Wall clock time and date at job start Wed Apr 1 2020 05:19:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.47144 * 2 1 4 4 O 1.45199 * 109.47291 * 239.99447 * 2 1 3 5 5 C 1.34749 * 116.99723 * 90.00568 * 4 2 1 6 6 O 1.21507 * 120.00031 * 359.97438 * 5 4 2 7 7 C 1.47462 * 120.00022 * 180.02562 * 5 4 2 8 8 C 1.39820 * 120.27372 * 359.97438 * 7 5 4 9 9 C 1.37438 * 120.19785 * 179.87586 * 8 7 5 10 10 C 1.39606 * 120.43659 * 0.06454 * 9 8 7 11 11 C 1.39199 * 119.11322 * 0.16775 * 10 9 8 12 12 C 1.37284 * 120.93910 * 359.37190 * 11 10 9 13 13 C 1.51685 * 106.99453 * 179.43960 * 11 10 9 14 14 C 1.54697 * 101.88955 * 344.47692 * 13 11 10 15 15 H 1.09006 * 110.74263 * 143.70982 * 14 13 11 16 16 C 1.53000 * 110.74283 * 267.04118 * 14 13 11 17 17 O 1.35986 * 129.71037 * 180.59985 * 10 9 8 18 18 C 1.50702 * 109.46740 * 119.99901 * 2 1 3 19 19 O 1.21283 * 120.00262 * 115.00252 * 18 2 1 20 20 N 1.34777 * 119.99928 * 294.72158 * 18 2 1 21 21 C 1.46506 * 120.00264 * 0.28128 * 20 18 2 22 22 C 1.46499 * 120.00199 * 180.27479 * 20 18 2 23 23 C 1.50697 * 109.46949 * 90.00203 * 22 20 18 24 24 H 1.08004 * 120.00186 * 0.02562 * 23 22 20 25 25 C 1.37881 * 120.00081 * 180.02562 * 23 22 20 26 26 N 1.31519 * 120.00096 * 0.02562 * 25 23 22 27 27 Si 1.86802 * 120.00103 * 180.02562 * 25 23 22 28 28 H 1.48498 * 109.46927 * 59.99717 * 27 25 23 29 29 H 1.48496 * 109.47287 * 179.97438 * 27 25 23 30 30 H 1.48501 * 109.47040 * 299.99940 * 27 25 23 31 31 H 1.09003 * 109.47144 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47390 * 300.00243 * 1 2 3 33 33 H 1.09003 * 109.46768 * 60.00330 * 1 2 3 34 34 H 1.08000 * 119.89639 * 359.84607 * 8 7 5 35 35 H 1.08004 * 119.77917 * 180.02562 * 9 8 7 36 36 H 1.08005 * 120.06917 * 180.59079 * 12 11 10 37 37 H 1.08997 * 110.94265 * 226.32300 * 13 11 10 38 38 H 1.09001 * 110.94269 * 102.62554 * 13 11 10 39 39 H 1.08998 * 109.47190 * 174.85556 * 16 14 13 40 40 H 1.09003 * 109.47378 * 294.85949 * 16 14 13 41 41 H 1.09004 * 109.46778 * 54.86157 * 16 14 13 42 42 H 1.08998 * 109.46921 * 89.99095 * 21 20 18 43 43 H 1.08994 * 109.46996 * 209.99677 * 21 20 18 44 44 H 1.09001 * 109.46578 * 329.99540 * 21 20 18 45 45 H 1.09001 * 109.47567 * 210.00057 * 22 20 18 46 46 H 1.09005 * 109.47076 * 330.00563 * 22 20 18 47 47 H 0.96991 * 119.99957 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0141 -0.6846 -1.1855 5 6 2.2181 0.0668 -2.2853 6 8 1.9971 1.2612 -2.2546 7 6 2.7085 -0.5607 -3.5264 8 6 2.9641 -1.9347 -3.5682 9 6 3.4187 -2.5184 -4.7265 10 6 3.6309 -1.7474 -5.8708 11 6 3.3794 -0.3792 -5.8219 12 6 2.9162 0.2127 -4.6730 13 6 3.7111 0.1818 -7.1916 14 6 4.5354 -0.9687 -7.8161 15 1 4.3264 -1.0588 -8.8822 16 6 6.0310 -0.7585 -7.5715 17 8 4.0606 -2.1240 -7.1048 18 6 2.0323 -0.7104 1.2305 19 8 2.6529 -1.7467 1.1217 20 7 1.7966 -0.1912 2.4517 21 6 1.0469 1.0606 2.5834 22 6 2.2900 -0.8786 3.6476 23 6 3.6727 -0.3794 3.9794 24 1 4.1372 0.3748 3.3615 25 6 4.3447 -0.8855 5.0719 26 7 3.7792 -1.8043 5.8240 27 14 6.0583 -0.2662 5.4836 28 1 6.0081 1.1958 5.7389 29 1 6.5585 -0.9630 6.6957 30 1 6.9702 -0.5386 4.3436 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8901 34 1 2.8043 -2.5390 -2.6875 35 1 3.6136 -3.5804 -4.7513 36 1 2.7167 1.2740 -4.6536 37 1 4.3098 1.0887 -7.1066 38 1 2.8039 0.3679 -7.7665 39 1 6.5842 -1.6230 -7.9384 40 1 6.3633 0.1359 -8.0986 41 1 6.2111 -0.6387 -6.5032 42 1 -0.0167 0.8394 2.6725 43 1 1.3830 1.5936 3.4727 44 1 1.2166 1.6800 1.7027 45 1 1.6208 -0.6779 4.4843 46 1 2.3264 -1.9519 3.4608 47 1 4.2518 -2.1601 6.5927 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000850062580.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:19:23 Heat of formation + Delta-G solvation = -119.320265 kcal Electronic energy + Delta-G solvation = -30009.092995 eV Core-core repulsion = 25736.946254 eV Total energy + Delta-G solvation = -4272.146741 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.69101 -40.57607 -39.00251 -37.64133 -36.27308 -34.91534 -33.61640 -32.89945 -31.82199 -31.17286 -30.58953 -27.72202 -27.30362 -26.17275 -25.03775 -23.98262 -22.45890 -22.33941 -22.01539 -20.71420 -18.86237 -18.20836 -17.56136 -16.91043 -16.80275 -16.52362 -16.21914 -16.04037 -15.77107 -15.38610 -14.61115 -14.56703 -14.46407 -14.15278 -13.97004 -13.60151 -13.51020 -13.33754 -13.01290 -12.96113 -12.80025 -12.67139 -12.51369 -12.36508 -12.16985 -12.08122 -11.69236 -11.66621 -11.43041 -11.23447 -11.19826 -11.10924 -10.93151 -10.69209 -10.61555 -10.54213 -10.17419 -9.67168 -9.29169 -8.90707 -8.57126 -8.44726 -7.73175 -6.06042 -4.11009 0.46722 0.99326 2.36583 2.44818 2.81666 3.25871 3.32080 3.36188 3.40525 3.46965 3.86057 3.93758 4.10951 4.38029 4.43288 4.45545 4.60472 4.67277 4.77626 4.84795 4.97480 4.99962 5.09443 5.11389 5.11814 5.25291 5.28507 5.34239 5.38466 5.48380 5.62173 5.65353 5.67508 5.69113 5.81990 5.87373 5.95083 6.01317 6.04931 6.18271 6.22241 6.42235 6.74130 6.98027 7.38466 7.46018 7.73720 7.89951 8.19846 8.28859 8.84199 8.99022 9.53976 11.02057 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.014328 B = 0.002265 C = 0.002096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1953.746019 B =12356.809281 C =13356.869665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.071 3.929 3 H 0.106 0.894 4 O -0.321 6.321 5 C 0.514 3.486 6 O -0.513 6.513 7 C -0.154 4.154 8 C -0.019 4.019 9 C -0.152 4.152 10 C 0.143 3.857 11 C -0.192 4.192 12 C -0.003 4.003 13 C -0.103 4.103 14 C 0.076 3.924 15 H 0.119 0.881 16 C -0.174 4.174 17 O -0.296 6.296 18 C 0.509 3.491 19 O -0.519 6.519 20 N -0.596 5.596 21 C 0.076 3.924 22 C 0.247 3.753 23 C -0.529 4.529 24 H 0.057 0.943 25 C 0.062 3.938 26 N -0.894 5.894 27 Si 0.899 3.101 28 H -0.277 1.277 29 H -0.286 1.286 30 H -0.276 1.276 31 H 0.072 0.928 32 H 0.089 0.911 33 H 0.068 0.932 34 H 0.154 0.846 35 H 0.139 0.861 36 H 0.140 0.860 37 H 0.095 0.905 38 H 0.093 0.907 39 H 0.070 0.930 40 H 0.077 0.923 41 H 0.065 0.935 42 H 0.051 0.949 43 H 0.078 0.922 44 H 0.058 0.942 45 H 0.036 0.964 46 H 0.046 0.954 47 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.023 4.759 -26.445 27.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.013 3.987 3 H 0.124 0.876 4 O -0.236 6.236 5 C 0.359 3.641 6 O -0.403 6.403 7 C -0.155 4.155 8 C -0.037 4.037 9 C -0.171 4.171 10 C 0.096 3.904 11 C -0.193 4.193 12 C -0.022 4.022 13 C -0.140 4.140 14 C 0.020 3.980 15 H 0.136 0.864 16 C -0.231 4.231 17 O -0.209 6.209 18 C 0.293 3.707 19 O -0.395 6.395 20 N -0.329 5.329 21 C -0.068 4.068 22 C 0.129 3.871 23 C -0.568 4.568 24 H 0.075 0.925 25 C -0.140 4.140 26 N -0.533 5.533 27 Si 0.726 3.274 28 H -0.202 1.202 29 H -0.211 1.211 30 H -0.201 1.201 31 H 0.091 0.909 32 H 0.107 0.893 33 H 0.087 0.913 34 H 0.172 0.828 35 H 0.157 0.843 36 H 0.158 0.842 37 H 0.114 0.886 38 H 0.111 0.889 39 H 0.089 0.911 40 H 0.096 0.904 41 H 0.084 0.916 42 H 0.069 0.931 43 H 0.097 0.903 44 H 0.077 0.923 45 H 0.054 0.946 46 H 0.064 0.936 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.717 4.205 -26.374 26.964 hybrid contribution 0.938 0.717 0.385 1.242 sum -2.779 4.923 -25.989 26.597 Atomic orbital electron populations 1.22281 0.92335 1.04061 1.04034 1.22647 0.95738 0.97657 0.82692 0.87599 1.86646 1.76659 1.40907 1.19375 1.20979 0.74215 0.84992 0.83896 1.90807 1.49133 1.15866 1.84482 1.18867 1.10324 0.94384 0.91927 1.21363 0.91146 0.93515 0.97646 1.20280 1.06379 1.00917 0.89492 1.19942 0.91848 0.92794 0.85770 1.20581 1.07961 0.94483 0.96303 1.20278 0.92539 1.00257 0.89080 1.21861 1.01002 0.99171 0.91992 1.23502 0.94508 0.82737 0.97253 0.86367 1.22271 0.94307 1.03064 1.03450 1.86871 1.76470 1.34470 1.23094 1.19757 0.81177 0.85948 0.83819 1.90702 1.39590 1.23433 1.85747 1.48069 1.54002 1.23924 1.06937 1.21847 0.95364 0.86748 1.02831 1.19346 0.94216 0.93852 0.79730 1.21386 1.00929 1.23154 1.11326 0.92486 1.24931 0.98217 0.94877 0.96009 1.69917 1.38160 1.28066 1.17159 0.86545 0.84255 0.78790 0.77772 1.20228 1.21128 1.20136 0.90922 0.89280 0.91276 0.82836 0.84324 0.84222 0.88617 0.88852 0.91113 0.90415 0.91603 0.93108 0.90288 0.92330 0.94604 0.93630 0.92600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.23 9.28 37.16 0.34 -1.89 16 2 C 0.07 1.20 2.17 -27.88 -0.06 1.14 16 3 H 0.11 1.73 6.14 -51.93 -0.32 1.41 16 4 O -0.32 -5.51 8.68 -47.29 -0.41 -5.92 16 5 C 0.51 7.98 7.87 34.49 0.27 8.25 16 6 O -0.51 -8.53 15.62 -19.27 -0.30 -8.83 16 7 C -0.15 -2.00 5.88 -104.94 -0.62 -2.62 16 8 C -0.02 -0.22 9.59 -39.28 -0.38 -0.60 16 9 C -0.15 -1.61 10.04 -39.36 -0.40 -2.01 16 10 C 0.14 1.50 6.95 -38.71 -0.27 1.23 16 11 C -0.19 -1.88 6.25 -104.13 -0.65 -2.53 16 12 C 0.00 -0.04 9.58 -39.32 -0.38 -0.41 16 13 C -0.10 -0.67 6.65 -26.50 -0.18 -0.84 16 14 C 0.08 0.48 4.31 -25.84 -0.11 0.37 16 15 H 0.12 0.47 8.14 -51.93 -0.42 0.05 16 16 C -0.17 -0.99 9.49 37.16 0.35 -0.64 16 17 O -0.30 -2.87 10.81 -19.70 -0.21 -3.08 16 18 C 0.51 10.94 7.10 -10.98 -0.08 10.86 16 19 O -0.52 -13.45 16.09 -14.05 -0.23 -13.67 16 20 N -0.60 -12.64 2.86 -182.95 -0.52 -13.17 16 21 C 0.08 1.18 8.93 59.85 0.53 1.72 16 22 C 0.25 6.43 5.16 -5.20 -0.03 6.41 16 23 C -0.53 -15.04 9.39 -34.44 -0.32 -15.36 16 24 H 0.06 1.62 7.81 -52.48 -0.41 1.21 16 25 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 26 N -0.89 -26.49 13.29 55.43 0.74 -25.76 16 27 Si 0.90 21.95 29.54 -169.99 -5.02 16.93 16 28 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 29 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 30 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 31 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.09 1.03 5.14 -51.93 -0.27 0.76 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.15 1.83 7.61 -52.49 -0.40 1.43 16 35 H 0.14 1.22 8.06 -52.48 -0.42 0.80 16 36 H 0.14 1.44 7.66 -52.48 -0.40 1.04 16 37 H 0.10 0.49 7.92 -51.93 -0.41 0.08 16 38 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 41 H 0.06 0.48 8.12 -51.93 -0.42 0.06 16 42 H 0.05 0.65 7.04 -51.93 -0.37 0.29 16 43 H 0.08 1.26 8.07 -51.93 -0.42 0.84 16 44 H 0.06 0.78 6.06 -51.93 -0.31 0.46 16 45 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 46 H 0.05 1.33 7.42 -51.93 -0.39 0.95 16 47 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 394.58 15.07 5.95 5.95 Total: -1.00 -35.29 394.58 -8.70 -43.98 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: -6.63 Total: -1.18 kcal Atomic # 6 Polarization: 6.80 SS G_CDS: -2.06 Total: 4.75 kcal Atomic # 7 Polarization: -39.14 SS G_CDS: 0.21 Total: -38.92 kcal Atomic # 8 Polarization: -30.35 SS G_CDS: -1.15 Total: -31.50 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -35.29 -8.70 -43.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850062580.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.337 kcal (2) G-P(sol) polarization free energy of solvation -35.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds