Wall clock time and date at job start Wed Apr 1 2020 05:20:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.36006 * 116.99576 * 2 1 4 4 C 1.37928 * 119.83461 * 0.02562 * 3 2 1 5 5 C 1.39734 * 120.13947 * 180.09571 * 4 3 2 6 6 C 1.47599 * 120.25198 * 179.85219 * 5 4 3 7 7 O 1.21586 * 120.00235 * 320.12693 * 6 5 4 8 8 N 1.34775 * 119.99897 * 140.12712 * 6 5 4 9 9 C 1.47023 * 125.65084 * 354.54527 * 8 6 5 10 10 C 1.54326 * 107.27095 * 181.07670 * 9 8 6 11 11 C 1.55440 * 102.96822 * 22.19724 * 10 9 8 12 12 O 1.42904 * 111.01844 * 82.52024 * 11 10 9 13 13 C 1.50699 * 111.11839 * 206.45981 * 11 10 9 14 14 H 1.08001 * 120.00054 * 353.55765 * 13 11 10 15 15 C 1.37881 * 120.00459 * 173.55351 * 13 11 10 16 16 N 1.31520 * 119.99512 * 0.02562 * 15 13 11 17 17 Si 1.86791 * 120.00073 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47276 * 60.00270 * 17 15 13 19 19 H 1.48507 * 109.47156 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47517 * 300.00336 * 17 15 13 21 21 C 1.47430 * 125.64999 * 174.57121 * 8 6 5 22 22 C 1.39793 * 119.49524 * 0.12190 * 5 4 3 23 23 C 1.37389 * 119.96543 * 359.37792 * 22 5 4 24 24 C 1.39042 * 120.97399 * 0.89428 * 23 22 5 25 25 O 1.36082 * 111.20198 * 179.00064 * 24 23 22 26 26 C 1.43743 * 109.29072 * 18.89906 * 25 24 23 27 27 H 1.09001 * 110.74157 * 90.58305 * 26 25 24 28 28 C 1.53000 * 110.74794 * 213.74092 * 26 25 24 29 29 C 1.51690 * 132.01896 * 180.76220 * 23 22 5 30 30 H 1.08999 * 109.47634 * 59.99934 * 1 2 3 31 31 H 1.08996 * 109.46875 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46682 * 299.99692 * 1 2 3 33 33 H 1.08002 * 119.93209 * 0.06929 * 4 3 2 34 34 H 1.08999 * 109.88305 * 300.50082 * 9 8 6 35 35 H 1.08994 * 109.88016 * 61.66492 * 9 8 6 36 36 H 1.09001 * 110.71645 * 140.55830 * 10 9 8 37 37 H 1.08991 * 110.72385 * 263.65247 * 10 9 8 38 38 H 0.96694 * 114.00110 * 186.50124 * 12 11 10 39 39 H 0.96996 * 119.99146 * 180.02562 * 16 15 13 40 40 H 1.09004 * 110.36657 * 274.69579 * 21 8 6 41 41 H 1.09001 * 110.36452 * 36.90041 * 21 8 6 42 42 H 1.08004 * 120.01446 * 179.66556 * 22 5 4 43 43 H 1.09001 * 109.47316 * 58.55113 * 28 26 25 44 44 H 1.08999 * 109.46957 * 178.55206 * 28 26 25 45 45 H 1.09002 * 109.47221 * 298.54629 * 28 26 25 46 46 H 1.08998 * 110.93980 * 46.43299 * 29 23 22 47 47 H 1.08999 * 110.97383 * 282.75554 * 29 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2119 0.0000 4 6 1.2918 2.3664 0.0005 5 6 1.9194 3.6148 -0.0015 6 6 1.1143 4.8519 -0.0042 7 8 0.1057 4.9194 -0.6799 8 7 1.4971 5.9067 0.7423 9 6 2.6236 5.9242 1.6870 10 6 2.6631 7.3280 2.3270 11 6 1.2106 7.8438 2.1262 12 8 0.3435 7.3436 3.1461 13 6 1.1710 9.3495 2.0773 14 1 2.0651 9.9201 2.2809 15 6 -0.0066 9.9988 1.7726 16 7 -1.0955 9.3040 1.5252 17 14 -0.0553 11.8650 1.7113 18 1 0.8990 12.3517 0.6829 19 1 -1.4278 12.3133 1.3637 20 1 0.3242 12.4141 3.0379 21 6 0.8554 7.2340 0.7473 22 6 3.3157 3.6832 -0.0066 23 6 4.0594 2.5281 0.0033 24 6 3.4444 1.2810 -0.0002 25 8 4.3645 0.2785 -0.0110 26 6 5.6338 0.7942 0.4241 27 1 5.7411 0.6947 1.5043 28 6 6.7824 0.0889 -0.2998 29 6 5.5565 2.2844 0.0161 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8901 33 1 0.2135 2.3054 0.0021 34 1 2.4723 5.1691 2.4583 35 1 3.5558 5.7328 1.1557 36 1 2.9053 7.2615 3.3876 37 1 3.3773 7.9680 1.8091 38 1 -0.5897 7.5562 3.0081 39 1 -1.9238 9.7607 1.3105 40 1 1.2566 7.8524 -0.0557 41 1 -0.2250 7.1333 0.6439 42 1 3.8095 4.6437 -0.0137 43 1 6.6731 0.2268 -1.3755 44 1 7.7321 0.5128 0.0262 45 1 6.7603 -0.9755 -0.0658 46 1 6.0478 2.9168 0.7555 47 1 5.9856 2.4401 -0.9737 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000844014025.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:01 Heat of formation + Delta-G solvation = -138.399247 kcal Electronic energy + Delta-G solvation = -31154.679171 eV Core-core repulsion = 26881.705104 eV Total energy + Delta-G solvation = -4272.974067 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.45693 -41.12531 -40.15465 -38.99758 -37.57828 -36.08091 -34.23318 -33.91251 -32.40808 -31.82275 -30.96816 -29.53921 -28.56434 -27.50423 -26.91340 -25.15955 -23.50932 -22.64985 -22.63987 -21.49346 -20.60441 -19.18725 -18.89816 -18.72799 -18.19309 -17.54267 -17.24255 -16.99715 -16.58667 -16.53633 -16.39602 -16.02322 -15.81668 -15.02459 -14.87023 -14.70409 -14.66913 -14.36090 -14.21449 -13.98112 -13.69884 -13.52524 -13.42818 -13.35596 -13.23124 -13.01062 -12.81290 -12.65434 -12.54336 -12.40599 -12.33288 -12.27432 -12.19401 -12.03617 -11.88245 -11.73527 -11.19652 -11.09309 -10.65254 -10.31709 -9.72373 -9.54532 -9.00666 -8.24138 -6.41470 -0.27454 0.14308 1.44182 1.44760 1.52851 1.57069 1.91827 2.14019 2.24965 2.39230 2.51941 3.01853 3.25748 3.41977 3.58688 3.76113 3.81164 3.98382 4.02216 4.07196 4.10223 4.16561 4.22051 4.29612 4.31559 4.35278 4.46297 4.61006 4.65590 4.72759 4.74610 4.78551 4.84142 4.89945 5.03586 5.05302 5.08159 5.11932 5.12893 5.27629 5.29609 5.35830 5.42180 5.47577 5.75698 5.81618 6.07282 6.31018 6.55764 6.67945 7.04428 7.27077 7.35154 8.80842 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.017185 B = 0.002758 C = 0.002491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.969724 B =10149.614253 C =11235.734531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.325 6.325 3 C 0.095 3.905 4 C -0.132 4.132 5 C -0.123 4.123 6 C 0.564 3.436 7 O -0.592 6.592 8 N -0.604 5.604 9 C 0.103 3.897 10 C -0.112 4.112 11 C 0.232 3.768 12 O -0.588 6.588 13 C -0.554 4.554 14 H 0.071 0.929 15 C 0.025 3.975 16 N -0.917 5.917 17 Si 0.964 3.036 18 H -0.268 1.268 19 H -0.288 1.288 20 H -0.269 1.269 21 C 0.106 3.894 22 C -0.068 4.068 23 C -0.138 4.138 24 C 0.088 3.912 25 O -0.310 6.310 26 C 0.066 3.934 27 H 0.100 0.900 28 C -0.145 4.145 29 C -0.098 4.098 30 H 0.057 0.943 31 H 0.129 0.871 32 H 0.059 0.941 33 H 0.140 0.860 34 H 0.069 0.931 35 H 0.102 0.898 36 H 0.085 0.915 37 H 0.095 0.905 38 H 0.372 0.628 39 H 0.268 0.732 40 H 0.049 0.951 41 H 0.046 0.954 42 H 0.155 0.845 43 H 0.063 0.937 44 H 0.107 0.893 45 H 0.067 0.933 46 H 0.125 0.875 47 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.754 -16.990 -1.697 23.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.240 6.240 3 C 0.050 3.950 4 C -0.152 4.152 5 C -0.126 4.126 6 C 0.354 3.646 7 O -0.475 6.475 8 N -0.335 5.335 9 C -0.019 4.019 10 C -0.150 4.150 11 C 0.192 3.808 12 O -0.396 6.396 13 C -0.592 4.592 14 H 0.090 0.910 15 C -0.176 4.176 16 N -0.556 5.556 17 Si 0.789 3.211 18 H -0.193 1.193 19 H -0.214 1.214 20 H -0.194 1.194 21 C -0.016 4.016 22 C -0.086 4.086 23 C -0.139 4.139 24 C 0.041 3.959 25 O -0.225 6.225 26 C 0.011 3.989 27 H 0.118 0.882 28 C -0.202 4.202 29 C -0.134 4.134 30 H 0.076 0.924 31 H 0.147 0.853 32 H 0.077 0.923 33 H 0.158 0.842 34 H 0.087 0.913 35 H 0.120 0.880 36 H 0.104 0.896 37 H 0.114 0.886 38 H 0.221 0.779 39 H 0.078 0.922 40 H 0.067 0.933 41 H 0.065 0.935 42 H 0.173 0.827 43 H 0.082 0.918 44 H 0.125 0.875 45 H 0.086 0.914 46 H 0.143 0.857 47 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 15.684 -17.655 -1.937 23.695 hybrid contribution -1.924 1.560 -0.434 2.515 sum 13.760 -16.095 -2.371 21.307 Atomic orbital electron populations 1.23358 0.76569 1.05878 1.01894 1.86129 1.23148 1.25429 1.89250 1.18055 0.88668 0.85119 1.03174 1.20909 1.00509 0.90023 1.03748 1.19370 0.94140 0.91660 1.07467 1.18291 0.84142 0.83063 0.79064 1.90731 1.27886 1.83543 1.45326 1.48689 1.32533 1.11729 1.40542 1.22404 0.89057 0.98672 0.91723 1.22704 0.95917 0.94561 1.01778 1.19929 0.87546 0.91029 0.82333 1.86100 1.21917 1.80585 1.50991 1.21765 0.96752 0.91835 1.48896 0.91036 1.25846 0.95225 1.03318 0.93199 1.69848 1.01028 1.37526 1.47165 0.85512 0.77052 0.79656 0.78837 1.19327 1.21399 1.19448 1.22890 0.97103 0.80827 1.00817 1.20589 0.90656 0.99069 0.98329 1.20815 0.97610 0.91041 1.04390 1.19093 0.87863 0.88612 1.00285 1.86879 1.19645 1.33649 1.82323 1.23796 0.81990 0.92599 1.00539 0.88217 1.21914 0.96166 1.01318 1.00768 1.22071 0.89191 0.96393 1.05755 0.92408 0.85290 0.92273 0.84229 0.91286 0.88044 0.89623 0.88605 0.77918 0.92241 0.93257 0.93503 0.82724 0.91790 0.87470 0.91389 0.85654 0.87142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 9.81 113.37 1.11 1.45 16 2 O -0.33 -8.87 10.50 -93.60 -0.98 -9.86 16 3 C 0.10 2.77 6.70 22.62 0.15 2.93 16 4 C -0.13 -4.16 8.61 22.56 0.19 -3.97 16 5 C -0.12 -4.07 5.48 -20.07 -0.11 -4.18 16 6 C 0.56 23.65 7.45 86.71 0.65 24.30 16 7 O -0.59 -29.81 17.16 -3.99 -0.07 -29.87 16 8 N -0.60 -24.84 3.33 -815.46 -2.71 -27.55 16 9 C 0.10 3.32 5.81 86.73 0.50 3.82 16 10 C -0.11 -4.06 6.14 31.88 0.20 -3.86 16 11 C 0.23 11.04 0.88 -10.05 -0.01 11.03 16 12 O -0.59 -30.17 13.16 -148.98 -1.96 -32.13 16 13 C -0.55 -28.27 8.28 25.60 0.21 -28.06 16 14 H 0.07 3.49 7.79 -2.91 -0.02 3.46 16 15 C 0.03 1.30 5.29 84.65 0.45 1.75 16 16 N -0.92 -50.05 10.69 21.45 0.23 -49.82 16 17 Si 0.96 41.35 29.54 68.60 2.03 43.37 16 18 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 19 H -0.29 -12.39 7.11 99.48 0.71 -11.68 16 20 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 21 C 0.11 5.19 5.41 86.85 0.47 5.66 16 22 C -0.07 -1.74 8.45 22.45 0.19 -1.56 16 23 C -0.14 -3.06 6.25 -19.56 -0.12 -3.18 16 24 C 0.09 2.33 6.98 22.88 0.16 2.49 16 25 O -0.31 -7.43 10.80 -94.46 -1.02 -8.45 16 26 C 0.07 0.93 4.25 31.17 0.13 1.06 16 27 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 28 C -0.14 -1.31 9.61 71.98 0.69 -0.61 16 29 C -0.10 -1.28 6.65 30.74 0.20 -1.07 16 30 H 0.06 1.15 7.65 -2.39 -0.02 1.13 16 31 H 0.13 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.06 1.15 7.65 -2.38 -0.02 1.13 16 33 H 0.14 4.40 6.24 -2.91 -0.02 4.38 16 34 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 35 H 0.10 2.43 5.48 -2.39 -0.01 2.42 16 36 H 0.09 2.92 8.14 -2.39 -0.02 2.90 16 37 H 0.10 3.13 8.04 -2.39 -0.02 3.11 16 38 H 0.37 20.13 7.57 -74.06 -0.56 19.57 16 39 H 0.27 14.16 8.31 -92.71 -0.77 13.39 16 40 H 0.05 2.48 8.03 -2.38 -0.02 2.46 16 41 H 0.05 2.66 7.27 -2.39 -0.02 2.64 16 42 H 0.16 3.36 5.67 -2.91 -0.02 3.35 16 43 H 0.06 0.64 8.12 -2.39 -0.02 0.62 16 44 H 0.11 0.40 8.14 -2.39 -0.02 0.38 16 45 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 46 H 0.13 0.99 8.14 -2.39 -0.02 0.97 16 47 H 0.11 1.17 7.91 -2.39 -0.02 1.15 16 Total: -1.00 -71.31 381.25 1.03 -70.27 By element: Atomic # 1 Polarization: 35.60 SS G_CDS: 0.45 Total: 36.05 kcal Atomic # 6 Polarization: 2.92 SS G_CDS: 5.07 Total: 7.99 kcal Atomic # 7 Polarization: -74.89 SS G_CDS: -2.48 Total: -77.37 kcal Atomic # 8 Polarization: -76.28 SS G_CDS: -4.03 Total: -80.31 kcal Atomic # 14 Polarization: 41.35 SS G_CDS: 2.03 Total: 43.37 kcal Total: -71.31 1.03 -70.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844014025.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.127 kcal (2) G-P(sol) polarization free energy of solvation -71.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds