H 0.058 0.942 31 H 0.100 0.900 32 H 0.057 0.943 33 H 0.146 0.854 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.074 0.926 37 H 0.078 0.922 38 H 0.381 0.619 39 H 0.271 0.729 40 H 0.062 0.938 41 H 0.088 0.912 42 H 0.139 0.861 43 H 0.067 0.933 44 H 0.079 0.921 45 H 0.068 0.932 46 H 0.096 0.904 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.157 -16.363 -2.129 20.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.226 6.226 3 C 0.060 3.940 4 C -0.144 4.144 5 C -0.105 4.105 6 C 0.355 3.645 7 O -0.424 6.424 8 N -0.333 5.333 9 C -0.022 4.022 10 C -0.157 4.157 11 C 0.209 3.791 12 O -0.391 6.391 13 C -0.577 4.577 14 H 0.084 0.916 15 C -0.132 4.132 16 N -0.531 5.531 17 Si 0.731 3.269 18 H -0.200 1.200 19 H -0.211 1.211 20 H -0.200 1.200 21 C -0.028 4.028 22 C -0.094 4.094 23 C -0.146 4.146 24 C 0.046 3.954 25 O -0.207 6.207 26 C 0.019 3.981 27 H 0.105 0.895 28 C -0.206 4.206 29 C -0.140 4.140 30 H 0.077 0.923 31 H 0.119 0.881 32 H 0.076 0.924 33 H 0.164 0.836 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.093 0.907 37 H 0.097 0.903 38 H 0.231 0.769 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.107 0.893 42 H 0.157 0.843 43 H 0.086 0.914 44 H 0.098 0.902 45 H 0.087 0.913 46 H 0.114 0.886 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 12.036 -17.010 -2.392 20.975 hybrid contribution -0.835 1.485 -0.302 1.730 sum 11.201 -15.525 -2.693 19.332 Atomic orbital electron populations 1.23115 0.78186 1.03977 1.01854 1.86146 1.21407 1.25764 1.89308 1.17952 0.87957 0.85182 1.02932 1.20970 1.00540 0.89847 1.03082 1.19675 0.93182 0.93479 1.04203 1.17675 0.84478 0.82185 0.80187 1.90772 1.25567 1.82608 1.43409 1.48662 1.31860 1.12843 1.39963 1.22214 0.88598 0.99625 0.91799 1.22684 0.98978 0.93471 1.00522 1.19658 0.85241 0.91404 0.82791 1.86106 1.22284 1.80437 1.50255 1.21408 0.96541 0.90590 1.49151 0.91561 1.25084 0.95421 0.99307 0.93420 1.69711 1.00700 1.36193 1.46453 0.86458 0.77283 0.84437 0.78694 1.20031 1.21093 1.19994 1.23322 0.99492 0.79020 1.00931 1.20535 0.91987 0.97796 0.99083 1.20447 0.95410 0.92358 1.06376 1.18799 0.87801 0.87517 1.01236 1.86879 1.18287 1.33155 1.82371 1.23398 0.83139 0.92223 0.99381 0.89464 1.21876 0.96066 1.01403 1.01230 1.21899 0.92031 0.96234 1.03865 0.92316 0.88130 0.92392 0.83632 0.92017 0.92291 0.90700 0.90336 0.76901 0.91919 0.91942 0.89324 0.84338 0.91417 0.90228 0.91254 0.88550 0.88739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.81 101.05 0.99 1.23 16 2 O -0.31 -4.30 10.50 -19.78 -0.21 -4.51 16 3 C 0.11 1.55 6.70 -39.05 -0.26 1.28 16 4 C -0.12 -1.93 8.61 -39.14 -0.34 -2.26 16 5 C -0.10 -1.70 5.48 -104.94 -0.57 -2.27 16 6 C 0.57 11.57 7.45 -12.44 -0.09 11.48 16 7 O -0.54 -12.96 17.16 5.29 0.09 -12.86 16 8 N -0.60 -12.28 3.33 -171.72 -0.57 -12.85 16 9 C 0.10 1.73 5.81 -3.06 -0.02 1.71 16 10 C -0.12 -2.27 6.14 -24.74 -0.15 -2.42 16 11 C 0.25 5.90 0.88 -89.47 -0.08 5.82 16 12 O -0.58 -14.61 13.16 -35.23 -0.46 -15.07 16 13 C -0.54 -13.71 8.28 -34.44 -0.29 -14.00 16 14 H 0.07 1.65 7.79 -52.49 -0.41 1.24 16 15 C 0.07 1.83 5.29 -17.82 -0.09 1.73 16 16 N -0.89 -23.53 10.69 55.43 0.59 -22.94 16 17 Si 0.90 20.08 29.54 -169.99 -5.02 15.06 16 18 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 19 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 20 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 21 C 0.09 2.21 5.41 -2.53 -0.01 2.19 16 22 C -0.08 -1.05 8.45 -39.31 -0.33 -1.39 16 23 C -0.14 -1.82 6.25 -104.15 -0.65 -2.47 16 24 C 0.09 1.30 6.98 -38.64 -0.27 1.03 16 25 O -0.29 -3.82 10.80 -20.02 -0.22 -4.03 16 26 C 0.07 0.66 4.25 -25.84 -0.11 0.55 16 27 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 28 C -0.15 -0.94 9.61 37.16 0.36 -0.58 16 29 C -0.10 -0.91 6.65 -26.50 -0.18 -1.08 16 30 H 0.06 0.57 7.65 -51.93 -0.40 0.17 16 31 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.06 0.55 7.65 -51.93 -0.40 0.15 16 33 H 0.15 2.16 6.24 -52.49 -0.33 1.83 16 34 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 35 H 0.06 0.83 5.48 -51.93 -0.28 0.54 16 36 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 37 H 0.08 1.39 8.04 -51.93 -0.42 0.97 16 38 H 0.38 9.84 7.57 45.56 0.34 10.18 16 39 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 40 H 0.06 1.51 8.03 -51.93 -0.42 1.10 16 41 H 0.09 2.37 7.27 -51.93 -0.38 1.99 16 42 H 0.14 1.76 5.67 -52.48 -0.30 1.46 16 43 H 0.07 0.45 8.12 -51.93 -0.42 0.03 16 44 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 45 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.09 0.73 7.91 -51.93 -0.41 0.32 16 LS Contribution 381.25 15.07 5.75 5.75 Total: -1.00 -31.29 381.25 -8.06 -39.35 By element: Atomic # 1 Polarization: 17.47 SS G_CDS: -5.91 Total: 11.57 kcal Atomic # 6 Polarization: 2.65 SS G_CDS: -2.10 Total: 0.55 kcal Atomic # 7 Polarization: -35.82 SS G_CDS: 0.02 Total: -35.79 kcal Atomic # 8 Polarization: -35.68 SS G_CDS: -0.80 Total: -36.47 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.06 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -31.29 -8.06 -39.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844014025.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.062 kcal (2) G-P(sol) polarization free energy of solvation -31.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds